Bibliography

Publications of the year

Doctoral Dissertations and Habilitation Theses

• 1P. Mazzocco.
  
  Applications of mathematical modeling for optimization of chemotherapy delivery protocols, to treat low-grade glioma patients, Université Grenoble Alpes, September 2015.
  
  https://tel.archives-ouvertes.fr/tel-01235541

Articles in International Peer-Reviewed Journals

• 2M. Adimy, A. Chekroun, T.-M. Touaoula.
  
  A delay differential-difference system of hematopoietic stem cell dynamics, in: Comptes Rendus Mathématique, April 2015, vol. 353, n^o 4. [ DOI : 10.1016/j.crma.2015.01.018 ]
  
  https://hal.inria.fr/hal-01249894
• 3M. Adimy, A. Chekroun, T.-M. Touaoula.
  
  Age-structured and delay differential-difference model of hematopoietic stem cell dynamics, in: Discrete and Continuous Dynamical Systems - Series B, November 2015, vol. 20, n^o 9, 27 p. [ DOI : 10.3934/dcdsb.2015.20.2765 ]
  
  https://hal.inria.fr/hal-01249892
• 4K. Allali, F. Bikany, A. Taik, V. Volpert.
  
  Numerical simulations of heat explosion with convection in porous media, in: Combustion Science and Technology, 2015. [ DOI : 10.1080/00102202.2014.948619 ]
  
  https://hal.archives-ouvertes.fr/hal-01238489
• 5K. Allali, V. Volpert, V. Vougalter.
  
  A Model of Miscible Liquids in Porous Media, in: Electronic Journal of Differential Equations, 2015.
  
  https://hal.archives-ouvertes.fr/hal-01237171
• 6O. Arnaud, S. Meyer, E. Vallin, G. Beslon, O. Gandrillon.
  
  Temperature-induced variation in gene expression burst size in metazoan cells, in: BMC Molecular Biology, November 2015, vol. 16, n^o 20. [ DOI : 10.1186/s12867-015-0048-2 ]
  
  https://hal.inria.fr/hal-01248384
• 7M. Benmir, N. Bessonov, S. Boujena, V. Volpert.
  
  Travelling Waves of Cell Dierentiation, in: Acta Biotheoretica, 2015.
  
  https://hal.archives-ouvertes.fr/hal-01238175
• 8O. Bergmann, S. Zdunek, A. Felker, M. Salehpour, K. Alkass, S. Bernard, S. Sjostrom, M. Szewczykowska, T. Jackowska, C. dos Remedios, T. Malm, M. Andrä, R. Jashari, J. Nyengaard, G. Possnert, S. Jovinge, H. Druid, J. Frisén.
  
  Dynamics of Cell Generation and Turnover in the Human Heart, in: Cell, June 2015, vol. 161, n^o 7, pp. 1566-1575. [ DOI : 10.1016/j.cell.2015.05.026 ]
  
  https://hal.archives-ouvertes.fr/hal-01225091
• 9S. Bernard, F. Crauste.
  
  Optimal linear stability condition for scalar differential equations with distributed delay, in: Discrete and Continuous Dynamical Systems - Series B, September 2015, vol. 20, n^o 7. [ DOI : 10.3934/dcdsb.2015.20.1855 ]
  
  https://hal.archives-ouvertes.fr/hal-00997528
• 10N. Bessonov, M. Levin, N. Morozova, N. Reinberg, A. Tosenberger, V. Volpert.
  
  On a Model of Pattern Regeneration Based on Cell Memory, in: PLoS ONE, 2015. [ DOI : 10.1371/journal.pone.0118091 ]
  
  https://hal.archives-ouvertes.fr/hal-01237935
• 11N. Bessonov, M. Levin, N. Morozova, N. Reinberg, A. Tosenberger, V. Volpert.
  
  Target morphology and cell memory: a model of regenerative pattern formation Cell Memory Can Regulate Morphogenesis and Regeneration, in: Neural Regeneration Research, 2015.
  
  https://hal.archives-ouvertes.fr/hal-01238420
• 12N. Bessonov, N. Reinberg, V. Volpert.
  
  How morphology of artificial organisms influences their evolution, in: Ecological Complexity, 2015. [ DOI : 10.1016/j.ecocom.2015.09.005 ]
  
  https://hal.archives-ouvertes.fr/hal-01237505
• 13P. Cellier, T. Charnois, M. Plantevit, C. Rigotti, B. Crémilleux, O. Gandrillon, J. Klema, J.-L. Manguin.
  
  Sequential pattern mining for discovering gene interactions and their contextual information from biomedical texts, in: Journal of Biomedical Semantics, 2015, vol. 6, 27 p. [ DOI : 10.1186/s13326-015-0023-3 ]
  
  https://hal.archives-ouvertes.fr/hal-01192959
• 14G. D. Clapp, T. Lepoutre, R. El Cheikh, S. Bernard, J. Ruby, H. Labussière-Wallet, F. E. Nicolini, D. Levy.
  
  Implication of the Autologous Immune System in BCR-ABL Transcript Variations in Chronic Myelogenous Leukemia Patients Treated with Imatinib, in: Cancer Research, 2015, vol. 75, n^o 19, 4053 p. [ DOI : 10.1158/0008-5472.CAN-15-0611 ]
  
  https://hal.archives-ouvertes.fr/hal-01225078
• 15G. D. Clapp, T. Lepoutre, R. El Cheikh, S. Bernard, J. Ruby, H. Labussière-Wallet, F. E. Nicolini, D. Levy.
  
  Implication of the Autologous Immune System in BCR-ABL Transcript Variations in Chronic Myelogenous Leukemia Patients Treated with Imatinib, in: Cancer Research, October 2015, vol. 75, n^o 19, pp. 4053-62. [ DOI : 10.1158/0008-5472.CAN-15-0611 ]
  
  https://hal.inria.fr/hal-01251396
• 16F. Crauste, E. Terry, I. L. Mercier, J. Mafille, S. Djebali, T. Andrieu, B. Mercier, G. Kaneko, C. Arpin, J. Marvel, O. Gandrillon.
  
  Predicting pathogen-specific CD8 T cell immune responses from a modeling approach, in: Journal of Theoretical Biology, June 2015, vol. 374, pp. 66-82. [ DOI : 10.1016/j.jtbi.2015.03.033 ]
  
  https://hal.archives-ouvertes.fr/hal-01242319
• 17J. Demongeot, V. Volpert.
  
  Dynamical system model of decision making and propagation, in: Journal of Biological Systems, 2015. [ DOI : 10.1142/S0218339015500187 ]
  
  https://hal.archives-ouvertes.fr/hal-01237695
• 18N. Eymard, V. Volpert, V. Vougalter.
  
  Existence of Pulses for Local and Nonlocal Reaction-Diffusion Equations, in: Journal of Dynamics and Differential Equations, 2015. [ DOI : 10.1007/s10884-015-9487-1 ]
  
  https://hal.archives-ouvertes.fr/hal-01237744
• 19S. Gaubert, T. Lepoutre.
  
  Discrete limit and monotonicity properties of the Floquet eigenvalue in an age structured cell division cycle model, in: Journal of Mathematical Biology, December 2015, vol. 71, n^o 6, 30 pages. [ DOI : 10.1007/s00285-015-0874-3 ]
  
  https://hal.inria.fr/hal-00773211
• 20M. Jacquier, H. A. Soula, F. Crauste.
  
  A mathematical model of leptin resistance, in: Mathematical Biosciences, September 2015, vol. 267. [ DOI : 10.1016/j.mbs.2015.06.008 ]
  
  https://hal.inria.fr/hal-01233483
• 21P. Mazzocco, C. Barthélémy, G. Kaloshi, M. Lavielle, D. Ricard, A. Idbaih, D. Psimaras, M.-A. Renard, A. Alentorn, J. Honnorat, J.-Y. Delattre, F. Ducray, B. Ribba.
  
  Prediction of Response to Temozolomide in Low-Grade Glioma Patients Based on Tumor Size Dynamics and Genetic Characteristics, in: CPT Pharmacometrics Syst Pharmacol, 2015. [ DOI : 10.1002/psp4.54 ]
  
  https://hal.archives-ouvertes.fr/hal-01252076
• 22M. Rydén, M. Uzunel, J. Hård, E. Borgström, J. Mold, E. Arner, N. Mejhert, D. Andersson, Y. Widlund, M. Hassan, C. Jones, K. Spalding, B.-M. Svahn, A. Ahmadian, J. Frisén, S. Bernard, J. Mattsson, P. Arner.
  
  Transplanted Bone Marrow-Derived Cells Contribute to Human Adipogenesis, in: Cell Metabolism, September 2015, vol. 22, n^o 3, pp. 408-417. [ DOI : 10.1016/j.cmet.2015.06.011 ]
  
  https://hal.archives-ouvertes.fr/hal-01225085
• 23A. Tosenberger, F. Ataullakhanov, N. Bessonov, M. Panteleev, A. Tokarev, V. Volpert.
  
  Modelling of platelet–fibrin clot formation in flow with a DPD–PDE method, in: Journal of Mathematical Biology, 2015. [ DOI : 10.1007/s00285-015-0891-2 ]
  
  https://hal.archives-ouvertes.fr/hal-01237498
• 24A. Tosenberger, N. Bessonov, M. Levin, N. Reinberg, V. Volpert, N. Morozova.
  
  Acta Biotheoretica Mathematical and philosophical foundations of biological and biomedical science A Conceptual Model of Morphogenesis and Regeneration, in: Acta Biotheoretica, 2015. [ DOI : 10.1007/s10441-015-9249-9 ]
  
  https://hal.archives-ouvertes.fr/hal-01237264
• 25A. Tosenberger, N. Bessonov, V. Volpert.
  
  Influence of Fibrinogen Deficiency on Clot Formation in Flow by Hybrid Model, in: Mathematical modelling Natural phenomena, 2015. [ DOI : 10.1051/mmnp/201510102 ]
  
  https://hal.archives-ouvertes.fr/hal-01237500
• 26V. Volpert, N. Reinberg, M. Benmir, S. Boujena.
  
  On pulse solutions of a reaction–diffusion system in population dynamics, in: Journal of Nonlinear and Convex Analysis, 2015. [ DOI : 10.1016/j.na.2015.02.017 ]
  
  https://hal.archives-ouvertes.fr/hal-01237675
• 27V. Volpert.
  
  Pulses and waves for a bistable nonlocal reaction–diffusion equation, in: Applied Mathematics Letters, 2015. [ DOI : 10.1016/j.aml.2014.12.011 ]
  
  https://hal.archives-ouvertes.fr/hal-01237160
• 28V. Volpert, V. Vougalter.
  
  On the existence of stationary solutions for some nonlinear heat equations, in: Annales Academiae Scientiarum Fennicae Mathematica, 2015. [ DOI : 10.5186/aasfm.2015.4013 ]
  
  https://hal.archives-ouvertes.fr/hal-01238488
• 29V. Vougalter, V. Volpert.
  
  Existence of stationary solutions for some nonlocal reaction-diffusion equations, in: Dynamics of Partial Differential Equations, 2015. [ DOI : 10.4310/DPDE.2015.v12.n1.a3 ]
  
  https://hal.archives-ouvertes.fr/hal-01237921
• 30B. Zilg, S. Bernard, K. Alkass, S. Berg, H. Druid.
  
  A new model for the estimation of time of death from vitreous potassium levels corrected for age and temperature, in: Forensic Science International, September 2015, vol. 254, pp. 158-166. [ DOI : 10.1016/j.forsciint.2015.07.020 ]
  
  https://hal.archives-ouvertes.fr/hal-01225089

Conferences without Proceedings

• 31L. Barbarroux, J. Clairambault, N. Cogan, J. Eliaš, S. Hanson, M. Kimmel, T. Lorenzi.
  
  Preface to Session 70 " Mathematical models and methods to investigate heterogeneity in cell and cell population biology ", in: ICNAAM 2015 Session 70: "Mathematical models and methods to investigate heterogeneity in cell and cell population biology”, Rhodes, Greece, Organiser Session 70: Jean Clairambault , September 2015.
  
  https://hal.inria.fr/hal-01249244

Scientific Books (or Scientific Book chapters)

• 32E. Sciences (editor)
  
  Inverse problem for cell division rate in population dynamics, ITM Web of Conferences, May 2016, vol. Volume 4, n^o 01003, 10 p. [ DOI : 10.1051/itmconf/20150401003 ]
  
  https://hal.inria.fr/hal-01253536

Other Publications

• 33H. Berry, T. Lepoutre, Á. Mateos González.
  
  Quantitative convergence towards a self similar profile in an age-structured renewal equation for subdiffusion, March 2015, working paper or preprint.
  
  https://hal.inria.fr/hal-01136667

References in notes

• 34M. Adimy, S. Bernard, J. Clairambault, F. Crauste, S. Génieys, L. Pujo-Menjouet.
  
  Modélisation de la dynamique de l'hématopoïèse normale et pathologique, in: Hématologie, 2008, vol. 14, n^o 5, pp. 339-350.
  
  https://hal.inria.fr/hal-00750278
• 35M. Adimy, F. Crauste.
  
  Global stability of a partial differential equation with distributed delay due to cellular replication, in: Nonlinear Analysis, 2003, vol. 54, n^o 8, pp. 1469-1491.
• 36M. Adimy, F. Crauste, L. Pujo-Menjouet.
  
  On the stability of a maturity structured model of cellular proliferation, in: Discrete Contin. Dyn. Syst. Ser. A, 2005, vol. 12, n^o 3, pp. 501-522.
• 37R. Apostu, M. C. Mackey.
  
  Understanding cyclical thrombocytopenia: A mathematical modelling approach, in: Journal of Theoretical Biology, 2008, vol. 251, n^o 2, pp. 297-316.
• 38J. Belair, M. C. Mackey, J. Mahaffy.
  
  Age-structured and two-delay models for erythropoiesis, in: Mathematical Biosciences, 1995, vol. 128, n^o 1-2, pp. 317-346.
• 39S. Bernard, J. Belair, M. C. Mackey.
  
  Oscillations in cyclical neutropenia: new evidence based on mathematical modelling, in: J. Theor. Biol., 2003, vol. 223, n^o 3, pp. 283-298.
• 40N. Bessonov, L. Pujo-Menjouet, V. Volpert.
  
  Cell modelling of hematopoiesis, in: Math. Model. Nat. Phenomena, 2006, vol. 1, n^o 2, pp. 81-103.
• 41A. Ducrot, V. Volpert.
  
  On a model of leukemia development with a spatial cell distribution, in: Math. Model. Nat. Phenomena, 2007, vol. 2, n^o 3, pp. 101-120.
• 42C. Haurie, D. Dale, M. C. Mackey.
  
  Cyclical Neutropenia and Other Periodic Hematological Disorders: A Review of Mechanisms and Mathematical Models, in: Blood, 1998, vol. 92, n^o 8, pp. 2629-2640.
• 43M. C. Mackey.
  
  Unified hypothesis for the origin of aplastic anemia and periodic hematopoiesis, in: Blood, 1978, vol. 51, n^o 5, pp. 941-956.
• 44M. C. Mackey, C. Ou, L. Pujo-Menjouet, J. Wu.
  
  Periodic Oscillations of Blood Cell Populations in Chronic Myelogenous Leukemia, in: SIAM Journal on Mathematical Analysis, 2006, vol. 38, n^o 1, pp. 166-187.
• 45F. Michor, T. Hughes, Y. Iwasa, S. Branford, N. Shah, C. Sawyers.
  
  Dynamics of chronic myeloid leukaemia, in: Nature, 2005, vol. 435, n^o 7046, pp. 1267-1270.
• 46B. Perthame.
  
  Transport Equations in Biology, Birkhauser Basel, 2006.
• 47C. Rubiolo, D. Piazzolla, K. Meissl, H. Beug, J. Huber, A. Kolbus.
  
  A balance between Raf-1 and Fas expression sets the pace of erythroid differentiation, in: Blood, 2006, vol. 108, n^o 1, pp. 152-159.
• 48G. Webb.
  
  Theory of Nonlinear Age-Dependent Population Dynamics, Marcel Dekker, 1985.