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Section: Research Program
Identification and control
Models identification and state estimation
Growth kinetics is usually one of the crucial ingredients in the modeling of microbial growth. Although the specific growth rate functions and their parameters can be identified in pure cultures (and can be estimated with accuracy in laboratory experiments), it is often an issue to extrapolate this knowledge in industrial setup or in mixed cultures. The parameters of these functions could change with their chemical and physical environment, and species interactions could inhibit or promote a strain that is expected to dominate or to be dominated in an multi-species ecosystem. Moreover, we need to estimate the state variables of the models.
We aim at developing effective tools for the on-line reconstruction of growth curves (and of their parameters) and/or state variables, along with the characteristics of microbial ecosystems:
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It is not always possible to drive a biological system for exploring a large subset of the state space, and open-loop dynamics could be unstable when far from locally stable equilibria (for instance under inhibition growth).
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The number of functional groups of species and the nature of their interactions (competition, mutualism, neutral) are not always known a priori and need to be estimated.
We look for observers or filters based methods (or alternatives), as well as estimation procedures, with the typical difficulty that for biological systems and their outputs it is rarely straightforward to write the models into a canonical observation form. However, our objective is to obtain an adjustable or guaranteed speed of convergence of the estimators.
Optimal design and control
For practitioners, an expected outcome of the models is to bring improvements in the design and real-time operation of the processes. This naturally leads to mathematical formulations of optimization, stabilizing control or optimal control problems. We distinguish two families of problems:
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Process design and control within an industrial setup. Typically one aims at obtaining small residence times for given input-output performances and (globally) stable processes. The design questions consist in studying on the models if particular interconnections and fill strategies allow to obtain significant gains. The specificity of the models and the inputs constraints can lead to systems that are not locally controllable, and thus the classical linearizing techniques do not work. This leaves open some problems for the determination of globally stabilizing feedback or optimal syntheses.
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Design and control for resource preservation in natural environments (such as lakes, soil bio-remediation...). Here, the spatial heterogeneity of the resource might be complex and/or not well known. We look for sparse spatial representations in order to apply finite dimensional tools of state-space systems.
In both cases, one faces model uncertainty and partial measurements that often require to couple the techniques developed in Section 3.2.1 .