Bibliography

Major publications by the team in recent years

• 1J. Arino, J.-L. Gouzé, A. Sciandra.
  A discrete, size-structured model of phytoplankton growth in the chemostat. Introduction of non constant cell division., in: J. Math. Biol., 2002, vol. 45, pp. 313-336.
  http://dx.doi.org/10.1007/s002850200160
• 2O. Bernard, G. Bastin.
  On the estimation of the pseudo-stoichiometric matrix for mass balance modeling of biotechnological processes, in: Math. Biosciences, 2005, vol. 193, pp. 51-77.
  http://dx.doi.org/10.1016/j.mbs.2004.10.004
• 3O. Bernard, J.-L. Gouzé.
  Closed loop observers bundle for uncertain biotechnological models, in: J. Process. Contr., 2004, vol. 14:7, pp. 765-774.
  http://dx.doi.org/10.1016/j.jprocont.2003.12.006
• 4O. Bernard, Z. Hadj-Sadok, D. Dochain, A. Genovesi, J.-P. Steyer.
  Dynamical model development and parameter identification for an anaerobic wastewater treatment process, in: Biotech.Bioeng., 2001, vol. 75, n^o 75, pp. 424-438.
  http://dx.doi.org/10.1002/bit.10036
• 5M. Chaves.
  Input-to-state stability of rate-controlled biochemical networks, in: SIAM Journal of Control and Optimization, 2005, vol. 44, pp. 704-727.
  http://dx.doi.org/10.1137/S0363012903437964
• 6B. Faugeras, O. Bernard, A. Sciandra, M. Levy.
  A modelling and data assimilation approach to estimate the carbon/chlorophyl and carbon/nitrogen ratios in a coupled hydrodynamical-biological model, in: Nonlinear Processes in Geophysics, 2004, vol. 11, pp. 515-533.
  http://dx.doi.org/10.5194/npg-11-515-2004
• 7J.-L. Gouzé, A. Rapaport, Z. Hadj-Sadok.
  Interval observers for uncertain biological systems, in: Ecological modelling, 2000, vol. 133, pp. 45-56.
  http://dx.doi.org/10.1016/S0304-3800(00)00279-9
• 8L. Mailleret, O. Bernard, J.-P. Steyer.
  Nonlinear adaptive control for bioreactors with unknown kinetics, in: Automatica, 2004, vol. 40-8, pp. 1379-1385.
  http://dx.doi.org/10.1016/j.automatica.2004.01.030
• 9L. Mailleret, F. Grognard.
  Global stability and optimisation of a general impulsive biological control model, in: Mathematical Biosciences, 2009, vol. 221, n^o 2, pp. 91-100.
  http://dx.doi.org/10.1016/j.mbs.2009.07.002
• 10F. Mairet, O. Bernard, P. Masci, T. Lacour, A. Sciandra.
  Modelling neutral lipid production by the microalga Isochrysis affinis galbana under nitrogen limitation, in: Biores. Technol., 2011, vol. 102, pp. 142-149.
  http://dx.doi.org/10.1016/j.biortech.2010.06.138

Publications of the year

Doctoral Dissertations and Habilitation Theses

• 11M. Chaves.
  Predictive analysis of dynamical systems: combining discrete and continuous formalisms, Université Nice Sophia Antipolis, October 2013, Habilitation à Diriger des Recherches.
  http://hal.inria.fr/tel-00908927
• 12M. Teixeira Alves.
  Des interactions indirectes entre les proies : modélisation et influence du comportement du prédateur commun, Université Nice Sophia Antipolis, January 2013.
  http://hal.inria.fr/tel-00833242

Articles in International Peer-Reviewed Journals

• 13W. Abou-Jaoudé, M. Chaves, J.-L. Gouzé.
  Links between topology of the transition graph and limit cycles in a two-dimensional piecewise affine biological model, in: Journal of Mathematical Biology, November 2013. [ DOI : 10.1007/s00285-013-0735-x ]
  http://hal.inria.fr/hal-00919872
• 14E. Altman, P. Bernhard, S. Caron, G. Kesidis, J. Rojas-Mora, S. Wong.
  A model of network neutrality with usage-based prices, in: Telecommunication Systems, February 2013, vol. 52, n^o 2, pp. 601-609, Available electronically by Springer since 2011. [ DOI : 10.1007/s11235-011-9504-6 ]
  http://hal.inria.fr/hal-00926718
• 15S.-D. Ayata, M. Lévy, O. Aumont, A. Sciandra, J. Sainte-Marie, A. Tagliabue, O. Bernard.
  Phytoplankton growth formulation in marine ecosystem models: should we take into account photo-acclimation and variable stoichiometry in oligotrophic areas?, in: Journal of Marine Systems, September 2013, vol. 125, pp. 29-40. [ DOI : 10.1016/j.jmarsys.2012.12.010 ]
  http://hal.inria.fr/hal-00820981
• 16T. Bayen, F. Mairet, M. Mazade.
  Optimal feeding strategy for the minimal time problem of a fed-batch bioreactor with mortality rate, in: Optimal Control Applications and Methods, December 2013. [ DOI : 10.1002/oca.2102 ]
  http://hal.inria.fr/hal-00936339
• 17I. Belgacem, J.-L. Gouzé.
  Global stability of enzymatic chain of full reversible Michaelis-Menten reactions, in: Acta Biotheoretica, 2013, vol. 61, n^o 3, pp. 425-436. [ DOI : 10.1007/s10441-013-9195-3 ]
  http://hal.inria.fr/hal-00850369
• 18O. Bernard, A.-C. Boulanger, M.-O. Bristeau, J. Sainte-Marie.
  A 2D model for hydrodynamics and biology coupling applied to algae growth simulations, in: ESAIM: Mathematical Modelling and Numerical Analysis, September 2013, vol. 47, n^o 5, pp. 1387-1412. [ DOI : 10.1051/m2an/2013072 ]
  http://hal.inria.fr/hal-00936859
• 19P. Bernhard, F. Hamelin.
  Simple signaling games of sexual selection (Grafen's revisited), in: Journal of Mathematical Biology, 2013. [ DOI : 10.1007/s00285-013-0745-8 ]
  http://hal.inria.fr/hal-00933425
• 20V. Calcagno, L. Mailleret, E. Wajnberg, F. Grognard.
  How optimal foragers should respond to habitat changes: a reanalysis of the Marginal Value Theorem, in: Journal of Mathematical Biology, 2013.
  http://hal.inria.fr/hal-00871355
• 21M. Castel, L. Mailleret, D. Andrivon, V. Ravigné, F. Hamelin.
  Allee effects and the evolution of polymorphism in cyclic parthenogens, in: The American Naturalist, 2013.
  http://hal.inria.fr/hal-00854466
• 22M. Chaves, E. Farcot, J.-L. Gouzé.
  Probabilistic approach for predicting periodic orbits in piecewise affine differential models, in: Bulletin of Mathematical Biology, 2013, vol. 75, n^o 6, pp. 967-987. [ DOI : 10.1007/s11538-012-9773-6 ]
  http://hal.inria.fr/hal-00828847
• 23M. Chaves, M. Preto.
  Hierarchy of models: From qualitative to quantitative analysis of circadian rhythms in cyanobacteria, in: Chaos: An Interdisciplinary Journal of Nonlinear Science, 2013, vol. 23, n^o 2, 025113 p. [ DOI : 10.1063/1.4810922 ]
  http://hal.inria.fr/hal-00850373
• 24C. García-Diéguez, O. Bernard, E. Roca.
  Reducing the Anaerobic Digestion Model No. 1 for its application to an industrial wastewater treatment plant treating winery effluent wastewater, in: Bioresource Technology, 2013, vol. 132, pp. 244 - 253. [ DOI : 10.1016/j.biortech.2012.12.166 ]
  http://hal.inria.fr/hal-00852253
• 25F. Grognard, A. R. Akhmetzhanov, O. Bernard.
  Optimal strategies for biomass productivity maximization in a photobioreactor using natural light, in: Automatica, 2013.
  http://hal.inria.fr/hal-00871341
• 26P. Hartmann, Q. Béchet, O. Bernard.
  The effect of Time Scales in Photosynthesis on microalgae Productivity, in: Bioprocess and Biosystems Engineering, 2013, to appear.
  http://hal.inria.fr/hal-00852255
• 27M. Le Chevanton, M. Garnier, G. Bougaran, N. Schreiber, E. Lukomska, J.-B. Bérard, E. Fouilland, O. Bernard, J.-P. Cadoret.
  Screening and selection of growth-promoting bacteria for it Dunaliella cultures, in: Algal Research, 2013, vol. 2, pp. 212–222. [ DOI : 10.1016/j.algal.2013.05.003 ]
  http://hal.inria.fr/hal-00852257
• 28F. Mairet, M. Moisan, O. Bernard.
  Estimation of neutral lipid and carbohydrate quotas in microalgae using adaptive interval observers, in: Bioprocess and Biosystems Engineering, February 2013. [ DOI : 10.1007/s00449-013-0913-7 ]
  http://hal.inria.fr/hal-00854476
• 29F. Mazenc, O. Bernard.
  ISS Interval Observers for Nonlinear Systems Transformed Into Triangular Systems, in: International Journal of Robust and Nonlinear Control, 2013. [ DOI : 10.1002/rnc.2937 ]
  http://hal.inria.fr/hal-00761288
• 30R. Muñoz-Tamayo, F. Mairet, O. Bernard.
  Optimizing microalgal production in raceway systems, in: Biotechnology Progress, 2013, vol. 29, n^o 2, pp. 543–552. [ DOI : 10.1002/btpr.1699 ]
  http://hal.inria.fr/hal-00850376
• 31M. Ras, J.-P. Steyer, O. Bernard.
  Temperature effect on microalgae: a crucial factor for outdoor production, in: Reviews in Environmental Science and Bio/Technology, 2013, vol. 12, n^o 2, pp. 153-164. [ DOI : 10.1007/s11157-013-9310-6 ]
  http://hal.inria.fr/hal-00852286
• 32J. Rault, E. Benoît, J.-L. Gouzé.
  Stabilizing effect of cannibalism in a two stages population model, in: Acta Biotheoretica, 2013, vol. 61, pp. 119-139. [ DOI : 10.1007/s10441-013-9172-x ]
  http://hal.inria.fr/hal-00848443
• 33A. Talec, M. Philistin, F. Ferey, G. Walenta, J.-O. Irisson, O. Bernard, A. Sciandra.
  Effect of gaseous cement industry effluents on four species of microalgae, in: Bioresource Technology, 2013, vol. 143, pp. 353 - 359. [ DOI : 10.1016/j.biortech.2013.05.104 ]
  http://hal.inria.fr/hal-00852260
• 34L. Tournier, M. Chaves.
  Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics, in: Automatica, 2013, vol. 49, n^o 4, pp. 884-893. [ DOI : 10.1016/j.automatica.2013.01.015, ]
  http://hal.inria.fr/hal-00848450
• 35E. Vercken, F. Vincent, L. Mailleret, N. Ris, E. Tabone, X. Fauvergue.
  Time-lag in extinction dynamics in experimental populations: evidence for a genetic Allee effect, in: Journal of Animal Ecology, 2013, vol. 82, n^o 3, pp. 621-631. [ DOI : 10.1111/1365-2656.12051 ]
  http://hal.inria.fr/hal-00848451

Articles in Non Peer-Reviewed Journals

• 36O. Bernard, J. Sainte-Marie, B. Sialve, J.-P. Steyer.
  Hydrodynamics-Biology Coupling for Algae Culture and Biofuel Production, in: ERCIM News, 2013, vol. 92, 47 p.
  http://hal.inria.fr/hal-00850370

International Conferences with Proceedings

• 37C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.
  A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgae, in: Computer Applied to Biotechnology, Mumbai, India, December 2013.
  http://hal.inria.fr/hal-00856042
• 38T. Bayen, F. Mairet, M. Mazade.
  Fed-batch bioreactor with mortality rate, in: 9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Toulouse, France, S. Tarbouriech, M. Krstic (editors), IFAC, 2013, vol. 9 Part 1, pp. 158-163. [ DOI : 10.3182/20130904-3-FR-2041.00024 ]
  http://hal.inria.fr/hal-00850367
• 39I. Belgacem, J.-L. Gouzé.
  Analysis and reduction of transcription translation coupled models for gene expression, in: CAB (Computer applied to Biotechnology), Mumbai, India, IFAC, 2013.
  http://hal.inria.fr/hal-00918000
• 40I. Belgacem, J.-L. Gouzé.
  Stability analysis and reduction of gene transcription models, in: 52nd IEEE Conference on Decision and Control (CDC'13), Florence, Italy, 2013.
  http://hal.inria.fr/hal-00850368
• 41C. Breindl, M. Chaves, F. Allgöwer.
  A linear reformulation of Boolean optimization problems and its application to the problem of estimating the structure of gene regulation networks, in: 52nd IEEE Conference on Decision and Control (CDC'13), Florence, Italy, 2013, to appear.
  http://hal.inria.fr/hal-00850371
• 42A. Carta, M. Chaves, J.-L. Gouzé.
  A class of Switched Piecewise Quadratic Systems for coupling gene expression with growth rate in bacteria, in: 9th IFAC Symposium Nonlinear Control Systems (NOLCOS'13), Toulouse, France, S. Tarbouriech, M. Krstic (editors), IFAC, 2013, vol. 9 Part 1, pp. 271-276. [ DOI : 10.3182/20130904-3-FR-2041.00140 ]
  http://hal.inria.fr/hal-00850372
• 43A. Carta, E. Cinquemani.
  State estimation for gene networks with intrinsic and extrinsic noise: a case study on E.coli arabinose uptake dynamics, in: ECC13 - European Control Conference - 2013, Zurich, Switzerland, 2013.
  http://hal.inria.fr/hal-00818902
• 44G. M. Grimaud, A. Dron, S. Rabouille, A. Sciandra, O. Bernard.
  Modelling light-dark regime influence on the carbon-nitrogen metabolism in a unicellular diazotrophic cyanobacterium, in: CAB, Mumbai, India, December 2013.
  http://hal.inria.fr/hal-00854479
• 45F. Grognard, J. Rault, J.-L. Gouzé.
  Positive control for global stabilization of predator-prey systems, in: 9th IFAC Symposium Nonlinear Control Systems (NOLCOS'13), Toulouse, France, S. Tarbouriech, M. Krstic (editors), IFAC, 2013, vol. 9 Part 1, pp. 265-270. [ DOI : 10.3182/20130904-3-FR-2041.00136 ]
  http://hal.inria.fr/hal-00850374
• 46P. Hartmann, A. Nikolaou, B. Chachuat, O. Bernard.
  A dynamic Model coupling Photoacclimation and Photoinhibition in Microalgae, in: European Control Conference (ECC13), Zurich, Switzerland, 2013.
  http://hal.inria.fr/hal-00852256
• 47F. Mairet, R. Muñoz-Tamayo, O. Bernard.
  Adaptive control for optimizing microalgae production, in: Computer Application in Biotechnology (CAB2013), Mumbai, India, 2013.
  http://hal.inria.fr/hal-00921486
• 48F. Mairet, R. Muñoz-Tamayo, O. Bernard.
  Driving Species Competition in a Light-limited Chemostat, in: 9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Toulouse, France, 2013.
  http://hal.inria.fr/hal-00852258
• 49R. Muñoz-Tamayo, F. Mairet, O. Bernard.
  Driving microalgal production in raceway systems to near optimal productivities, in: European Control Conference (ECC13), Zurich, Switzerland, 2013.
  http://hal.inria.fr/hal-00852259
• 50R. Muñoz-Tamayo, P. Martinon, G. Bougaran, F. Mairet, O. Bernard.
  Design of Optimal Experiments for Parameter Estimation of Microalgae Growth Models, in: Computer Applied to Biotechnology, Mumbai, India, December 2013.
  http://hal.inria.fr/hal-00856749
• 51V. Zulkower, J.-L. Gouzé, H. De Jong.
  Quantitative comparison of one-step and two-step models of gene expression, in: Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM'13), Toulouse, France, 2013.
  http://hal.inria.fr/hal-00927205

Conferences without Proceedings

• 52M. Castel, L. Mailleret, D. Andrivon, V. Ravigné, F. Hamelin.
  Allee effects and the evolution of polymorphism in cyclical parthenogens, in: Conférences Jacques Monod: Avancées récentes sur l'évolution du sexe et des systèmes génétiques, Roscoff, France, 2013.
  http://hal.inria.fr/hal-00853199
• 53F. Fabre, E. Rousseau, L. Mailleret, B. Moury.
  Sustainable plant resistance management in agricultural landscapes, in: 12th International plant virus Epidemiology Symposium, Arusha, Tanzania, United Republic Of, 2013.
  http://hal.inria.fr/hal-00853200
• 54N. Go, C. Bidot, C. Belloc, S. Touzeau.
  Exploration of the immune reponse to the Porcine Respiratory and Reproductive syndrome virus (PRRSV) by a modelling approach : conditions for viral clearance, in: 5th European Symposium of Porcine Health Management, Edinburgh, United Kingdom, 2013, Abstract.
  http://hal.inria.fr/hal-00938330
• 55N. Go, C. Bidot, C. Belloc, S. Touzeau.
  Exploration of the macrophage-virus interactions during a PRRSV infection by a modelling approach, in: Book of Abstracts of the 64th Annual Meeting of the European Federation of Animal Science, Nantes, France, 2013, Abstract.
  http://hal.inria.fr/hal-00938331
• 56N. Go, C. Bidot, C. Belloc, S. Touzeau.
  Modelling of the immune response to a respiratory virus targetting pulmonary macrophages: exploration of the host susceptibility and viral virulence, in: Systems Biology Approach to Infectious Processes, Lyon, France, 2013, Abstract.
  http://hal.inria.fr/hal-00938329
• 57N. Go, C. Bidot, C. Belloc, S. Touzeau.
  Modelling the interactions between the Porcine Respiratory and Reproductive Syndrome Virus (PRRSV) and its target cells: conditions for virus clearance, in: 9ème colloque du réseau français d'immunologie des animaux domestiques, Paris, France, 2013, 18 p, Abstract.
  http://hal.inria.fr/hal-00938328
• 58C. Poncet, A. Bout, P. Parolin, C. Bresch, H. Fatnassi, L. Mailleret.
  Biological and integrated pest control in floriculture, in: SUMFLOWER "Sustainable Management of Floriculture", Vintimiglia, Italy, 2013.
  http://hal.inria.fr/hal-00853202
• 59V. Ravigné, V. Lemesle, L. Mailleret, F. M. Hamelin.
  Parasites also have sex: consequences on host-parasite population dynamics, in: AARMS Mathematical Biology Workshop, St John's, Canada, 2013.
  http://hal.inria.fr/hal-00853205
• 60V. Ravigné, V. Lemesle, L. Mailleret, F. M. Hamelin.
  Parasites also have sex: consequences on host-parasite population dynamics, in: Computational and Mathematical Population Dynamics (CMPD4), Taiyuan, China, 2013.
  http://hal.inria.fr/hal-00853206

Scientific Books (or Scientific Book chapters)

• 61A. R. Akhmetzhanov, L. Mailleret, F. Grognard, P. Bernhard.
  Join forces or cheat: evolutionary analysis of a consumer-resource system, in: Advances in Dynamic Games, P. Cardaliaguet, R. Cressman (editors), Annals of the International Society of Dynamic Games; v. 12, Springer, 2013, pp. 73-95. [ DOI : 10.1007/978-0-8176-8355-9_4 ]
  http://hal.inria.fr/hal-00848377
• 62G. Bernot, J.-P. Comet, A. Richard, M. Chaves, J.-L. Gouzé, F. Dayan.
  Modeling and analysis of gene regulatory networks, in: Modeling in Computational Biology and Biomedicine, F. Cazals, P. Kornprobst (editors), Springer, 2013, pp. 47-80. [ DOI : 10.1007/978-3-642-31208-3_2 ]
  http://hal.inria.fr/hal-00848394
• 63P. Collet, D. Spinelli, L. Lardon, A. Hélias, J.-P. Steyer, O. Bernard.
  Life-Cycle Assessment of Microalgal-Based Biofuels, in: Biofuels from algae, A. Pandey, D.-J. Lee, Y. Chisti, C. R. Soccol (editors), Elsevier, September 2013, pp. 287-312.
  http://hal.inria.fr/hal-00854438
• 64J.-F. Cornet, O. Bernard.
  Modélisation et Ingénierie de la Photosynthèse, in: L'énergie à découvert, R. Mosseri, C. Jeandel (editors), CNRS Eds, 2013, pp. 160-161.
  http://hal.inria.fr/hal-00852282
• 65C. Gudin, O. Bernard.
  Le rêve porté par les microalgues, in: La culture de l'invisible - le rêve porté par les microalgues, C. Gudin (editor), Ovadia, 2013, 109 p.
  http://hal.inria.fr/hal-00852254

Internal Reports

• 66T. Bayen, F. Mairet.
  Optimization of the separation of two species in a chemostat, April 2013, under revision.
  http://hal.inria.fr/hal-00817147
• 67T. Bayen, F. Mairet, P. Martinon, M. Sebbah.
  Optimizing the anaerobic digestion of microalgae in a coupled process, September 2013.
  http://hal.inria.fr/hal-00860570
• 68T. Bayen, F. Mairet, M. Mazade.
  Minimal time problem for a fed-batch bioreactor with saturating singular control, November 2013.
  http://hal.inria.fr/hal-00879385
• 69T. Bayen, F. Mairet, M. Sebbah.
  Study of a controlled Kolmogorov periodic equation connected to the optimization of periodic bioprocess, August 2013.
  http://hal.inria.fr/hal-00855054

Scientific Popularization

• 70O. Bernard, J. Sainte-Marie, B. Sialve.
  Un zeste de mathématiques pour les biocarburants de demain, in: Mathématiques de la Planète Terre, un jour une brève, 2013.
  http://hal.inria.fr/hal-00852249

Patents

• 71O. Bernard, A. Sciandra, E. Pruvost, F. Lopes.
  Procédé et installation de production de micro-algues, 2013, n^o 13 56955.
  http://hal.inria.fr/hal-00856202

Other Publications

• 72N. Bajeux.
  Influence de la densité dépendance dans les modèles impulsionnels de dynamique de populations, UNS - Polytech Nice & Mines ParisTech, 2013.
  http://hal.inria.fr/hal-00850366
• 73F. Chazalon.
  Modélisation de la réponse du photosystème II à un flash de lumière dans un PAM et estimation des paramètres physiologiques, Université Pierre and Marie Curie, Paris VI, 2013.
  http://hal.inria.fr/hal-00852250
• 74D. Demory.
  Étude théorique et expérimentale de l'effet de l'hydrodynamique sur la photosynthèse du phytoplancton par un dispositif novateur à base de LED, Université Pierre and Marie Curie, Paris VI, 2013.
  http://hal.inria.fr/hal-00852252
• 75F. Todoran.
  Genetic regulatory networks. A discretization approach, UNS, 2013.
  http://hal.inria.fr/hal-00918018

References in notes

• 76A. R. Akhmetzhanov, F. Grognard, L. Mailleret.
  Optimal life-history strategies in seasonal consumer-resource dynamics, in: Evolution, 2011, vol. 65, n^o 11, pp. 3113–3125. [ DOI : 10.1111/j.1558-5646.2011.01381.x ]
  http://hal.inria.fr/hal-00848376
• 77O. Barrou, A. Karama, E. Lakhal, O. Bernard, M.-N. Pons, J.-P. Corriou.
  Estimation of a Reduced Model of the BSM1 Activated Sludge Wastewater Treatment Plant, in: International Journal of Chemical Reactor Engineering, 2008, vol. 6, A63 p.
• 78G. Bastin, D. Dochain.
  On-line estimation and adaptative control of bioreactors, Elsevier, 1990.
• 79O. Bernard, G. Bastin.
  On the estimation of the pseudo-stoichiometric matrix for mass balance modeling of biotechnological processes, in: Math. Biosciences, 2005, vol. 193, pp. 51-77.
• 80O. Bernard.
  TELEMAC Deliverable 3.4: Final version of the Telemac advanced control module, 2004.
• 81O. Bernard.
  Hurdles and challenges for modelling and control of microalgae for CO2 mitigation and biofuel production, in: Journal of Process Control, 2011, vol. 21, n^o 10, pp. 1378–1389.
  http://dx.doi.org/10.1016/j.jprocont.2011.07.012
• 82O. Bernard, M. Gautier.
  ODIN: plateforme de supervision de bioreacteur, in: Bioenergiesud, Nîmes, France, 2012.
• 83O. Bernard, M. Gautier.
  ODIN: supervision avancée de procédés de production de bioénergie, in: Journée de la métrologie et de la mesure (J2M), Le Croisic, France, 2012.
• 84O. Bernard, I. Queinnec.
  Dynamic models of biochemical processes: properties of models, in: Bioprocess Control, D. Dochain (editor), Wiley, Hoboken, 2008.
• 85O. Bernard, B. Rémond.
  Validation of a simple model accounting for light and temperature effect on microalgal growth, in: Bioresource Technology, 2012, vol. 123, pp. 520-527.. [ DOI : 10.1016/j.biortech.2012.07.022 ]
  http://hal.inria.fr/hal-00848389
• 86O. Bernard, J. Sainte-Marie, B. Sialve, J.-P. Steyer.
  Hydrodynamics-Biology Coupling for Algae Culture and Biofuel Production, in: ERCIM News, 2013, vol. 92, 47 p.
  http://hal.inria.fr/hal-00850370
• 87E. Charnov.
  Optimal foraging: the marginal value theorem, in: Theoretical Population Biology, 1976, vol. 9, pp. 129-136.
• 88P. Collet.
  Analyse de Cycle de Vie de la valorisation énergétique de la biomasse algale : prise en compte des aspects dynamiques dans l'étape d'inventaire, University Montpellier II, 2012.
• 89P. Collet, A. Hélias, L. Lardon, M. Ras, R.-A. Goy, J.-P. Steyer.
  Life-cycle assessment of microalgae culture coupled to biogas production, in: Bioresource Technology, 2011, vol. 102, pp. 207-214.
  http://dx.doi.org/10.1016/j.biortech.2010.06.154
• 90P. Collet, J. Langlois, M. Cornelus, L. Lardon, J.-P. Steyer, O. Bernard, A. Hélias.
  Environmental assessment and ecodesign perspectives, in: Ecotech-tools conference, Montpellier, France, 2011.
• 91P. Collet, L. Lardon, A. Hélias, S. Bricout, I. Lombaert-Valot, B. Perrier, O. Lépine, J.-P. Steyer, O. Bernard.
  Can we produce biofuel from microalgae without a renewable source of electricity and heat?, in: Algn'n'Chem conference, Montpellier, France, 2011.
• 92C. G. Diéguez, E. Roca, O. Bernard.
  Reduction of the Anaerobic Digestion Model N${}^{\circ }$1 for an industrial wastewater treatment plant by Principal Component Analysis, in: Proc. of the 10th ECC conference, Budapest, Hungary, 2009.
• 93F. Hamelin, M. Castel, S. Poggi, D. Andrivon, L. Mailleret.
  Seasonality and the evolutionary divergence of plant parasites, in: Ecology, 2011, vol. 92, pp. 2159-2166.
  http://hal-agrocampus-ouest.archives-ouvertes.fr/hal-00729263
• 94P. Hartmann, Q. Bechet, O. Bernard.
  Interaction between Time Scales in Microalgae Based Processes, in: 20th Mediterranean Conference on Control & Automation (MED), Barcelona, Espagne, IEEE, 2012, pp. 561–566. [ DOI : 10.1109/MED.2012.6265697 ]
  http://hal.inria.fr/hal-00848416
• 95L. Lardon, A. Hélias, B. Sialve, J.-P. Steyer, O. Bernard.
  Life-Cycle Assessment of Biodiesel Production from Microalgae, in: Environ. Sci. Technol., 2009, vol. 43, pp. 6475-6481.
• 96M. Le Chevanton, M. Garnier, G. Bougaran, N. Schreiber, E. Lukomska, J.-B. Bérard, E. Fouilland, O. Bernard, J.-P. Cadoret.
  Screening and selection of growth-promoting bacteria for ıt Dunaliella cultures, in: Algal Research, 2013, vol. 2, pp. 212–222. [ DOI : 10.1016/j.algal.2013.05.003 ]
  http://hal.inria.fr/hal-00852257
• 97A. Lebon, L. Mailleret, F. Grognard, Y. Dumont.
  Modelling plant compensatory effects in plant-insect dynamics, 2012, pp. 212-219. [ DOI : 10.1109/PMA.2012.6524836 ]
  http://hal.inria.fr/hal-00848422
• 98L. Mailleret, M. Castel, J. Montarry, F. Hamelin.
  From elaborate to compact seasonal plant epidemic models and back: is competitive exclusion in the details?, in: Theoretical Ecology, 2012, vol. 5, pp. 311-324.
  http://hal.inria.fr/hal-00848425
• 99L. Mailleret, V. Lemesle.
  A note on semi-discrete modelling in the life sciences, in: Philosophical Transactions of the Royal Society A: Mathematical,Physical and Engineering Sciences, 2009, vol. 367, n^o 1908, pp. 4779-4799. [ DOI : 10.1098/rsta.2009.0153 ]
  http://rsta.royalsocietypublishing.org/content/367/1908/4779.abstract
• 100F. Mairet, O. Bernard, E. Cameron, M. Ras, L. Lardon, J.-P. Steyer, B. Chachuat.
  Three-reaction model for the anaerobic digestion of microalgae, in: Biotech. Bioeng., 2012, vol. 109, n^o 2, pp. 415-425.
  http://hal.inria.fr/hal-00848426
• 101F. Mairet, O. Bernard, T. Lacour, A. Sciandra.
  Modelling microalgae growth in nitrogen limited photobiorector for estimating biomass, carbohydrate and neutral lipid productivities, in: IFAC World Congress, Milano, Italy, 2011.
• 102F. Mairet, O. Bernard, M. Ras, L. Lardon, J.-P. Steyer.
  Modeling anaerobic digestion of microalgae using ADM1, in: Bioresource Technology, 2011, vol. 102, n^o 13, pp. 6823–6829.
  http://hal.inria.fr/hal-00848429
• 103P. Masci, O. Bernard, F. Grognard.
  Continuous Selection of the Fastest Growing Species in the Chemostat, in: Proceedings of the IFAC conference, Seoul, Korea, 2008.
• 104C. Mocquet, O. Bernard, A. Sciandra.
  Cell cycle modelling for microalgae grown under light/dark cycles, 2010, vol. 11, pp. 174-179. [ DOI : 10.3182/20100707-3-BE-2012.0072 ]
  http://hal.inria.fr/hal-00847298
• 105S. Nundloll.
  Dos and don'ts in augmentative biological control: insights from mathematical modelling, Université de Nice-Sophia Antipolis, 2010.
• 106J. Rodriguez, E. Roca, J. Lema, O. Bernard.
  Determination of the adequate minimum model complexity required in anaerobic bioprocesses using experimental data, in: J. Chem. Tech. Biotech., 2008, vol. 83, pp. 1694-1702.
• 107B. Sialve, N. Bernet, O. Bernard.
  Anaerobic digestion of microalgae as a necessary step to make microalgal biodiesel sustainable, in: Biotechnol. Advances, 2009, vol. 27, pp. 409-416.
• 108B. Sialve, J.-P. Steyer, E. Latrille, O. Bernard, G. Bougaran, R. Kaas, J.-P. Cadoret.
  Procédé de fixation de CO2 et de traitement des déchets organiques par couplage d'un système de digestion anaérobie et d'un système de production de microorganismes phytoplanctoniques, 2009, n^o 09/50334.
• 109Task Group for Mathematical Modelling of Anaerobic Digestion Processes, I. W. A..
  Anaerobic Digestion Model No. 1 (ADM1), IWA Publishing, London, 2002.