Project-Team Visages
Members
Overall Objectives
Research Program
Application Domains
Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
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Bibliography

Major publications by the team in recent years
  • 1C. Ciofolo, C. Barillot.
    Atlas-based segmentation of 3D cerebral structures with competitive level sets and fuzzy control, in: Medical Image Analysis, 2009, vol. 13, no 3, pp. 456–470.
  • 2P. Coupé, P. Hellier, C. Kervrann, C. Barillot.
    NonLocal Means-based Speckle Filtering for Ultrasound Images, in: IEEE Transactions on Image Processing, 2009.
  • 3P. Coupé, P. Yger, S. Prima, P. Hellier, C. Kervrann, C. Barillot.
    An Optimized Blockwise Non Local Means Denoising Filter for 3D Magnetic Resonance Images, in: IEEE Transactions on Medical Imaging, April 2008, vol. 27, no 4, pp. 425-441.
    http://hal.inria.fr/inria-00332014/en/
  • 4C. De Guibert, C. Maumet, J.-C. Ferré, P. Jannin, A. Biraben, C. Allaire, C. Barillot, E. Le Rumeur.
    FMRI language mapping in children: A panel of language tasks using visual and auditory stimulation without reading or metalinguistic requirements, in: NeuroImage, February 2010, vol. 51, no 2, pp. 897–909.
    http://www.hal.inserm.fr/inserm-00461666/en/
  • 5C. Haegelen, D. García-Lorenzo, F. Le Jeune, J. Peron, B. Gibaud, L. Riffaud, G. Brassier, C. Barillot, M. Verin, X. Morandi.
    SPECT and PET analysis of subthalamic stimulation in Parkinson's disease: analysis using a manual segmentation, in: J Neurol, 2010, vol. 257, no 3, pp. 375-82.
  • 6P. Jannin, X. Morandi.
    Surgical models for computer-assisted neurosurgery, in: Neuroimage, 2007, vol. 37, no 3, pp. 783–91.
  • 7F. Lalys, C. Haegelen, J.-C. Ferré, O. El-Ganaoui, P. Jannin.
    Construction and assessment of a 3T MRI brain template, in: Neuroimage, 2010, vol. 49, no 1, pp. 345-354. [ DOI : 10.1016/j.neuroimage.2009.08.007 ]
    http://www.hal.inserm.fr/inserm-00546487/en/
  • 8A. Mechouche, X. Morandi, C. Golbreich, B. Gibaud.
    A Hybrid System Using Symbolic and Numeric Knowledge for the Semantic Annotation of Sulco-Gyral Anatomy in Brain MRI Images, in: IEEE Transactions on Medical Imaging, August 2009, vol. 28, no 8, pp. 1165–1178.
  • 9F. Rousseau, P. Hellier, C. Barillot.
    A Novel Temporal Calibration Method for 3-D Ultrasound, in: IEEE Transactions on Medical Imaging, August 2006, vol. 25, no 8, pp. 1108–1112.
    http://hal.inria.fr/inria-00001215/en/
  • 10L. Temal, M. Dojat, G. Kassel, B. Gibaud.
    Towards an ontology for sharing medical images and regions of interest in neuroimaging, in: J Biomed Inform, 2008, vol. 41, no 5, pp. 766–778.
    http://www.hal.inserm.fr/inserm-00344293/en/
Publications of the year

Doctoral Dissertations and Habilitation Theses

  • 11C. Maumet.
    Des études de groupe aux analyses individuelles dans l'exploration de la fonction cérébrale en imagerie de perfusion par marquage de spins et en IRM fonctionnelle BOLD, Université Rennes 1, May 2013.
    http://hal.inria.fr/tel-00863908

Articles in International Peer-Reviewed Journals

  • 12A. Balzeau, D. Grimaud-Hervé, F. Détroit, R. Holloway, B. Combès, S. Prima.
    First description of the Cro-Magnon 1 endocast and study of brain variation and evolution in anatomically modern Homo sapiens, in: Bulletins et Mémoires de la Société d'Anthropologie de Paris, April 2013, vol. 25, no 1-2, pp. 1-18. [ DOI : 10.1007/s13219-012-0069-z ]
    http://hal.inria.fr/inserm-00853862
  • 13A. Esquevin, H. Raoult, S. Belliard, I. Corouge, E. Bannier, F. Lejeune, C. Barillot, J.-C. Ferré, J.-Y. Gauvrit.
    Étude de la perfusion cérébrale par Arterial Spin Labeling : principes et applications en neurosciences cliniques, in: Revue de Neuropsychologie, 2013, vol. 5, no 2, pp. 135-141. [ DOI : 10.1684/nrp.2013.0265 ]
    http://hal.inria.fr/inserm-00856795
  • 14A. Esquevin, H. Raoult, J.-C. Ferré, T. Ronzière, A. Stamm, M. Perennes, A. Bellou, J.-Y. Gauvrit.
    Systematic combined noncontrast CT-CT angiography in the management of unexplained nontraumatic coma, in: American Journal of Emergency Medicine, March 2013, vol. 31, no 3, pp. 494-8. [ DOI : 10.1016/j.ajem.2012.09.024 ]
    http://hal.inria.fr/inserm-00845285
  • 15J.-C. Ferré, E. Bannier, H. Raoult, G. Mineur, B. Carsin-Nicol, J.-Y. Gauvrit.
    Arterial spin labeling (ASL) perfusion: Techniques and clinical use, in: Diagn Interv Imaging, July 2013. [ DOI : 10.1016/j.diii.2013.06.010 ]
    http://hal.inria.fr/inserm-00845183
  • 16J.-C. Ferré, E. Niederberger, X. Morandi, H. Raoult, B. Carsin-Nicol, J.-Y. Gauvrit.
    Anatomical variations of the anterior cerebral arterial circle visualized by multidetector computed tomography angiography: comparison with 3D rotational angiography, in: Journal de Neuroradiologie / Journal of Neuroradiology, May 2013, vol. 40, no 2, pp. 112-20. [ DOI : 10.1016/j.neurad.2012.05.009 ]
    http://hal.inria.fr/inserm-00845277
  • 17J.-C. Ferré, J. Petr, C. Barillot, H. Raoult, J.-Y. Gauvrit.
    Optimal individual inversion time in brain arterial spin labeling perfusion magnetic resonance imaging: correlation with carotid hemodynamics measured with cine phase-contrast magnetic resonance imaging, in: Journal of Computer Assisted Tomography, 2013, vol. 37, no 2, pp. 247-51. [ DOI : 10.1097/RCT.0b013e31827cd548 ]
    http://hal.inria.fr/inserm-00845274
  • 18M. Garetier, J. Rousset, E. Pearson, V. Tissot, J.-C. Gentric, E. Nowak, J.-C. Ferre, S. Timsit, D. B. Salem.
    Value of spontaneous hyperdensity of cerebral venous thrombosis on helical CT, in: Acta Radiologica, November 2013. [ DOI : 10.1177/0284185113513977 ]
    http://hal.inria.fr/hal-00934623
  • 19J.-C. Gentric, P. Jannin, B. Trelhu, L. Riffaud, H. Raoult, J.-C. Ferré, J.-Y. Gauvrit.
    Effects of low-dose protocols in endovascular treatment of intracranial aneurysms: development of workflow task analysis during cerebral endovascular procedures, in: American Journal of Roentgenology, August 2013, vol. 201, no 2. [ DOI : 10.2214/AJR.12.9855 ]
    http://hal.inria.fr/inserm-00857167
  • 20J.-C. Gentric, G. Koch, M. Lesoeur, T. Hebert, M. Nonent.
    Diagnosis and management of puerperal hematomas: two cases, in: CardioVascular and Interventional Radiology, August 2013, vol. 36, no 4, pp. 1174-6. [ DOI : 10.1007/s00270-012-0504-z ]
    http://hal.inria.fr/hal-00934632
  • 21J.-C. Gentric, B. Trelhu, P. Jannin, L. Riffaud, J.-C. Ferré, J.-Y. Gauvrit.
    Development of workflow task analysis during cerebral diagnostic angiographies: Time-based comparison of junior and senior tasks, in: Journal de Neuroradiologie / Journal of Neuroradiology, July 2013, pp. 342-347. [ DOI : 10.1016/j.neurad.2013.01.002 ]
    http://hal.inria.fr/inserm-00845190
  • 22C. Haegelen, P. Coupé, V. Fonov, N. Guizard, P. Jannin, X. Morandi, D. L. Collins.
    Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson's disease, in: International Journal of Computer Assisted Radiology and Surgery, January 2013, vol. 8, no 1, pp. 99-110. [ DOI : 10.1007/s11548-012-0675-8 ]
    http://hal.inria.fr/hal-00683777
  • 23C. Maumet, P. Maurel, J.-C. Ferré, C. Barillot.
    Robust estimation of the cerebral blood flow in arterial spin labelling, in: Magnetic Resonance Imaging, February 2014, in Press. [ DOI : 10.1016/j.mri.2014.01.016 ]
    http://hal.inria.fr/inserm-00942814
  • 24C. Maumet, P. Maurel, J.-C. Ferré, B. Carsin, C. Barillot.
    Patient-specific detection of perfusion abnormalities combining within-subject and between-subject variances in Arterial Spin Labeling, in: NeuroImage, May 2013, vol. 81C, pp. 121-130. [ DOI : 10.1016/j.neuroimage.2013.04.079 ]
    http://hal.inria.fr/inserm-00816852
  • 25J. Petr, J.-C. Ferré, H. Raoult, E. Bannier, J.-Y. Gauvrit, C. Barillot.
    Template-based approach for detecting motor task activation-related hyperperfusion in pulsed ASL data, in: Human Brain Mapping, February 2013. [ DOI : 10.1002/hbm.22243 ]
    http://hal.inria.fr/inserm-00800899
  • 26I. Ract, J.-C. Ferré, T. Ronzière, E. Leray, B. Carsin-Nicol, J.-Y. Gauvrit.
    Improving detection of ischemic lesions at 3Tesla with optimized diffusion-weighted magnetic resonance imaging, in: Journal de Neuroradiologie / Journal of Neuroradiology, June 2013. [ DOI : 10.1016/j.neurad.2013.04.003 ]
    http://hal.inria.fr/inserm-00845255
  • 27H. Raoult, E. Bannier, B. Robert, C. Barillot, P. Schmitt, J.-Y. Gauvrit.
    Time-resolved Spin-labeled MR Angiography for the Depiction of Cerebral Arteriovenous Malformations: A Comparison of Techniques, in: Radiology, December 2013. [ DOI : 10.1148/radiol.13131252 ]
    http://hal.inria.fr/inserm-00945211
  • 28H. Raoult, F. Eugène, J.-C. Ferré, J.-C. Gentric, T. Ronzière, A. Stamm, J.-Y. Gauvrit.
    Prognostic factors for outcomes after mechanical thrombectomy with solitaire stent, in: Journal de Neuroradiologie / Journal of Neuroradiology, May 2013, pp. 252-259. [ DOI : 10.1016/j.neurad.2013.04.001 ]
    http://hal.inria.fr/inserm-00845262
  • 29H. Raoult, J.-Y. Gauvrit, P. Schmitt, V. Le Couls, E. Bannier.
    Non-ECG-gated unenhanced MRA of the carotids: Optimization and clinical feasibility, in: European Radiology, June 2013, pp. 3020-3028. [ DOI : 10.1007/s00330-013-2931-x ]
    http://hal.inria.fr/inserm-00845210
  • 30P. Secchi, A. Stamm, S. Vantini.
    Inference for the Mean of Large p Small n Data: a Finite-Sample High-Dimensional Generalization of Hotelling's Theorem, in: Electronic Journal of Statistics, August 2013, vol. 7. [ DOI : 10.1214/13-EJS833 ]
    http://hal.inria.fr/inserm-00858214
  • 31R. Seizeur, E. Magro, S. Prima, N. Wiest-Daesslé, C. Maumet, X. Morandi.
    Corticospinal tract asymmetry and handedness in right- and left-handers by diffusion tensor tractography, in: Surgical and Radiologic Anatomy, June 2013, pp. 111-124. [ DOI : 10.1007/s00276-013-1156-7 ]
    http://hal.inria.fr/inserm-00853861
  • 32M. Taquet, B. Scherrer, O. Commowick, J. Peters, M. Sahin, B. Macq, S. Warfield.
    A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure, in: IEEE Transactions on Medical Imaging, October 2013, pp. 1-14. [ DOI : 10.1109/TMI.2013.2289381 ]
    http://hal.inria.fr/inserm-00903679
  • 33I. Vidal-Migallón, O. Commowick, X. Pennec, J. Dauguet, T. Vercauteren.
    GPU & CPU implementation of Young - Van Vliet's Recursive Gaussian Smoothing Filter, in: Insight Journal (ITK), July 2013, 16 p, Open peer-review journal. Open code / open data.
    http://hal.inria.fr/inserm-00855958

International Conferences with Proceedings

  • 34F. Cao, O. Commowick, C. Maumet, C. Barillot.
    Quantitative Relaxation Templates for the Human Brain at 3T, in: IEEE International Symposium on Biomedical Imaging, China, April 2014.
    http://hal.inria.fr/inserm-00950843
  • 35I. Corouge, E. Bannier, D. Travers, C. Maumet, J.-C. Ferré, A. Patat, D. Drapier, C. Barillot.
    Functional Arterial Spin Labeling during a working memory task MRI at 3T. Comparison with BOLD fMRI, in: ESMRMB, Toulouse, France, October 2013.
    http://hal.inria.fr/inserm-00936671
  • 36A. Crimi, O. Commowick, J.-C. Ferre, A. Maarouf, G. Edan, C. Barillot.
    Multiple Sclerosis Lesions Evolution in Patients with Clinically Isolated Syndrome, in: SPIE Medical Imaging 2013: Image Processing, United States, February 2013.
    http://hal.inria.fr/inserm-00781478
  • 37A. Crimi, O. Commowick, J.-C. Ferré, A. Maarouf, G. Edan, C. Barillot.
    Semi-Automatic Classification of Lesion Patterns in Patients with Clinically Isolated Syndrome, in: International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, United States, April 2013, pp. 1102-1105. [ DOI : 10.1109/ISBI.2013.6556671 ]
    http://hal.inria.fr/inserm-00800723
  • 38A. Esquevin, J.-C. Ferré, F. Lejeune, I. Corouge, A. Stamm, C. Merck, E. Bannier, S. Belliard, C. Barillot, J.-Y. Gauvrit.
    Arterial Spin Labeling in Semantic Dementia: Hypoperfusion's Detection and Diagnostic Accuracy. Could It Make as Well as FDG-PET?, in: RSNA, France, November 2013.
    http://hal.inria.fr/inserm-00936680
  • 39G. Koch, E. Bannier, A. Baumann, S. Ferragut, M. Lamard, C. Barillot, E. Stindel, R. Seizeur.
    3D visual fMRI using binocular stimulation, in: ESMRMB, Toulouse, France, October 2013.
    http://hal.inria.fr/inserm-00858344
  • 40A. Maarouf, J.-C. Ferre, W. Zaaraoui, E. Bannier, C. Barillot, I. Berry, G. Edan, D. Galanaud, J. Pelletier, C. Portefaix, A. Tourbah, J. P. Ranjeva, B. Audoin.
    Impact of Macrophagic Activity on Tissue Structure in Patients Suffering from Clinically Isolated Syndrome Suggestive of Multiple Sclerosis: A Multicentric USPIO Enhancement Study at 3T, in: ISMRM, Salt Lake City, France, April 2013, 50 p.
    http://hal.inria.fr/inserm-00858282
  • 41M. Mani, A. Srivastava, C. Barillot.
    Morphological changes in the corpus callosum: A study using a joint Riemannian feature spaces, in: SPIE Medical Imaging: Image Processing, Orlando, FL, United States, S. Ourselin, D. R. Haynor (editors), Medical Imaging, SPIE, February 2013, vol. 8669, 6 p. [ DOI : 10.1117/12.2007226 ]
    http://hal.inria.fr/inserm-00851511
  • 42C. Maumet, P. Maurel, J.-C. Ferré, C. Barillot.
    An a contrario approach for the detection of activated brain areas in fMRI, in: International Society for Magnetic Resonance in Medicine 21st Annual Meeting & Exhibition (ISMRM), Salt Lake City, United States, April 2013.
    http://hal.inria.fr/inserm-00784860
  • 43C. Maumet, P. Maurel, J.-C. Ferré, C. Barillot.
    Robust perfusion maps in Arterial Spin Labeling by means of M-estimators, in: International Society for Magnetic Resonance in Medicine 21st Annual Meeting & Exhibition (ISMRM), Salt Lake City, United States, April 2013.
    http://hal.inria.fr/inserm-00784862
  • 44S. Prima, O. Commowick.
    Multimodal rigid-body registration of 3D brain images using bilateral symmetry, in: Medical Imaging 2013: Image Processing, Lake Buena Vista (Orlando Area), United States, S. Ourselin, D. R. Haynor (editors), SPIE, March 2013, vol. 8669. [ DOI : 10.1117/12.2007075 ]
    http://hal.inria.fr/inserm-00766642
  • 45S. Prima, O. Commowick.
    Using bilateral symmetry to improve non-local means denoising of MR brain images, in: 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'2013), San Francisco, United States, April 2013, pp. 1-8. [ DOI : 10.1109/ISBI.2013.6556703 ]
    http://hal.inria.fr/inserm-00804377
  • 46S. Prima, G. Subsol, J. Braga, J. F. Garamendi Bragado, B. Combès, J. Dumoncel, D. Falk.
    Comparison of endocranial and ectocranial "symmetry planes" and application to the virtual reconstruction of hominid fossils, in: 82nd annual meeting of the American Association of Physical Anthropologists, Knoxville, United States, April 2013. [ DOI : 10.1002/ajpa.22247 ]
    http://hal.inria.fr/inserm-00767670
  • 47S. Prima, G. Subsol, J. Braga, J. Garamendi, B. Combès, J. Dumoncel, D. Falk.
    Reconstruction numérique de l'endocrâne de l'enfant de Taung, in: Colloque annuel de la société d'anthropologie de Paris 1838e Réunion scientifique, Paris, France, January 2013. [ DOI : 10.1007/s13219-012-0077-z ]
    http://hal.inria.fr/inserm-00935232
  • 48H. Raoult, E. Bannier, B. Robert, P. Schmitt, J.-Y. Gauvrit.
    Non-Contrast-Enhanced High-Temporal-Resolution 4D MRA with an Acquisition Window Covering Two Cardiac Cycles: Assessment of Arteriovenous Malformations in the Brain, in: ISMRM, Salt Lake City, United States, April 2013.
    http://hal.inria.fr/inserm-00858274
  • 49H. Raoult, J.-Y. Gauvrit, V. Le Couls, P. Schmitt, E. Bannier.
    Non-Contrast-Enhanced MRA of the Carotids :Feasibility of a Non-ECG-Gated Sequence Over an Extended Field of View, in: ISMRM, Salt Lake City, United States, April 2013.
    http://hal.inria.fr/inserm-00858288
  • 50H. Raoult, J.-Y. Gauvrit, V. Le Couls, P. Schmitt, E. Bannier.
    Non-ECG gated unhanced MRA for carotid stenosis diagnosis, in: ESMRMB, Toulouse, France, October 2013.
    http://hal.inria.fr/inserm-00856024
  • 51A. Stamm, O. Commowick, C. Barillot, P. Perez.
    Adaptive Multi-modal Particle Filtering for Probabilistic White Matter Tractography, in: Information Processing in Medical Imaging, Monterey, United States, LNCS, July 2013, vol. 7917, pp. 594-606. [ DOI : 10.1007/978-3-642-38868-2_50 ]
    http://hal.inria.fr/inserm-00849053
  • 52A. Stamm, O. Commowick, P. Perez, C. Barillot.
    Tracking the Cortico-Spinal Tract from Low Spatial and Angular Resolution Diffusion MRI, in: MICCAI 2013 DTI Tractography Challenge on Peritumoral White Matter Anatomy for Neurosurgical Decision-Making, Japan, September 2013, pp. 43-53.
    http://hal.inria.fr/inserm-00849274
  • 53E. Vallee, O. Commowick, C. Maumet, A. Stamm, E. Le Rumeur, C. Allaire, J.-C. Ferre, C. De Guibert, C. Barillot.
    Statistical Analysis of White Matter Integrity for the Clinical Study of Specific Language Impairment in Children, in: MICCAI 2013 Workshop on Computational Diffusion MRI, Japan, September 2013, pp. 187-195. [ DOI : 10.1007/978-3-319-02475-2_17 ]
    http://hal.inria.fr/inserm-00849267

Conferences without Proceedings

  • 54A. Esquevin, I. Corouge, F. Lejeune, J.-C. Ferré, E. Bannier, C. Merck, S. Belliard, C. Barillot, J.-Y. Gauvrit.
    Arterial spin labeling magnetic resonance and fluorodeoxyglucose-positron emission tomography imaging in semantic dementia: group voxel-wise analysis, in: European Congress of Radiology (ECR), Austria, March 2013.
    http://hal.inria.fr/inserm-00772597

Internal Reports

  • 55C. Maumet, P. Maurel, B. Carsin, J.-C. Ferré, C. Barillot.
    Patient-Specific Detection of Perfusion Abnormalities Combining Within- and Between-Subject Variances in ASL, Inria, January 2013, no RR-8216.
    http://hal.inria.fr/hal-00781247
  • 56L. Yu, P. Maurel, C. Barillot, R. Gribonval.
    Quantifying CBF from Aterial Spin Labeling via Diverse-TI: sampling diversity or repetitions ?, Inria, March 2013, no RR-8258.
    http://hal.inria.fr/hal-00799718
References in notes
  • 57A. Abadie, B. Combès, C. Haegelen, S. Prima.
    CLARCS, a C++ Library for Automated Registration and Comparison of Surfaces: Medical Applications, in: MICCAI Workshop on Mesh Processing in Medical Image Analysis (MeshMed'2011), Toronto, Canada, September 2011, pp. 117-126.
    http://hal.inria.fr/inria-00626270/en
  • 58B. Combès, S. Prima.
    A new efficient EM-ICP algorithm for non-linear registration of 3D point sets, Inria, January 2012, no RR-7853.
    http://hal.inria.fr/hal-00656388

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