Bibliography

Major publications by the team in recent years

• 1C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.
  DRUM: A New Framework for Metabolic Modeling under Non-Balanced Growth. Application to the Carbon Metabolism of Unicellular Microalgae, in: PLoS ONE, August 2014, vol. 9, n^o 8, e104499. [ DOI : 10.1371/journal.pone.0104499 ]
  https://hal.inria.fr/hal-01097327
• 2O. Bernard.
  Hurdles and challenges for modelling and control of microalgae for CO2 mitigation and biofuel production, in: Journal of Process Control, 2011, vol. 21, n^o 10, pp. 1378–1389. [ DOI : 10.1016/j.jprocont.2011.07.012 ]
  http://hal.inria.fr/hal-00848385
• 3V. Calcagno, F. Grognard, F. M. Hamelin, E. Wajnberg, L. Mailleret.
  The functional response predicts the effect of resource distribution on the optimal movement rate of consumers, in: Ecology Letters, December 2014, vol. 17, n^o 12, pp. 1570-1579. [ DOI : 10.1111/ele.12379 ]
  https://hal.inria.fr/hal-01084299
• 4M. Chaves, E. Farcot, J.-L. Gouzé.
  Probabilistic approach for predicting periodic orbits in piecewise affine differential models, in: Bulletin of Mathematical Biology, 2013, vol. 75, n^o 6, pp. 967-987. [ DOI : 10.1007/s11538-012-9773-6 ]
  http://hal.inria.fr/hal-00828847
• 5F. Fabre, E. Rousseau, L. Mailleret, B. Moury.
  Durable strategies to deploy plant resistance in agricultural landscapes, in: New Phytologist, 2012, vol. 196, pp. 1064-1075.
  http://dx.doi.org/10.1111/j.1469-8137.2011.04019.x
• 6L. Mailleret, F. Grognard.
  Global stability and optimisation of a general impulsive biological control model, in: Mathematical Biosciences, 2009, vol. 221, n^o 2, pp. 91-100.
  http://dx.doi.org/10.1016/j.mbs.2009.07.002
• 7F. Mairet, O. Bernard, P. Masci, T. Lacour, A. Sciandra.
  Modelling neutral lipid production by the microalga Isochrysis affinis galbana under nitrogen limitation, in: Biores. Technol., 2011, vol. 102, pp. 142-149.
  http://dx.doi.org/10.1016/j.biortech.2010.06.138
• 8F. Mazenc, O. Bernard.
  Interval observers for linear time-invariant systems with disturbances, in: Automatica, January 2011, vol. 47, n^o 1, pp. 140-147. [ DOI : 10.1016/j.automatica.2010.10.019 ]
  http://hal.inria.fr/hal-00555464
• 9M. Moisan, O. Bernard, J.-L. Gouzé.
  Near optimal interval observers bundle for uncertain bioreactors, in: Automatica, January 2009, vol. 45, n^o 1, pp. 291–295. [ DOI : 10.1016/j.automatica.2008.07.006 ]
  https://hal.archives-ouvertes.fr/hal-01109396
• 10L. Tournier, M. Chaves.
  Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics, in: Automatica, 2013, vol. 49, n^o 4, pp. 884-893. [ DOI : 10.1016/j.automatica.2013.01.015, ]
  http://hal.inria.fr/hal-00848450

Publications of the year

Doctoral Dissertations and Habilitation Theses

• 11C. Baroukh.
  Metabolic modeling under non-balanced growth. Application to microalgae for biofuels production, Université Montpellier 2, October 2014.
  https://hal.inria.fr/tel-01108542
• 12A. Carta.
  Modelling, analysis and control for systems biology : application to bacterial growth models, Universite de Nice Sophia-Antipolis (UNS), May 2014.
  https://hal.inria.fr/tel-01094091
• 13P. Hartmann.
  Effect of hydrodynamics on light utilization in large scale cultures of microalgae, Univeristé Nice Sophia Antipolis, May 2014.
  https://hal.inria.fr/tel-01108529

Articles in International Peer-Reviewed Journals

• 14W. Abou-Jaoudé, M. Chaves, J.-L. Gouzé.
  Links between topology of the transition graph and limit cycles in a two-dimensional piecewise affine biological model, in: Journal of Mathematical Biology, December 2014, vol. 69, n^o 6-7, pp. 1461-1495. [ DOI : 10.1007/s00285-013-0735-x ]
  https://hal.archives-ouvertes.fr/hal-00919872
• 15S.-D. Ayata, M. Lévy, O. Aumont, L. Resplandy, A. Tagliabue, A. Sciandra, O. Bernard, O. Bernard, L. Resplandy.
  Phytoplankton plasticity drives large variability in carbon fixation efficiency, in: Geophysical Research Letters, December 2014, 20 p. [ DOI : 10.1002/2014GL062249 ]
  https://hal.inria.fr/hal-01097304
• 16C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.
  DRUM: A New Framework for Metabolic Modeling under Non-Balanced Growth. Application to the Carbon Metabolism of Unicellular Microalgae, in: PLoS ONE, August 2014, vol. 9, n^o 8, e104499. [ DOI : 10.1371/journal.pone.0104499 ]
  https://hal.inria.fr/hal-01097327
• 17T. Bayen, F. Mairet.
  Optimization of the separation of two species in a chemostat, in: Automatica, April 2014, vol. 50, n^o 4, pp. 1243-1248. [ DOI : 10.1016/j.automatica.2014.02.024 ]
  https://hal.archives-ouvertes.fr/hal-00817147
• 18T. Bayen, F. Mairet, P. Martinon, M. Sebbah.
  Analysis of a periodic optimal control problem connected to microalgae anaerobic digestion, in: Optimal Control Applications and Methods, June 2014, 24 p. [ DOI : 10.1002/oca.2127 ]
  https://hal.archives-ouvertes.fr/hal-00860570
• 19T. Bayen, M. Mazade, F. Mairet.
  Analysis of an optimal control problem connected to bioprocesses involving a saturated singular arc, in: Discrete and Continuous Dynamical Systems - Series B, January 2015, vol. 20, n^o 1, pp. 39-58. [ DOI : 10.3934/dcdsb.2015.20.39 ]
  https://hal.archives-ouvertes.fr/hal-00879385
• 20P. Bernhard.
  Evolutionary Dynamics of the Handicap Principle: An Example, in: Dynamic Games and Applications, 2015, 14 p. [ DOI : 10.1007/s13235-014-0108-0 ]
  https://hal.inria.fr/hal-01090629
• 21P. Bernhard, F. M. Hamelin.
  Simple signaling games of sexual selection (Grafen’s revisited), in: Journal of Mathematical Biology, December 2014, vol. 69, n^o 6-7, pp. 1719-1742. [ DOI : 10.1007/s00285-013-0745-8 ]
  https://hal.inria.fr/hal-00933425
• 22Q. Béchet, I. Feurgard, B. Guieysse, F. Lopes.
  The colorimetric assay of viability for algae (CAVA): a fast and accurate technique, in: Journal of Applied Phycology, 2015, 39 p, forthcoming.
  https://hal.inria.fr/hal-01096355
• 23V. Calcagno, F. Grognard, F. M. Hamelin, E. Wajnberg, L. Mailleret.
  The functional response predicts the effect of resource distribution on the optimal movement rate of consumers, in: Ecology Letters, December 2014, vol. 17, n^o 12, pp. 1570-1579. [ DOI : 10.1111/ele.12379 ]
  https://hal.inria.fr/hal-01084299
• 24V. Calcagno, L. Mailleret, E. Wajnberg, F. Grognard.
  How optimal foragers should respond to habitat changes: a reanalysis of the Marginal Value Theorem, in: Journal of Mathematical Biology, November 2014, vol. 69, n^o 5, pp. 1237-1265. [ DOI : 10.1007/s00285-013-0734-y ]
  https://hal.inria.fr/hal-00871355
• 25M. Castel, L. Mailleret, D. Andrivon, V. Ravigné, F. M. Hamelin.
  Allee Effects and the Evolution of Polymorphism in Cyclic Parthenogens, in: The American Naturalist, March 2014, vol. 183, n^o 3, pp. E75-E88. [ DOI : 10.1086/674828 ]
  https://hal.inria.fr/hal-00854466
• 26M. Chaves, A. Carta.
  Attractor computation using interconnected Boolean networks: testing growth rate models in E. Coli, in: Theoretical Computer Science, 2014, 17 p. [ DOI : 10.1016/j.tcs.2014.06.021 ]
  https://hal.inria.fr/hal-01095196
• 27P. Collet, L. Lardon, A. Hélias, S. Bricout, I. Lombaert-Valot, B. Perrier, O. Lépine, J.-P. Steyer, O. Bernard.
  Biodiesel from microalgae – Life cycle assessment and recommendations for potential improvements, in: Renewable Energy, November 2014, vol. 71, pp. 525–533. [ DOI : 10.1016/j.renene.2014.06.009 ]
  https://hal.inria.fr/hal-01101130
• 28C. Combe, P. Hartmann, S. Rabouille, A. Talec, O. Bernard, A. Sciandra.
  Long-term adaptive response to high-frequency light signals in the unicellular photosynthetic eukaryote Dunaliella salina, in: Biotechnology and Bioengineering, January 2015, 20 p. [ DOI : 10.1002/bit.25526 ]
  https://hal.inria.fr/hal-01102019
• 29N. El Farouq, P. Bernhard.
  Proportional Transaction Costs in the Robust Control Approach to Option Pricing: The Uniqueness Theorem, in: Applied Mathematics and Optimization, 2015, 16 p. [ DOI : 10.1007/s00245-014-9276-y ]
  https://hal.inria.fr/hal-01090616
• 30N. Go, C. Bidot, C. Belloc, S. Touzeau.
  Integrative Model of the Immune Response to a Pulmonary Macrophage Infection: What Determines the Infection Duration?, in: PLoS ONE, September 2014, vol. 9, n^o 9, e107818. [ DOI : 10.1371/journal.pone.0107818 ]
  https://hal.inria.fr/hal-01099937
• 31G. M. Grimaud, S. Rabouille, A. Dron, A. Sciandra, O. Bernard.
  Modelling the dynamics of carbon–nitrogen metabolism in the unicellular diazotrophic cyanobacterium Crocosphaera watsonii WH8501, under variable light regimes, in: Ecological Modelling, November 2014, vol. 291, pp. 121–133. [ DOI : 10.1016/j.ecolmodel.2014.07.016 ]
  https://hal.inria.fr/hal-01101127
• 32F. Grognard, A. R. Akhmetzhanov, O. Bernard.
  Optimal strategies for biomass productivity maximization in a photobioreactor using natural light, in: Automatica, 2014, vol. 50, n^o 2, pp. 359-368. [ DOI : 10.1016/j.automatica.2013.11.014 ]
  https://hal.inria.fr/hal-00871341
• 33F. Grognard, P. Masci, E. Benoît, O. Bernard.
  Competition between phytoplankton and bacteria: exclusion and coexistence, in: Journal of Mathematical Biology, 2014, 48 p. [ DOI : 10.1007/s00285-014-0783-x ]
  https://hal.inria.fr/hal-00968182
• 34P. Hartmann, Q. Béchet, O. Bernard.
  The effect of Time Scales in Photosynthesis on microalgae Productivity, in: Bioprocess and Biosystems Engineering, 2014, vol. 37, n^o 1, pp. 17-25. [ DOI : 10.1007/s00449-013-1031-2 ]
  https://hal.inria.fr/hal-00852255
• 35A. Lebon, L. Mailleret, Y. Dumont, F. Grognard.
  Direct and apparent compensation in plant-herbivore interactions, in: Ecological Modelling, October 2014, vol. 290, pp. 192–203. [ DOI : 10.1016/j.ecolmodel.2014.02.020 ]
  https://hal.inria.fr/hal-00968183
• 36F. Mairet, M. Moisan, O. Bernard.
  Estimation of neutral lipid and carbohydrate quotas in microalgae using adaptive interval observers, in: Bioprocess and Biosystems Engineering, January 2014, vol. 37, n^o 1, pp. 51-61. [ DOI : 10.1007/s00449-013-0913-7 ]
  https://hal.inria.fr/hal-00854476
• 37F. Mairet, M. Moisan, O. Bernard.
  Interval observer with near optimal adaptation dynamics. Application to the estimation of lipid quota in microalgae, in: International Journal of Robust and Nonlinear Control, April 2014, vol. 24, n^o 6, pp. 1142-1157. [ DOI : 10.1002/rnc.2934 ]
  https://hal.inria.fr/hal-00848434
• 38F. Mazenc, O. Bernard.
  ISS Interval Observers for Nonlinear Systems Transformed Into Triangular Systems, in: International Journal of Robust and Nonlinear Control, May 2014, vol. 24, n^o 7, pp. 1241–1261. [ DOI : 10.1002/rnc.2937 ]
  https://hal.inria.fr/hal-01088143
• 39R. Muñoz-Tamayo, P. Martinon, G. Bougaran, F. Mairet, O. Bernard.
  Getting the most out of it: optimal experiments for parameter estimation of microalgae growth models, in: Journal of Process Control, May 2014, pp. 991-1001. [ DOI : 10.1016/j.jprocont.2014.04.021 ]
  https://hal.inria.fr/hal-00998525
• 40J. Papaïx, K. Adamczyk-Chauvat, A. Bouvier, K. Kiêu, S. Touzeau, C. Lannou, H. Monod.
  Pathogen population dynamics in agricultural landscapes: The Ddal modelling framework, in: Infection, Genetics and Evolution, October 2014, vol. 27, pp. 509-520. [ DOI : 10.1016/j.meegid.2014.01.022 ]
  https://hal.inria.fr/hal-01099950
• 41J. Papaïx, S. Touzeau, H. Monod, C. Lannou.
  Can epidemic control be achieved by altering landscape connectivity in agricultural systems?, in: Ecological Modelling, July 2014, vol. 284, pp. 35-47. [ DOI : 10.1016/j.ecolmodel.2014.04.014 ]
  https://hal.inria.fr/hal-01099953

Invited Conferences

• 42P. Bernhard.
  Modeling and control in physical, life, and social sciences: Some remarks, in: At the Boundaries of Dynamic Games, Control, and Viability, St Nicolas-la-Chapelle, France, June 2014, 29 p.
  https://hal.inria.fr/hal-01090633
• 43M. Chaves.
  Hybrid mathematical formalism for analysis of biological regulatory networks, in: IEEE International Meeting on Analysis and Applications of Nonsmooth Systems, COMO, Italy, September 2014.
  https://hal.inria.fr/hal-01096270
• 44M. Chaves.
  Predictive analysis for biological regulatory systems – combining discrete and continuous formalisms, in: Symposium on Mathematical Theory of Networks and Systems (MTNS'14), Groningen, Netherlands, July 2014, Semi-Plenary talk.
  https://hal.inria.fr/hal-01096263

International Conferences with Proceedings

• 45N. Bajeux, F. Grognard, L. Mailleret.
  Introduction strategies for biological control agents subject to Allee effects, in: 21st International Symposium on Mathematical Theory of Networks and Systems, Grogningen, Netherlands, July 2014.
  https://hal.inria.fr/hal-00968180
• 46T. Bayen, F. Mairet, M. Mazade.
  Minimal time problem for a fed-batch bioreactor with a non admissible singular arc, in: European Control Conference (ECC), Strasbourg, France, June 2014, pp. 165-170. [ DOI : 10.1109/ECC.2014.6862444 ]
  https://hal.inria.fr/hal-01095694
• 47I. Belgacem, J.-L. Gouzé.
  Mathematical study of the global dynamics of a concave gene expression model, in: 22nd Mediterranean Conference of Control and Automation (MED), Palermo, Italy, June 2014. [ DOI : 10.1109/MED.2014.6961562 ]
  https://hal.inria.fr/hal-01091655
• 48I. Belgacem, E. Grac, D. Ropers, J.-L. Gouzé.
  A coupled transcription-translation mathematical model of RNA polymerase, in: 21st International Symposium on Mathematical Theory of Networks and Systems, Groningen, Netherlands, July 2014.
  https://hal.inria.fr/hal-00966559
• 49I. Belgacem, E. Grac, D. Ropers, J.-L. Gouzé.
  Stability analysis of a reduced transcription-translation model of RNA polymerase, in: Proceedings of the 53rd IEEE Conference on Decision and Control, Los Angeles, CA, United States, December 2014.
  https://hal.inria.fr/hal-01091674
• 50M. Chaves, M. Preto.
  Hybrid models for the interconnection of circadian and genetic cycles in cyanobacteria, in: 21st International Symposium on Mathematical Theory of Networks and Systems, Groningen, Netherlands, July 2014, 4 p.
  https://hal.inria.fr/hal-01095211
• 51F. Chazalon, S. Rabouille, P. Hartmann, A. Sciandra, O. Bernard.
  A Dynamical Model to study the Response of Microalgae to Pulse Amplitude Modulated Fluorometry , in: 19th IFAC World Congress, Cape Town, South Africa, August 2014, pp. 7152-7157. [ DOI : 10.3182/20140824-6-ZA-1003.02162 ]
  https://hal.inria.fr/hal-01101296
• 52N. Giordano, F. Mairet, J.-L. Gouzé, J. Geiselmann, H. De Jong.
  Dynamic optimisation of resource allocation in microorganisms, in: 21st International Symposium on Mathematical Theory of Networks and Systems (MTNS 2014), Groningen, Netherlands, July 2014.
  https://hal.inria.fr/hal-01079299
• 53G. M. Grimaud, F. Mairet, O. Bernard.
  Modelling thermal adaptation in microalgae : an adaptive dynamics point of view, in: 19th IFAC World Congress, Cape Town, South Africa, August 2014, pp. 4376-4381. [ DOI : 10.3182/20140824-6-ZA-1003.00982 ]
  https://hal.inria.fr/hal-01094700
• 54F. Grognard.
  Feedback stabilization of predator-prey systems for impulsive biological control, in: 19th IFAC World Congress, Cape Town, South Africa, August 2014. [ DOI : 10.3182/20140824-6-ZA-1003.00666 ]
  https://hal.inria.fr/hal-00968181
• 55P. Hartmann, D. Demory, C. Combe, R. Hamouda, J. Sainte-Marie, M.-O. Bristeau, A.-C. Boulanger, B. Sialve, J.-P. Steyer, S. Rabouille, A. Sciandra, O. Bernard.
  Growth Rate Estimation of Algae in Raceway Ponds: A Novel Approach, in: 19th IFAC World Congress, Cape Town, South Africa, August 2014. [ DOI : 10.3182/20140824-6-ZA-1003.02408 ]
  https://hal.inria.fr/hal-01097313
• 56F. Mairet, O. Bernard.
  Robustness of Closed-Loop Control to Biodiversity: a Didactic Example, in: 19th IFAC World Congress, Cape Town, South Africa, August 2014, pp. 5321-5326. [ DOI : 10.3182/20140824-6-ZA-1003.02193 ]
  https://hal.inria.fr/hal-01094693

Conferences without Proceedings

• 57N. Bajeux, F. Grognard, L. Mailleret.
  Les stratégies d'introduction d'agents de lutte biologique soumis aux effets Allee, in: 34ème Séminaire de la Société Francophone de Biologie Théorique, Saint Flour, France, Société Francophone de Biologie Théorique, May 2014.
  https://hal.inria.fr/hal-01102298
• 58A. Bisson, F. Fabre, L. Mailleret, M. L. Desprez Loustau, F. M. Hamelin.
  From theory to data : temporal niche differentiation of closely related pathogens species sharing the same plant host, in: Les maladies infectieuses comme moteur de l’évolution : les défis à venir, Roscoff, France, September 2014.
  https://hal.inria.fr/hal-01092622
• 59M. Castel, L. Mailleret, D. Andrivon, V. Ravigné.
  Allee effects and the evolution of polymorphism in cyclical parthenogens, in: NIMBioS workshop on vectored plant viruses, Knoxville, United States, 2014.
  https://hal.inria.fr/hal-01101288
• 60B. Ghosh, F. Grognard, L. Mailleret.
  Optimal natural enemies deployment in patchy environments for augmentative biological control, in: 9th European Conference on Mathematical and Theoretical Biology, Goteborg, Sweden, June 2014.
  https://hal.inria.fr/hal-01087508
• 61N. Go, C. Bidot, C. Belloc, S. Touzeau.
  Modelling the infection and immune dynamics induced by a pathogen targeting pulmonary macrophages : influence of strain virulence and host exposure, in: 9th European Conference on Mathematical and Theoretical Biology, Göteborg, Sweden, June 2014.
  https://hal.inria.fr/hal-01099968
• 62L. Mailleret, V. Lemesle, F. M. Hamelin, V. Calcagno, F. Grognard.
  Modelling populations subjected to pulsed taking regimes, in: 9th European Conference on Mathematical and Theoretical Biology, Goteborg, Sweden, June 2014.
  https://hal.inria.fr/hal-01087514
• 63T. Morel Journel, P. Girod, L. Mailleret, E. Vercken.
  Trichogrammas surf on pushed waves: effect of propagule pressure and connectivity of the introduction site on the invasion of an experimental discrete landscape, in: Entomophagistes, Louvain-la-Neuve, Belgium, 2014.
  https://hal.inria.fr/hal-01101298
• 64T. Morel Journel, M. Hautier, E. Vercken, L. Mailleret.
  Clustered or scattered? The impact of habitat distribution on establishment dynamics, in: British Ecological Society - Société Française d'Ecologie Joint Annual Meeting, Lille, France, December 2014.
  https://hal.inria.fr/hal-01092249
• 65T. Morel Journel, M. Hautier, E. Vercken, L. Mailleret.
  Clustered or scattered? The impact of habitat distribution on establishment dynamics, in: Conférence du GDR InvaBio, Rennes, France, October 2014.
  https://hal.inria.fr/hal-01092264
• 66C. Poncet, P. Parolin, H. Fatnassi, L. Mailleret, A. Bout, J. Pizzol, R. Boll, B. Cécile.
  Technological and Ecological Approaches to Design and Manage Sustainable Greenhouse Production Systems, in: 29th International Horticultural Congress, Brisbane, Australia, 2014.
  https://hal.inria.fr/hal-01101302
• 67E. Rousseau, J. Coville, A. Palloix, F. Fabre, L. Mailleret, B. Moury, F. Grognard.
  Protection of the durability of major resistance genes to plant viruses with quantitative resistance, a modeling approach, in: 9th European Conference on Mathematical and Theoretical Biology, Goteborg, Sweden, June 2014.
  https://hal.inria.fr/hal-01087465
• 68E. Rousseau, F. Fabre, L. Mailleret, A. Palloix, V. Simon, S. Valière, B. Moury, F. Grognard.
  Protecting the durability of major resistance genes to plant viruses with quantitative resistance, in: Conférence Jacques Monod, Roscoff, France, April 2014.
  https://hal.inria.fr/hal-01095703
• 69L. Van Oudenhove, L. Mailleret, X. Fauvergue.
  Caractérisation des réponses des parasitoïdes aux défenses induites des plantes, in: Entomophagistes, Louvain-la-Neuve, Belgium, 2014.
  https://hal.inria.fr/hal-01101292
• 70L. Van Oudenhove, L. Mailleret, X. Fauvergue.
  Parasitoid response to herbivore induced plant volatiles: a meta-analysis, in: British Ecological Society - Société Française d'Ecologie Joint Annual Meeting, Lille, France, December 2014.
  https://hal.inria.fr/hal-01092237

Scientific Books (or Scientific Book chapters)

• 71F. Mairet, J.-L. Gouzé.
  Control of a Bioreactor with Quantized Measurements, in: Formal Methods in Macro-Biology, F. Fages, C. Piazza (editors), Lecture Notes in Computer Science, Springer International Publishing, 2014, vol. 8738, pp. 47-62. [ DOI : 10.1007/978-3-319-10398-3_5 ]
  https://hal.inria.fr/hal-01092328
• 72L. Maruthi, I. Tkachev, A. Carta, E. Cinquemani, P. Hersen, G. Batt, A. Abate.
  Towards Real-Time Control of Gene Expression at the Single Cell Level: A Stochastic Control Approach, in: Computational Methods in Systems Biology, Lecture Notes in Computer Science, Springer International Publishing, 2014, vol. 8859, pp. 155-172. [ DOI : 10.1007/978-3-319-12982-2_12 ]
  https://hal.inria.fr/hal-01096959

Internal Reports

• 73G. Kerlero de Rosbo, O. Bernard.
  Évaluation du gisement potentiel de ressources algales pour l’énergie et la chimie en France à horizon 2030, ADEME, November 2014, 164 p.
  https://hal.inria.fr/hal-01102032

Scientific Popularization

• 74O. Bernard.
  La production de micro-algues sous serre photovoltaique : évolution ou révolution ?, in: Revue de l'Energie, November 2014, vol. 621, pp. 385-392.
  https://hal.inria.fr/hal-01101142

Other Publications

• 75V. Le Guennec.
  Modélisation de l’effet de la température sur la croissance du phytoplancton à l’échelle de l’océan mondial, UPMC, Paris Sorbonne, June 2014.
  https://hal.inria.fr/hal-01109504
• 76T. Perrot.
  Evolution de la virulence chez un nématode phytoparasite: modélisation et optimisation du déploiement des plantes résistantes, Université de Montpellier 2, June 2014.
  https://hal.inria.fr/hal-01096844

References in notes

• 77S.-D. Ayata, M. Lévy, O. Aumont, A. Sciandra, J. Sainte-Marie, A. Tagliabue, O. Bernard.
  Phytoplankton growth formulation in marine ecosystem models: should we take into account photo-acclimation and variable stoichiometry in oligotrophic areas?, in: Journal of Marine Systems, September 2013, vol. 125, pp. 29-40. [ DOI : 10.1016/j.jmarsys.2012.12.010 ]
  http://hal.inria.fr/hal-00820981
• 78C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.
  A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgae, in: Computer Applied to Biotechnology, Mumbai, India, December 2013.
  http://hal.inria.fr/hal-00856042
• 79T. Bayen, F. Mairet, M. Mazade.
  Optimal feeding strategy for the minimal time problem of a fed-batch bioreactor with mortality rate, Inria Sophia Antipolis, 2012.
  https://hal.archives-ouvertes.fr/hal-00759058
• 80O. Bernard.
  TELEMAC Deliverable 3.4: Final version of the Telemac advanced control module, 2004.
• 81O. Bernard.
  Hurdles and challenges for modelling and control of microalgae for CO2 mitigation and biofuel production, in: Journal of Process Control, 2011, vol. 21, n^o 10, pp. 1378–1389.
  http://dx.doi.org/10.1016/j.jprocont.2011.07.012
• 82O. Bernard, B. Rémond.
  Validation of a simple model accounting for light and temperature effect on microalgal growth, in: Bioresource Technology, 2012, vol. 123, pp. 520-527. [ DOI : 10.1016/j.biortech.2012.07.022 ]
  http://hal.inria.fr/hal-00848389
• 83O. Bernard, J. Sainte-Marie, B. Sialve, J.-P. Steyer.
  Hydrodynamics-Biology Coupling for Algae Culture and Biofuel Production, in: ERCIM News, 2013, vol. 92, 47 p.
  http://hal.inria.fr/hal-00850370
• 84C. Breindl, M. Chaves, F. Allgöwer.
  A linear reformulation of Boolean optimization problems and its application to the problem of estimating the structure of gene regulation networks, in: 52nd IEEE Conference on Decision and Control (CDC'13), Florence, Italy, 2013.
  http://hal.inria.fr/hal-00850371
• 85A. Carta, M. Chaves, J.-L. Gouzé.
  A class of Switched Piecewise Quadratic Systems for coupling gene expression with growth rate in bacteria, in: 9th IFAC Symposium Nonlinear Control Systems (NOLCOS'13), Toulouse, France, S. Tarbouriech, M. Krstic (editors), IFAC, 2013, vol. 9 Part 1, pp. 271-276. [ DOI : 10.3182/20130904-3-FR-2041.00140 ]
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• 86M. Chaves, M. Preto.
  Hierarchy of models: From qualitative to quantitative analysis of circadian rhythms in cyanobacteria, in: Chaos: An Interdisciplinary Journal of Nonlinear Science, 2013, vol. 23, n^o 2, 025113. [ DOI : 10.1063/1.4810922 ]
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• 87P. Collet, D. Spinelli, L. Lardon, A. Hélias, J.-P. Steyer, O. Bernard.
  Life-Cycle Assessment of Microalgal-Based Biofuels, in: Biofuels from algae, A. Pandey, D.-J. Lee, Y. Chisti, C. R. Soccol (editors), Elsevier, September 2013, pp. 287-312.
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• 88J.-F. Cornet, O. Bernard.
  Modélisation et Ingénierie de la Photosynthèse, in: L'énergie à découvert, R. Mosseri, C. Jeandel (editors), CNRS Eds, 2013, pp. 160-161.
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• 89D. Demory.
  Étude théorique et expérimentale de l'effet de l'hydrodynamique sur la photosynthèse du phytoplancton par un dispositif novateur à base de LED, Université Pierre and Marie Curie, Paris VI, 2013.
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• 90N. Go.
  Modelling the immune response to the Porcine Respiratory and Reproductive Syndrome virus, AgroParisTech, December 2014.
  https://hal.inria.fr/tel-01100983
• 91J.-L. Gouzé, A. Rapaport, Z. Hadj-Sadok.
  Interval observers for uncertain biological systems, in: Ecological modelling, 2000, vol. 133, pp. 45-56.
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• 92G. M. Grimaud, A. Dron, S. Rabouille, A. Sciandra, O. Bernard.
  Modelling light-dark regime influence on the carbon-nitrogen metabolism in a unicellular diazotrophic cyanobacterium, in: CAB, Mumbai, India, December 2013.
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• 93C. Gudin, O. Bernard.
  Le rêve porté par les microalgues, in: La culture de l'invisible - le rêve porté par les microalgues, C. Gudin (editor), Ovadia, 2013, 109 p.
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• 94F. M. Hamelin, M. Castel, S. Poggi, D. Andrivon, L. Mailleret.
  Seasonality and the evolutionary divergence of plant parasites, in: Ecology, 2011, vol. 92, pp. 2159-2166.
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• 95P. Hartmann, Q. Béchet, O. Bernard.
  Interaction between Time Scales in Microalgae Based Processes, in: 20th Mediterranean Conference on Control & Automation (MED), Barcelona, Espagne, IEEE, 2012, pp. 561–566. [ DOI : 10.1109/MED.2012.6265697 ]
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• 96P. Hartmann, A. Nikolaou, B. Chachuat, O. Bernard.
  A dynamic Model coupling Photoacclimation and Photoinhibition in Microalgae, in: European Control Conference (ECC13), Zurich, Switzerland, 2013.
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• 97L. Lardon, A. Hélias, B. Sialve, J.-P. Steyer, O. Bernard.
  Life-Cycle Assessment of Biodiesel Production from Microalgae, in: Environ. Sci. Technol., 2009, vol. 43, pp. 6475-6481.
• 98M. Le Chevanton, M. Garnier, G. Bougaran, N. Schreiber, E. Lukomska, J.-B. Bérard, E. Fouilland, O. Bernard, J.-P. Cadoret.
  Screening and selection of growth-promoting bacteria for it Dunaliella cultures, in: Algal Research, 2013, vol. 2, pp. 212–222. [ DOI : 10.1016/j.algal.2013.05.003 ]
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• 99L. Mailleret, V. Lemesle.
  A note on semi-discrete modelling in the life sciences, in: Philosophical Transactions of the Royal Society A: Mathematical,Physical and Engineering Sciences, 2009, vol. 367, n^o 1908, pp. 4779-4799. [ DOI : 10.1098/rsta.2009.0153 ]
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• 100F. Mairet, O. Bernard, E. Cameron, M. Ras, L. Lardon, J.-P. Steyer, B. Chachuat.
  Three-reaction model for the anaerobic digestion of microalgae, in: Biotech. Bioeng., 2012, vol. 109, n^o 2, pp. 415-425.
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• 101F. Mairet, O. Bernard, T. Lacour, A. Sciandra.
  Modelling microalgae growth in nitrogen limited photobiorector for estimating biomass, carbohydrate and neutral lipid productivities, in: IFAC World Congress, Milano, Italy, 2011.
• 102F. Mairet, O. Bernard, M. Ras, L. Lardon, J.-P. Steyer.
  Modeling anaerobic digestion of microalgae using ADM1, in: Bioresource Technology, 2011, vol. 102, n^o 13, pp. 6823–6829.
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• 103F. Mairet, R. Muñoz-Tamayo, O. Bernard.
  Adaptive control for optimizing microalgae production, in: Computer Application in Biotechnology (CAB2013), Mumbai, India, December 2013.
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• 104F. Mairet, R. Muñoz-Tamayo, O. Bernard.
  Driving Species Competition in a Light-limited Chemostat, in: 9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Toulouse, France, 2013.
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• 105P. Masci, O. Bernard, F. Grognard.
  Continuous Selection of the Fastest Growing Species in the Chemostat, in: Proceedings of the IFAC conference, Seoul, Korea, 2008.
• 106C. Mocquet, O. Bernard, A. Sciandra.
  Cell cycle modelling for microalgae grown under light/dark cycles, in: 11th IFAC Symposium on Computer Applications in Biotechnology - CAB, Leuven, Belgium, IFAC, 2010, vol. 11, pp. 174-179. [ DOI : 10.3182/20100707-3-BE-2012.0072 ]
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• 107J. Moreno.
  Optimal time control of bioreactors for the wastewater treatment, in: Optimal Control Applications and Methods, 1999, vol. 20, n^o 3, pp. 145–164.
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• 108R. Muñoz-Tamayo, F. Mairet, O. Bernard.
  Driving microalgal production in raceway systems to near optimal productivities, in: European Control Conference (ECC13), Zurich, Switzerland, 2013.
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• 109R. Muñoz-Tamayo, F. Mairet, O. Bernard.
  Optimizing microalgal production in raceway systems, in: Biotechnology Progress, 2013, vol. 29, n^o 2, pp. 543–552. [ DOI : 10.1002/btpr.1699 ]
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• 110S. Nundloll.
  Dos and don'ts in augmentative biological control: insights from mathematical modelling, Université de Nice-Sophia Antipolis, 2010.
• 111M. Ras, J.-P. Steyer, O. Bernard.
  Temperature effect on microalgae: a crucial factor for outdoor production, in: Reviews in Environmental Science and Bio/Technology, 2013, vol. 12, n^o 2, pp. 153-164. [ DOI : 10.1007/s11157-013-9310-6 ]
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• 112B. Sialve, N. Bernet, O. Bernard.
  Anaerobic digestion of microalgae as a necessary step to make microalgal biodiesel sustainable, in: Biotechnol. Advances, 2009, vol. 27, pp. 409-416.
• 113B. Sialve, J.-P. Steyer, E. Latrille, O. Bernard, G. Bougaran, R. Kaas, J.-P. Cadoret.
  Procédé de fixation de CO2 et de traitement des déchets organiques par couplage d'un système de digestion anaérobie et d'un système de production de microorganismes phytoplanctoniques, 2009, n^o 09/50334.
• 114A. Talec, M. Philistin, F. Ferey, G. Walenta, J.-O. Irisson, O. Bernard, A. Sciandra.
  Effect of gaseous cement industry effluents on four species of microalgae, in: Bioresource Technology, 2013, vol. 143, pp. 353 - 359. [ DOI : 10.1016/j.biortech.2013.05.104 ]
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• 115Task Group for Mathematical Modelling of Anaerobic Digestion Processes I. W. A.
  Anaerobic Digestion Model No. 1 (ADM1), IWA Publishing, London, 2002.