Bibliography

Publications of the year

Doctoral Dissertations and Habilitation Theses

• 1H. Talbot.
  Interactive Patient-Specific Simulation of Cardiac Electrophysiology, Université des Sciences et Technologies de Lille, July 2014.
  https://hal.inria.fr/tel-01097201

Articles in International Peer-Reviewed Journals

• 2A. Amelot, E. Stretton, H. Delingette, N. Ayache, S. Froelich, E. Mandonnet.
  Expert-validated CSF segmentation of MNI atlas enhances accuracy of virtual glioma growth patterns, in: Journal of Neuro-Oncology, 2014, forthcoming. [ DOI : 10.1007/s11060-014-1645-5 ]
  https://hal.inria.fr/hal-01081410
• 3Y. Komatsu, A. Jadidi, F. Sacher, A. Denis, M. Daly, N. Derval, A. Shah, H. Lehrmann, C.-I. Park, R. Weber, T. Arentz, G. Pache, M. Sermesant, N. Ayache, J. Relan, M. Montaudon, F. Laurent, M. Hocini, M. Haissaguerre, P. Jais, H. Cochet.
  Relationship Between MDCT-Imaged Myocardial Fat and Ventricular Tachycardia Substrate in Arrhythmogenic Right Ventricular Cardiomyopathy, in: Journal of the American Heart Association, 2014, vol. 3, n^o 4, 10 p. [ DOI : 10.1161/JAHA.114.000935 ]
  https://hal.inria.fr/hal-01095772
• 4H. Lombaert, L. Grady, X. Pennec, N. Ayache, F. Cheriet.
  Spectral Log-Demons: Diffeomorphic Image Registration with Very Large Deformations, in: International Journal of Computer Vision, May 2014, vol. 107, n^o 3, pp. 254-271. [ DOI : 10.1007/s11263-013-0681-5 ]
  https://hal.inria.fr/hal-00979616
• 5M. Lorenzi, X. Pennec, G. B. Frisoni, N. Ayache.
  Disentangling Normal Aging from Alzheimer's Disease in Structural MR Images, in: Neurobiology of Aging, September 2014. [ DOI : 10.1016/j.neurobiolaging.2014.07.046 ]
  https://hal.inria.fr/hal-01061017
• 6B. Menze, A. Jakab, S. Bauer, J. Kalpathy-Cramer, K. Farahani, J. Kirby, Y. Burren, N. Porz, J. Slotboom, R. Wiest, L. Lanczi, E. Gerstner, M.-A. Weber, T. Arbel, B. Avants, N. Ayache, P. Buendia, L. Collins, N. Cordier, J. Corso, A. Criminisi, T. Das, H. Delingette, C. Demiralp, C. Durst, M. Dojat, S. Doyle, J. Festa, F. Forbes, E. Geremia, B. Glocker, P. Golland, X. Guo, A. Hamamci, K. Iftekharuddin, R. Jena, N. John, E. Konukoglu, D. Lashkari, J. Antonio Mariz, R. Meier, S. Pereira, D. Precup, S. J. Price, T. Riklin-Raviv, S. Reza, M. Ryan, L. Schwartz, H.-C. Shin, J. Shotton, C. Silva, N. Sousa, N. Subbanna, G. Szekely, T. Taylor, O. Thomas, N. Tustison, G. Unal, F. Vasseur, M. Wintermark, D. Hye Ye, L. Zhao, B. Zhao, D. Zikic, M. Prastawa, M. Reyes, K. Van Leemput.
  The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS), in: IEEE Transactions on Medical Imaging, 2014, 33 p. [ DOI : 10.1109/TMI.2014.2377694 ]
  https://hal.inria.fr/hal-00935640
• 7A. Porras, M. Alessandrini, M. De Craene, N. Duchateau, M. Sitges, B. Bijnens, H. Delingette, M. Sermesant, J. D'Hooge, A. Frangi, G. Piella.
  Improved Myocardial Motion Estimation Combining Tissue Doppler and B-Mode Echocardiographic Images, in: IEEE Transactions on Medical Imaging, June 2014, vol. 33, n^o 11, pp. 2098 - 2106. [ DOI : 10.1109/TMI.2014.2331392 ]
  https://hal.inria.fr/hal-01095151
• 8A. Suinesiaputra, B. Cowan, A. O. Al-Agamy, M. A. Alattar, N. Ayache, A. S. Fahmy, A. M. Khalifa, P. Medrano-Gracia, M.-P. Jolly, A. H. Kadish, D. C. Lee, J. Margeta, S. K. Warfield, A. Young.
  A Collaborative Resource to Build Consensus for Automated Left Ventricular Segmentation of Cardiac MR Images, in: Medical Image Analysis, 2014, vol. 18, n^o 1, pp. 50-62. [ DOI : 10.1016/j.media.2013.09.001 ]
  https://hal.inria.fr/hal-00857223
• 9Y. Tarabalka, G. Charpiat, L. Brucker, B. Menze.
  Spatio-Temporal Video Segmentation with Shape Growth or Shrinkage Constraint, in: IEEE Transactions on Image Processing, September 2014, vol. 23, n^o 9, pp. 3829-3840.
  https://hal.inria.fr/hal-01052543
• 10K. C. Wong, M. Sermesant, K. Rhode, M. Ginks, C. Aldo Rinaldi, R. Razavi, H. Delingette, N. Ayache.
  Velocity-based cardiac contractility personalization from images using derivative-free optimization, in: Journal of the mechanical behavior of biomedical materials, December 2014, 17 p. [ DOI : 10.1016/j.jmbbm.2014.12.002 ]
  https://hal.inria.fr/hal-01095725

International Conferences with Proceedings

• 11M. Alessandrini, B. Heyde, S. Cygan, M. Sermesant, H. Delingette, O. Bernard, D. Craene, J. D'Hooge.
  Elastic registration vs. block matching for quantification of cardiac function with 3D ultrasound: Initial results of a direct comparison in silico based on a new evaluation pipeline, in: IEEE International Ultrasonics Symposium, Chicago, United States, September 2014, pp. 608 - 611. [ DOI : 10.1109/ULTSYM.2014.0149 ]
  https://hal.inria.fr/hal-01095790
• 13R. Cabrera Lozoya, J. Margeta, L. Le Folgoc, Y. Komatsu, B. Benjamin, J. Relan, H. Cochet, M. Haissaguerre, P. Jais, N. Ayache, M. Sermesant.
  Confidence-based Training for Clinical Data Uncertainty in Image-based Prediction of Cardiac Ablation Targets, in: bigMCV Workshop MICCAI 2014, Boston, United States, September 2014.
  https://hal.inria.fr/hal-01069085
• 14M. De Craene, M. Alessandrini, P. Allain, S. Marchesseau, I. Waechter-Stehle, J. Weese, E. Saloux, H. G. Morales, R. Cuingnet, H. Delingette, M. Sermesant, O. Bernard, J. D 'hooge.
  Generation of ultra-realistic synthetic echocardiographic sequences, in: IEEE 11th International Symposium on Biomedical Imaging (ISBI), Beijing, China, IEEE, April 2014, pp. 73 - 76. [ DOI : 10.1109/ISBI.2014.6867812 ]
  https://hal.inria.fr/hal-01095133
• 15S. Giffard-Roisin, S. Marchesseau, L. Le Folgoc, H. Delingette, M. Sermesant.
  Evaluation of Personalised Canine Electromechanical Models, in: Proceedings of the 5th international STACOM workshop, Boston, United States, O. Camara, T. Mansi, M. Pop, K. Rhode, M. Sermesant, A. Young (editors), Springer, September 2014, n^o 8896.
  https://hal.inria.fr/hal-01087841
• 16P. Gori, O. Colliot, L. Marrakchi-Kacem, Y. Worbe, F. De Vico Fallani, M. Chavez, S. Lecomte, C. Poupon, A. Hartmann, N. Ayache, S. Durrleman.
  A Prototype Representation to Approximate White Matter Bundles with Weighted Currents, in: MICCAI 2014 - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Boston, United States, September 2014.
  https://hal.inria.fr/hal-01010702
• 17B. Khanal, M. Lorenzi, N. Ayache, X. Pennec.
  A Biophysical Model of Shape Changes due to Atrophy in the Brain with Alzheimer's Disease, in: MICCAI 2014 - 17th International Conference Medical Image Computing and Computer-Assisted Intervention, Boston, United States, P. Golland, N. Hata, C. Barillot, J. Hornegger, R. Howe (editors), LNCS - Lecture Notes in Computer Science, Springer, Springer, September 2014, vol. 8674, pp. 41-48. [ DOI : 10.1007/978-3-319-10470-6_6 ]
  https://hal.inria.fr/hal-01006478
• 18M. Kohandani Tafreshi, N. Linard, B. André, N. Ayache, T. Vercauteren.
  Semi-automated Query Construction for Content-based Endomicroscopy Video Retrieval, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), Boston, United States, September 2014.
  https://hal.inria.fr/hal-01010673
• 19M. Kohandani Tafreshi, B. Napoléon, A.-I. Lemaistre, M. Giovannini, V. Joshi, J. Dauguet, N. Ayache, B. André.
  Smart Atlas for Supporting the Interpretation of needle-based Confocal Laser Endomicroscopy (nCLE) of Pancreatic Cysts: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition, in: Digestive Disease Week (DDW 2014), Chicago, United States, May 2014.
  https://hal.inria.fr/hal-01010701
• 20L. Le Folgoc, H. Delingette, A. Criminisi, N. Ayache.
  Sparse Bayesian Registration, in: MICCAI - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Boston, United States, September 2014. [ DOI : 10.1007/978-3-319-10404-1_30 ]
  https://hal.inria.fr/hal-01006605
• 21H. Lombaert, D. Zikic, A. Criminisi, N. Ayache.
  Laplacian Forests: Semantic Image Segmentation by Guided Bagging, in: MICCAI 2014 - 17th International Conference Medical Image Computing and Computer-Assisted Intervention, Boston, United States, P. Golland, N. Hata, C. Barillot, J. Hornegger, R. Howe (editors), LNCS - Lecture Notes in Computer Science, Springer, September 2014, vol. 8674. [ DOI : 10.1007/978-3-319-10470-6_62 ]
  https://hal.inria.fr/hal-01009672
• 22M. Lê, H. Delingette, J. Kalpathy-Cramer, E. Gerstner, H. A. Shih, T. Batchelor, J. Unkelbach, N. Ayache.
  Multimodal Analysis of Vasogenic Edema in Glioblastoma Patients for Radiotherapy Planning, in: Workshop Image-Guided Adaptive Radiation Therapy, Boston, United States, September 2014.
  https://hal.inria.fr/hal-01093397
• 23J. Margeta, A. Criminisi, D. C. Lee, N. Ayache.
  Recognizing cardiac magnetic resonance acquisition planes, in: MIUA - Medical Image Understanding and Analysis Conference - 2014, London, United Kingdom, Reyes-Aldasoro, Constantino Carlos and Slabaugh, Gregory, July 2014.
  https://hal.inria.fr/hal-01009952
• 24N. Miolane, X. Pennec.
  Statistics on Lie groups : a need to go beyond the pseudo-Riemannian framework, in: MaxEnt 2014, Amboise, France, September 2014.
  https://hal.inria.fr/hal-01091515
• 25H. Talbot, F. Spadoni, C. Duriez, M. Sermesant, S. Cotin, H. Delingette.
  Interactive Training System for Interventional Electrocardiology Procedures, in: 6th International Symposium on Biomedical Simulation - ISBMS 2014, Strabsourg, France, October 2014, pp. 11 - 19. [ DOI : 10.1007/978-3-319-12057-7_2 ]
  https://hal.inria.fr/hal-01078209

National Conferences with Proceedings

• 26H. Darmanté, B. Bugnas, R. B. D. Dompsure, L. Barresi, N. Miolane, X. Pennec, F. De Paretti, N. Bronsard.
  Analyse biométrique de l’anneau pelvien en 3 dimensions – à propos de 100 scanners, in: 89e Réunion annuelle de la SOFCOT, Paris, France, Revue de Chirurgie Orthopédique et Traumatologique, November 2014, vol. 100, n^o 7. [ DOI : 10.1016/j.rcot.2014.09.076 ]
  https://hal.inria.fr/hal-01094711

Conferences without Proceedings

• 27M. Kohandani Tafreshi, V. Joshi, A. Meining, C. Lightdale, M. Giovannini, J. Dauguet, N. Ayache, B. André.
  Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Biliary Strictures: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition, in: Digestive Disease Week (DDW 2014), Chicago, United States, May 2014.
  https://hal.inria.fr/hal-01010765
• 28M. Kohandani Tafreshi, Y.-Q. Li, R. Pittayanon, D. Pleskow, V. Joshi, P. Chiu, J. Dauguet, N. Ayache, B. André.
  Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Gastric Lesions: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition, in: Digestive Disease Week (DDW 2014), Chicago, United States, May 2014.
  https://hal.inria.fr/hal-01010762

Scientific Books (or Scientific Book chapters)

• 29Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, Lecture notes in computer science, Springer International Publishing, Cambridge, United States, January 2015, vol. 8682, 89 p. [ DOI : 10.1007/978-3-319-14905-9 ]
  https://hal.inria.fr/hal-01114150
• 30A. Frangi, D. Friboulet, N. Ayache, H. Delingette, T. Glatard, C. Hoogendoorn, L. Humbert, K. Lekadir, I. Larrabide, Y. Martelli, F. Peyrin, X. Planes, M. Sermesant, M. Villa-Uriol, T. Whitmarsh, D. Atkinson.
  Image Based Modelling, in: Computational Biomedicine, P. Coveney, V. Diaz, P. Hunter, M. Viceconti (editors), Oxford University Press, 2014, pp. 59 - 82.
  https://hal.archives-ouvertes.fr/hal-01016455
• 31M. Lorenzi, X. Pennec.
  Discrete Ladders for Parallel Transport in Transformation Groups with an Affine Connection Structure, in: Geometric Theory of Information, F. Nielsen (editor), Signals and Communication Technology, Springer, 2014, pp. 243-271. [ DOI : 10.1007/978-3-319-05317-2_9 ]
  https://hal.inria.fr/hal-00933229
• 32X. Pennec, P. Fillard.
  Statistical Computing On Non-Linear Spaces For Computational Anatomy, in: Handbook of Biomedical Imaging: Methodologies and Clinical Research, N. Paragios, J. Duncan, N. Ayache (editors), Springer, 2014, forthcoming.
  https://hal.inria.fr/inria-00616201

Books or Proceedings Editing

• 33S. Durrleman, T. Fletcher, G. Gerig, M. Niethammer, X. Pennec (editors)
  Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, Lecture Notes in Computer Science, Springer, United States, 2015, vol. 8682.
  https://hal.inria.fr/hal-01108202
• 34N. Paragios, J. Duncan, N. Ayache (editors)
  Handbook of Biomedical Imaging: Methodologies and Clinical Research, Springer, 2014, 590 p.
  https://hal.inria.fr/inria-00616178

Internal Reports

• 35M. Bauer, M. Bruveris, P. Harms, B. Khesin, S. Marsland, P. Michor, K. Modin, O. Müller, X. Pennec, S. Sommer, F.-X. Vialard.
  Math in the Cabin - Shape Analysis Workshop in Bad Gastein, Brunel University London ; University of Vienna, July 2014.
  https://hal.archives-ouvertes.fr/hal-01076953

Other Publications

• 36L. Le Folgoc, H. Delingette, A. Criminisi, N. Ayache.
  Technical Appendix on Sparse Bayesian Regression, September 2014, MICCAI - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Technical appendix to a MICCAI 2014 conference paper. Loïc Le Folgoc, Hervé Delingette, Antonio Criminisi, and Nicholas Ayache: Sparse Bayesian Registration.
  https://hal.inria.fr/hal-01002861
• 37C. Vandersteen, T. Demarcy, H. Delingette, C. Raffaelli, J. Laudanski, T. Pourcher, J. Darcourt, P. Franken, D. Gnansia, N. Ayache, N. Guevara.
  Teaching tool for advanced visualization of temporal bone structures by fusion of μCT and CT scan images, October 2014, 8th International Symposium on Objective Measures in Auditory Implants. [ DOI : 10.13140/2.1.1517.6007 ]
  https://hal.inria.fr/hal-01108877
• 38A. S. Vemuri, A. Sportes, S. A. Nicolau, J. Marescaux, N. Ayache, L. Soler.
  Video Synchronization: An Approach to Biopsy Site Re-localization, December 2014, 1. Introduction2. Related work3. System setup4. Evaluation.
  https://hal.inria.fr/hal-01089196

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