Bibliography

Major publications by the team in recent years

• 1C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.
  DRUM: A New Framework for Metabolic Modeling under Non-Balanced Growth. Application to the Carbon Metabolism of Unicellular Microalgae, in: PLoS ONE, August 2014, vol. 9, n^o 8, e104499. [ DOI : 10.1371/journal.pone.0104499 ]
  https://hal.inria.fr/hal-01097327
• 2O. Bernard.
  Hurdles and challenges for modelling and control of microalgae for CO2 mitigation and biofuel production, in: Journal of Process Control, 2011, vol. 21, n^o 10, pp. 1378–1389. [ DOI : 10.1016/j.jprocont.2011.07.012 ]
  http://hal.inria.fr/hal-00848385
• 3V. Calcagno, F. Grognard, F. M. Hamelin, E. Wajnberg, L. Mailleret.
  The functional response predicts the effect of resource distribution on the optimal movement rate of consumers, in: Ecology Letters, December 2014, vol. 17, n^o 12, pp. 1570-1579. [ DOI : 10.1111/ele.12379 ]
  https://hal.inria.fr/hal-01084299
• 4M. Chaves, E. Farcot, J.-L. Gouzé.
  Probabilistic approach for predicting periodic orbits in piecewise affine differential models, in: Bulletin of Mathematical Biology, 2013, vol. 75, n^o 6, pp. 967-987. [ DOI : 10.1007/s11538-012-9773-6 ]
  http://hal.inria.fr/hal-00828847
• 5F. Fabre, E. Rousseau, L. Mailleret, B. Moury.
  Durable strategies to deploy plant resistance in agricultural landscapes, in: New Phytologist, 2012, vol. 196, pp. 1064-1075.
  http://dx.doi.org/10.1111/j.1469-8137.2011.04019.x
• 6L. Mailleret, F. Grognard.
  Global stability and optimisation of a general impulsive biological control model, in: Mathematical Biosciences, 2009, vol. 221, n^o 2, pp. 91-100.
  http://dx.doi.org/10.1016/j.mbs.2009.07.002
• 7F. Mairet, O. Bernard, P. Masci, T. Lacour, A. Sciandra.
  Modelling neutral lipid production by the microalga Isochrysis affinis galbana under nitrogen limitation, in: Biores. Technol., 2011, vol. 102, pp. 142-149.
  http://dx.doi.org/10.1016/j.biortech.2010.06.138
• 8F. Mazenc, O. Bernard.
  Interval observers for linear time-invariant systems with disturbances, in: Automatica, January 2011, vol. 47, n^o 1, pp. 140-147. [ DOI : 10.1016/j.automatica.2010.10.019 ]
  http://hal.inria.fr/hal-00555464
• 9M. Moisan, O. Bernard, J.-L. Gouzé.
  Near optimal interval observers bundle for uncertain bioreactors, in: Automatica, January 2009, vol. 45, n^o 1, pp. 291–295. [ DOI : 10.1016/j.automatica.2008.07.006 ]
  https://hal.archives-ouvertes.fr/hal-01109396
• 10L. Tournier, M. Chaves.
  Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics, in: Automatica, 2013, vol. 49, n^o 4, pp. 884-893. [ DOI : 10.1016/j.automatica.2013.01.015, ]
  http://hal.inria.fr/hal-00848450

Publications of the year

Doctoral Dissertations and Habilitation Theses

• 11I. Belgacem.
  Modelling, analysis and control of biological networks, Université Nice Sophia-Antipolis, March 2015.
  https://hal.inria.fr/tel-01243874
• 12H. Bonnefond.
  Continuous improvement of microalgae for bioenergy production by selection pressure, Université Pierre et Marie Curie, December 2015.
• 13T. Morel Journel.
  Introduction strategies for organisms in spatially structures envrionments, Université Nice Sophia Antipolis, December 2015.
  https://hal.inria.fr/tel-01241402

Articles in International Peer-Reviewed Journals

• 14C. Baroukh, R. Muñoz-Tamayo, O. Bernard, J.-P. Steyer.
  Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production, in: Current Opinion in Biotechnology, 2015, vol. 33, pp. 198-205. [ DOI : 10.1016/j.copbio.2015.03.002 ]
  https://hal.archives-ouvertes.fr/hal-01163456
• 15C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.
  A state of the art of metabolic networks of unicellular microalgae and cyanobacteria for biofuel production, in: Metabolic Engineering, 2015, vol. 30, pp. 49-60. [ DOI : 10.1016/j.ymben.2015.03.019 ]
  https://hal.archives-ouvertes.fr/hal-01163453
• 16T. Bayen, F. Mairet, P. Martinon, M. Sebbah.
  Analysis of a periodic optimal control problem connected to microalgae anaerobic digestion, in: Optimal Control Applications and Methods, November 2015, 24 p. [ DOI : 10.1002/oca.2127 ]
  https://hal.archives-ouvertes.fr/hal-00860570
• 17T. Bayen, M. Mazade, F. Mairet.
  Analysis of an optimal control problem connected to bioprocesses involving a saturated singular arc, in: Discrete and Continuous Dynamical Systems - Series B, January 2015, vol. 20, n^o 1, pp. 39-58. [ DOI : 10.3934/dcdsb.2015.20.39 ]
  https://hal.archives-ouvertes.fr/hal-00879385
• 18P. Bernhard.
  Evolutionary Dynamics of the Handicap Principle: An Example, in: Dynamic Games and Applications, 2015, vol. 5, n^o 2, pp. 214-227. [ DOI : 10.1007/s13235-014-0108-0 ]
  https://hal.inria.fr/hal-01090629
• 19Q. Béchet, P. Chambonnière, A. Shilton, G. Guizard, B. Guieysse.
  Algal productivity modeling: A step toward accurate assessments of full-scale algal cultivation, in: Biotechnology and Bioengineering, May 2015, vol. 112, n^o 5, pp. 987-996. [ DOI : 10.1002/bit.25517 ]
  https://hal.inria.fr/hal-01253774
• 20Q. Béchet, I. Feurgard, B. Guieysse, F. Lopes.
  The colorimetric assay of viability for algae (CAVA): a fast and accurate technique, in: Journal of Applied Phycology, 2015, vol. 27, n^o 6, pp. 2289-2297.
  https://hal.inria.fr/hal-01096355
• 21A. Carta, M. Chaves, J.-L. Gouzé.
  Continuous-switch piecewise quadratic models of biological networks: Application to bacterial growth, in: Automatica, 2015. [ DOI : 10.1016/j.automatica.2015.07.031 ]
  https://hal.archives-ouvertes.fr/hal-01231368
• 22P. Collet, A. Hélias, L. Lardon, J.-P. Steyer, O. Bernard.
  Recommendations for Life Cycle Assessment of algal fuels, in: Applied Energy, September 2015, vol. 154, pp. 1089–1102. [ DOI : 10.1016/j.apenergy.2015.03.056 ]
  https://hal.inria.fr/hal-01247073
• 23C. Combe, P. Hartmann, S. Rabouille, A. Talec, O. Bernard, A. Sciandra.
  Long-term adaptive response to high-frequency light signals in the unicellular photosynthetic eukaryote Dunaliella salina, in: Biotechnology and Bioengineering, January 2015, vol. 112, n^o 6, pp. 1111–1121. [ DOI : 10.1002/bit.25526 ]
  https://hal.inria.fr/hal-01102019
• 24N. El Farouq, P. Bernhard.
  Proportional Transaction Costs in the Robust Control Approach to Option Pricing: The Uniqueness Theorem, in: Applied Mathematics and Optimization, 2015, vol. 72, n^o 2, pp. 187-202. [ DOI : 10.1007/s00245-014-9276-y ]
  https://hal.inria.fr/hal-01090616
• 25F. Fabre, E. Rousseau, L. Mailleret, B. Moury.
  Epidemiological and evolutionary management of plant resistance: optimizing the deployment of cultivar mixtures in time and space in agricultural landscapes, in: Evolutionary Applications, December 2015, vol. 8, n^o 10, pp. 919–932. [ DOI : 10.1111/eva.12304 ]
  https://hal.inria.fr/hal-01239676
• 26B. Facon, L. Mailleret, D. Renault, L. Roques.
  Processus d’invasions biologiques : de l’approche descriptive à l’approche prédictive, in: Revue d'Ecologie, Terre et Vie, 2015, vol. 70, n^o 12, pp. 110-113.
  https://hal.inria.fr/hal-01239839
• 27B. Ghosh, F. Grognard, L. Mailleret.
  Natural enemies deployment in patchy environments for augmentative biological control, in: Applied Mathematics and Computation, 2015, vol. 266, n^o 1, pp. 982-999. [ DOI : 10.1016/j.amc.2015.06.021 ]
  https://hal.archives-ouvertes.fr/hal-01171118
• 28F. Grognard, P. Masci, E. Benoît, O. Bernard.
  Competition between phytoplankton and bacteria: exclusion and coexistence, in: Journal of Mathematical Biology, 2015, vol. 70, n^o 5, pp. 959-1006. [ DOI : 10.1007/s00285-014-0783-x ]
  https://hal.inria.fr/hal-00968182
• 29J. Jimenez, E. Latrille, J. Harmand, D. Gaida, C. Wolf, F. Mairet, O. Bernard, V. Alcaraz-Gonzalez, H. Mendez-Acosta, D. Zitomer, D. Totzke, H. Spanjers, F. Jacobi, A. Guwy, R. Dinsdale, S. Mazhegrane, G. Ruiz-Filippi, A. Seco, T. Ribeiro, A. Pauss, J.-P. Steyer.
  Instrumentation and control of anaerobic digestion processes: a review and some research challenges, in: Reviews in Environmental Science and Biotechnology, October 2015, vol. 14, pp. 615-648. [ DOI : 10.​1007/​s11157-015-9382-6 ]
  https://hal.inria.fr/hal-01256735
• 30F. Mairet, J.-L. Gouzé.
  Hybrid Control of a Bioreactor with Quantized Measurements, in: IEEE Transactions on Automatic Control, 2015, vol. pp, n^o 99. [ DOI : 10.1109/TAC.2015.2471735 ]
  https://hal.inria.fr/hal-01239387
• 31F. Mairet, R. Muñoz-Tamayo, O. Bernard.
  Adaptive control of light attenuation for optimizing microalgae production, in: Journal of Process Control, 2015, vol. 30, pp. 117-124. [ DOI : 10.1016/j.jprocont.2015.03.010 ]
  https://hal.archives-ouvertes.fr/hal-01163455
• 32T. Morel Journel, X. Fauvergue, E. Lombaert, L. Mailleret, T. Malausa, N. Ris, E. Vercken.
  De l’utilisation de microcosmes pour le test d’hypothèses en biologie de l’invasion, in: Revue d'Ecologie, Terre et Vie, 2015, vol. 70, n^o 12, pp. 16-27.
  https://hal.inria.fr/hal-01239846
• 33T. Morel-Journel, P. Girod, L. Mailleret, A. Auguste, A. Blin, E. Vercken.
  The highs and lows of dispersal: how connectivity and initial population size jointly shape establishment dynamics in discrete landscapes, in: Oikos, October 2015. [ DOI : 10.1111/oik.02718 ]
  https://hal.inria.fr/hal-01239674
• 34A. Nikolaou, P. Hartmann, A. Sciandra, B. Chachuat, O. Bernard.
  Dynamic coupling of photoacclimation and photoinhibition in a model of microalgae growth, in: Journal of Theoretical Biology, November 2015, vol. 390, n^o 61–72. [ DOI : 10.1016/j.jtbi.2015.11.004 ]
  https://hal.inria.fr/hal-01247049
• 35D. A. Oyarzún, M. Chaves.
  Design of a bistable switch to control cellular uptake, in: Journal of the Royal Society Interface, 2015, vol. 12, n^o 113, 20150618. [ DOI : 10.1098/rsif.2015.0618 ]
  https://hal.archives-ouvertes.fr/hal-01242146
• 36B. Perrier, C. Crampon, O. Guézet, C. Simon, F. Maire, O. Lépine, J. Pruvost, P. Lozano, O. Bernard, E. Badens.
  Production of a methyl ester from the microalgae Nannochloropsis grown in raceways on the French west coast, in: Fuel, August 2015, vol. 153, pp. 640–649. [ DOI : 10.1016/j.fuel.2015.03.011 ]
  https://hal.inria.fr/hal-01247077
• 37C. Poignard, M. Chaves, J.-L. Gouzé.
  Periodic oscillations for non monotonic smooth negative feedback circuits, in: SIAM Journal on Applied Dynamical Systems, 2016, to appear.
  https://hal.archives-ouvertes.fr/hal-01242157
• 38J. Rumin, H. Bonnefond, B. Saint-Jean, C. Rouxel, A. Sciandra, O. Bernard, J.-P. Cadoret, G. Bougaran.
  The use of fluorescent Nile red and BODIPY for lipid measurement in microalgae, in: Biotechnology for Biofuels, 2015, vol. 8, n^o 1, 16 p. [ DOI : 10.1186/s13068-015-0220-4 ]
  https://hal.inria.fr/hal-01247087
• 39V. Turon, C. Baroukh, E. Trably, E. Latrille, E. Fouilland, J.-P. Steyer.
  Use of fermentative metabolites for heterotrophic microalgae growth: Yields and kinetics, in: Bioresource Technology, January 2015, vol. 175, pp. 342-349. [ DOI : 10.1016/j.biortech.2014.10.114 ]
  https://hal.inria.fr/hal-01253781
• 40E. Vercken, X. Fauvergue, N. Ris, D. Crochard, L. Mailleret.
  Temporal autocorrelation in host density increases establishment success of parasitoids in an experimental system, in: Ecology and Evolution, July 2015, vol. 5, n^o 13, pp. 2684–2693. [ DOI : 10.1002/ece3.1505 ]
  https://hal.inria.fr/hal-01239677

International Conferences with Proceedings

• 41S. Casagranda, D. Ropers, J.-L. Gouzé.
  Model reduction and process analysis of biological models, in: 23th Mediterranean Conference on Control and Automation (MED), Torremolinos, Spain, June 2015. [ DOI : 10.1109/MED.2015.7158908 ]
  https://hal.inria.fr/hal-01239356
• 42G. M. Grimaud, V. Le Guennec, S.-D. Ayata, F. Mairet, A. Sciandra, O. Bernard.
  Modelling the effect of temperature on phytoplankton growth across the global ocean, in: 8th Vienna International Conference on Mathematical Modelling — MATHMOD 2015, Vienna, Austria, 2015. [ DOI : 10.1016/j.ifacol.2015.05.059 ]
  https://hal.inria.fr/hal-01245890

National Conferences with Proceedings

• 43E. Rousseau, F. Fabre, J. Coville, L. Mailleret, A. Palloix, R. Senoussi, F. Grognard, B. Moury.
  Joint estimation of effective population sizes and selection coefficients from time-sampled data: a case study on virus populations exposed to plant resistance, in: Rencontres de Virologie Végétale (RVV), Aussois, France, 2015.
  https://hal.archives-ouvertes.fr/hal-01240376
• 44E. Rousseau, F. Fabre, J. Coville, L. Mailleret, A. Palloix, R. Senoussi, F. Grognard, B. Moury.
  Joint estimation of effective population sizes and selection coefficients from time-sampled data: a case study on virus populations submitted to plant resistance, in: 9e Colloque de la Société Française de Phytopathologie, Colmar, France, 2015.
  https://hal.archives-ouvertes.fr/hal-01240375

Conferences without Proceedings

• 45N. Go, C. Belloc, C. Bidot, S. Touzeau.
  Towards a better understanding of the within-host dynamics to PRRSv: insights from modelling approach, in: International Porcine Reproductive And Respiratory Syndrome Congress, Gand, Belgium, June 2015, Poster.
  https://hal.inria.fr/hal-01237154
• 46N. Go, C. Belloc, C. Bidot, S. Touzeau.
  Towards an exploration of PRRSv vaccine efficiency in silico, in: European Symposium of Porcine Health Management, Nantes, France, April 2015, Poster.
  https://hal.inria.fr/hal-01237151
• 47J.-L. Gouzé.
  Contrôle hybride d'un bioréacteur avec des mesures discrètes, in: 35ème Colloque de la Société Francophone de Biologie Théorique, Poitiers, France, June 2015.
  https://hal.inria.fr/hal-01256722
• 48J.-L. Gouzé, F. Mairet, J. A. Sepulchre.
  Control of bio-conversion of polymeric substrate in the chemostat, in: FOSBE, Boston, United States, August 2015.
  https://hal.inria.fr/hal-01245515
• 49G. M. Grimaud, F. Mairet, S.-D. Ayata, A. Sciandra, O. Bernard.
  A simple Adaptive Dynamics model to study the effect of global warming on marine phytoplankton, in: Mathematical Models in Ecology and Evolution, Paris, France, 2015, Poster.
  https://hal.inria.fr/hal-01245900
• 50F. M. Hamelin, A. Bisson, M. L. Desprez Loustau, F. Fabre, L. Mailleret.
  Temporal niche differentiation of closely related parasite species sharing the same plant host. Oak powdery mildew as a case study, in: Models in Population Dynamics and Ecology (MPDE2015), Nitteroi, Brazil, August 2015.
  https://hal.inria.fr/hal-01239834
• 51T. Morel-Journel, C. Rais Assa, L. Mailleret, E. Vercken.
  It’s all about connections: hubs and invasions in habitat networks, in: Annual Meeting of the Ecological Society of America, Baltimore, United States, August 2015.
  https://hal.inria.fr/hal-01239829
• 52C. Poignard.
  Discrete synchronization of massively coupled systems using hierarchical couplings, in: SIAM Conference on Applications of Dynamical Systems, Snowbird, United States, May 2015.
  https://hal.inria.fr/hal-01256727
• 53E. Rousseau, F. Fabre, J. Coville, L. Mailleret, A. Palloix, R. Senoussi, F. Grognard, B. Moury.
  Estimation of genetic drift and selection from next generation sequencing time-sampled data, in: SMBE Satellite meeting SMBEBA 2015, Investigating biological adaptation with NGS: data and models, Leicester, United Kingdom, 2015.
  https://hal.archives-ouvertes.fr/hal-01240378

Scientific Books (or Scientific Book chapters)

• 54O. Bernard, F. Mairet, B. Chachuat.
  Modelling of Microalgae Culture Systems with Applications to Control and Optimization, in: Advances in Biochemical Engineering/Biotechnology, 2015, vol. Microalgae Biotechnology, n^o 153, pp. 59-87. [ DOI : 10.1007/10_2014_287 ]
  https://hal.inria.fr/hal-01245875
• 55P. Bernhard.
  Linear Quadratic Zero-Sum Two-Person Differential Games, in: Encyclopaedia of Systems and Control, Springer-Verlag, 2015, 6 p. [ DOI : 10.1007/978-1-4471-5102-9_29-1 ]
  https://hal.inria.fr/hal-01215550
• 56P. Bernhard.
  Pursuit-Evasion Games and Zero-sum Two-person Differential Games, in: Encyclopaedia of Systems and Control, Springer-Verlag, 2015, 8 p. [ DOI : 10.1007/978-1-4471-5102-9_270-1 ]
  https://hal.inria.fr/hal-01215556

Internal Reports

• 57N. Arsapin.
  Modélisation de l'impact des hautes températures sur les microalgues, Université du Sud Toulon Var, July 2015, M2 internship report.
  https://hal.inria.fr/hal-01256661
• 58V. A. Bernal Arzola.
  Calibration of Personalized Patient Pharmacokinetic Models, Université de Nice Sophia Antipolis, September 2015, M2 Mathsmod Internship report.
  https://hal.inria.fr/hal-01245507
• 59M. Bonneault.
  Conception et étude d’un modèle de gestion durable des variétés de plantes résistantes aux virus dans un paysage agricole, INSA Lyon, August 2015, 2nd year engineering internship report.
  https://hal.inria.fr/hal-01253974
• 60M. Caïa.
  Modélisation de la production de biomasse de microalgues dans des bassins sous serres , ENSAT, August 2015, 3rd year engineering internship report.
  https://hal.inria.fr/hal-01256684
• 61T. Lecieux.
  Réponse physiologique d'une cyanobactérie à la température, Master d’Océanographie – Spécialité Biologie Ecologie Marine, Université Aix-Marseille, June 2015, M2 internship report.
  https://hal.inria.fr/hal-01256639
• 62Y. Lie.
  Réduction de la taille des antennes photosynthétiques d'une microalgue par pression de séléction, ENSAT, August 2015, 3rd year engineering internship report.
  https://hal.inria.fr/hal-01256668
• 63M. Mercat.
  Évolution de la virulence chez un nématode phytoparasite : optimisation et analyse de sensibilité des stratégies de déploiement temporel de plantes résistantes, Université de Rennes 1, June 2015, 22 p, M1 internship report.
  https://hal.inria.fr/hal-01255275
• 64P. Moussion.
  Modélisation de la production de microalgues sous serre photovoltaique, ENSAT, August 2015, 3rd year engineering internship report.
  https://hal.inria.fr/hal-01256680
• 65R. Tching Chi Yen.
  Modélisation de l’interaction entre gènes pour évaluer la durabilité de résistances variétales, INSA Lyon, August 2015, 2nd year engineering internship report.
  https://hal.inria.fr/hal-01255278

Scientific Popularization

• 66J. Roux, J.-L. Gouzé, P. Hofman.
  Intraclonal heterogeneity in tumors and its impact on precision medicine, in: médecine/sciences, January 2015, vol. 31, n^o 1. [ DOI : 10.1051/medsci/20153101009 ]
  https://hal.inria.fr/hal-01259249
• 67T. Vieville, S. Boldo, F. Masseglia, P. Bernhard.
  « Structures : organisation, complexité, dynamique » des mot-clés au sens inattendu, April 2015, Article de vulgarisation sur pixees.fr.
  https://hal.inria.fr/hal-01238442

Other Publications

• 68S. Almeida, M. Chaves, J.-L. Gouzé, F. Delaunay.
  Modeling and coupling biorhythms, November 2015, 2nd Labex SIGNALIFE Meeting, Poster.
  https://hal.archives-ouvertes.fr/hal-01242199
• 69E. Rousseau, F. Fabre, J. Coville, L. Mailleret, A. Palloix, R. Senoussi, B. Moury, F. Grognard.
  Joint estimation of the strength of genetic drift and selection from next generation sequencing time-sampled data : a case study on the adaptation of virus populations to host plant resistance, December 2015, working paper or preprint.
  https://hal.archives-ouvertes.fr/hal-01240377

References in notes

• 70N. Bajeux, F. Grognard, L. Mailleret.
  Introduction strategies for biological control agents subject to Allee effects, in: 21st International Symposium on Mathematical Theory of Networks and Systems, Grogningen, Netherlands, July 2014.
  https://hal.inria.fr/hal-00968180
• 71N. Bajeux, F. Grognard, L. Mailleret.
  Augmentative biocontrol when natural enemies are subject to Allee effects, 2015, submitted.
• 72C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.
  A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgae, in: Computer Applied to Biotechnology, Mumbai, India, December 2013.
  http://hal.inria.fr/hal-00856042
• 73T. Bayen, F. Mairet.
  Optimization of the separation of two species in a chemostat, in: Automatica, April 2014, vol. 50, n^o 4, pp. 1243-1248. [ DOI : 10.1016/j.automatica.2014.02.024 ]
  https://hal.archives-ouvertes.fr/hal-00817147
• 74T. Bayen, F. Mairet, P. Martinon, M. Sebbah.
  Analysis of a periodic optimal control problem connected to microalgae anaerobic digestion, in: Optimal Control Applications and Methods, June 2014, 24 p. [ DOI : 10.1002/oca.2127 ]
  https://hal.archives-ouvertes.fr/hal-00860570
• 75T. Bayen, F. Mairet, M. Mazade.
  Optimal feeding strategy for the minimal time problem of a fed-batch bioreactor with mortality rate, Inria Sophia Antipolis, 2012.
  https://hal.archives-ouvertes.fr/hal-00759058
• 76O. Bernard.
  TELEMAC Deliverable 3.4: Final version of the Telemac advanced control module, 2004.
• 77O. Bernard.
  La production de micro-algues sous serre photovoltaique : évolution ou révolution ?, in: Revue de l'Energie, November 2014, vol. 621, pp. 385-392.
  https://hal.inria.fr/hal-01101142
• 78O. Bernard, B. Rémond.
  Validation of a simple model accounting for light and temperature effect on microalgal growth, in: Bioresource Technology, 2012, vol. 123, pp. 520-527. [ DOI : 10.1016/j.biortech.2012.07.022 ]
  http://hal.inria.fr/hal-00848389
• 79O. Bernard, J. Sainte-Marie, B. Sialve, J.-P. Steyer.
  Hydrodynamics-Biology Coupling for Algae Culture and Biofuel Production, in: ERCIM News, 2013, vol. 92, 47 p.
  http://hal.inria.fr/hal-00850370
• 80V. Calcagno, F. Grognard, F. M. Hamelin, E. Wajnberg, L. Mailleret.
  The functional response predicts the effect of resource distribution on the optimal movement rate of consumers, in: Ecology Letters, December 2014, vol. 17, n^o 12, pp. 1570-1579. [ DOI : 10.1111/ele.12379 ]
  https://hal.inria.fr/hal-01084299
• 81V. Calcagno, L. Mailleret, E. Wajnberg, F. Grognard.
  How optimal foragers should respond to habitat changes: a reanalysis of the Marginal Value Theorem, in: Journal of Mathematical Biology, November 2014, vol. 69, n^o 5, pp. 1237-1265. [ DOI : 10.1007/s00285-013-0734-y ]
  https://hal.inria.fr/hal-00871355
• 82A. Carta, M. Chaves, J.-L. Gouzé.
  A class of Switched Piecewise Quadratic Systems for coupling gene expression with growth rate in bacteria, in: 9th IFAC Symposium Nonlinear Control Systems (NOLCOS'13), Toulouse, France, S. Tarbouriech, M. Krstic (editors), IFAC, 2013, vol. 9 Part 1, pp. 271-276. [ DOI : 10.3182/20130904-3-FR-2041.00140 ]
  http://hal.inria.fr/hal-00850372
• 83M. Chaves, A. Carta.
  Attractor computation using interconnected Boolean networks: testing growth rate models in E. Coli, in: Theoretical Computer Science, 2014, 17 p. [ DOI : 10.1016/j.tcs.2014.06.021 ]
  https://hal.inria.fr/hal-01095196
• 84D. Demory.
  Étude théorique et expérimentale de l'effet de l'hydrodynamique sur la photosynthèse du phytoplancton par un dispositif novateur à base de LED, Université Pierre and Marie Curie, Paris VI, 2013.
  http://hal.inria.fr/hal-00852252
• 85N. Giordano, F. Mairet, J.-L. Gouzé, J. Geiselmann, H. De Jong.
  Dynamic optimisation of resource allocation in microorganisms, in: 21st International Symposium on Mathematical Theory of Networks and Systems (MTNS 2014), Groningen, Netherlands, July 2014.
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• 86J.-L. Gouzé, A. Rapaport, Z. Hadj-Sadok.
  Interval observers for uncertain biological systems, in: Ecological modelling, 2000, vol. 133, pp. 45-56.
  http://dx.doi.org/10.1016/S0304-3800(00)00279-9
• 87G. M. Grimaud, A. Dron, S. Rabouille, A. Sciandra, O. Bernard.
  Modelling light-dark regime influence on the carbon-nitrogen metabolism in a unicellular diazotrophic cyanobacterium, in: CAB, Mumbai, India, December 2013.
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• 88G. M. Grimaud, F. Mairet, O. Bernard.
  Modelling thermal adaptation in microalgae : an adaptive dynamics point of view, in: 19th IFAC World Congress, Cape Town, South Africa, August 2014, pp. 4376-4381. [ DOI : 10.3182/20140824-6-ZA-1003.00982 ]
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• 89F. M. Hamelin, M. Castel, S. Poggi, D. Andrivon, L. Mailleret.
  Seasonality and the evolutionary divergence of plant parasites, in: Ecology, 2011, vol. 92, pp. 2159-2166.
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• 90P. Hartmann, Q. Béchet, O. Bernard.
  The effect of Time Scales in Photosynthesis on microalgae Productivity, in: Bioprocess and Biosystems Engineering, 2014, vol. 37, n^o 1, pp. 17-25. [ DOI : 10.1007/s00449-013-1031-2 ]
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• 91P. Hartmann, Q. Béchet, O. Bernard.
  Interaction between Time Scales in Microalgae Based Processes, in: 20th Mediterranean Conference on Control & Automation (MED), Barcelona, Espagne, IEEE, 2012, pp. 561–566. [ DOI : 10.1109/MED.2012.6265697 ]
  http://hal.inria.fr/hal-00848416
• 92P. Hartmann, D. Demory, C. Combe, R. Hamouda, J. Sainte-Marie, M.-O. Bristeau, A.-C. Boulanger, B. Sialve, J.-P. Steyer, S. Rabouille, A. Sciandra, O. Bernard.
  Growth Rate Estimation of Algae in Raceway Ponds: A Novel Approach, in: 19th IFAC World Congress, Cape Town, South Africa, August 2014. [ DOI : 10.3182/20140824-6-ZA-1003.02408 ]
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• 93G. Kerlero de Rosbo, O. Bernard.
  Évaluation du gisement potentiel de ressources algales pour l’énergie et la chimie en France à horizon 2030, ADEME, November 2014, 164 p.
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• 94L. Lardon, A. Hélias, B. Sialve, J.-P. Steyer, O. Bernard.
  Life-Cycle Assessment of Biodiesel Production from Microalgae, in: Environ. Sci. Technol., 2009, vol. 43, pp. 6475-6481.
• 95L. Mailleret, M. Castel, J. Montarry, F. M. Hamelin.
  From elaborate to compact seasonal plant epidemic models and back: is competitive exclusion in the details?, in: Theoretical Ecology, 2012, vol. 5, n^o 3, pp. 311 - 324. [ DOI : 10.1007/s12080-011-0126-0 ]
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• 96L. Mailleret, V. Lemesle.
  A note on semi-discrete modelling in the life sciences, in: Philosophical Transactions of the Royal Society A: Mathematical,Physical and Engineering Sciences, 2009, vol. 367, n^o 1908, pp. 4779-4799. [ DOI : 10.1098/rsta.2009.0153 ]
  http://rsta.royalsocietypublishing.org/content/367/1908/4779.abstract
• 97F. Mairet, O. Bernard, E. Cameron, M. Ras, L. Lardon, J.-P. Steyer, B. Chachuat.
  Three-reaction model for the anaerobic digestion of microalgae, in: Biotech. Bioeng., 2012, vol. 109, n^o 2, pp. 415-425.
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• 98F. Mairet, O. Bernard.
  Robustness of Closed-Loop Control to Biodiversity: a Didactic Example, in: 19th IFAC World Congress, Cape Town, South Africa, August 2014, pp. 5321-5326. [ DOI : 10.3182/20140824-6-ZA-1003.02193 ]
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• 99F. Mairet, O. Bernard, M. Ras, L. Lardon, J.-P. Steyer.
  Modeling anaerobic digestion of microalgae using ADM1, in: Bioresource Technology, 2011, vol. 102, n^o 13, pp. 6823–6829.
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• 100F. Mairet, M. Moisan, O. Bernard.
  Estimation of neutral lipid and carbohydrate quotas in microalgae using adaptive interval observers, in: Bioprocess and Biosystems Engineering, January 2014, vol. 37, n^o 1, pp. 51-61. [ DOI : 10.1007/s00449-013-0913-7 ]
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• 101F. Mairet, M. Moisan, O. Bernard.
  Interval observer with near optimal adaptation dynamics. Application to the estimation of lipid quota in microalgae, in: International Journal of Robust and Nonlinear Control, April 2014, vol. 24, n^o 6, pp. 1142-1157. [ DOI : 10.1002/rnc.2934 ]
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• 102F. Mairet, R. Muñoz-Tamayo, O. Bernard.
  Driving Species Competition in a Light-limited Chemostat, in: 9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Toulouse, France, 2013.
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• 103P. Masci, O. Bernard, F. Grognard.
  Continuous Selection of the Fastest Growing Species in the Chemostat, in: Proceedings of the IFAC conference, Seoul, Korea, 2008.
• 104F. Mazenc, O. Bernard.
  ISS Interval Observers for Nonlinear Systems Transformed Into Triangular Systems, in: International Journal of Robust and Nonlinear Control, May 2014, vol. 24, n^o 7, pp. 1241–1261. [ DOI : 10.1002/rnc.2937 ]
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• 105J. Moreno.
  Optimal time control of bioreactors for the wastewater treatment, in: Optimal Control Applications and Methods, 1999, vol. 20, n^o 3, pp. 145–164.
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• 106R. Muñoz-Tamayo, F. Mairet, O. Bernard.
  Driving microalgal production in raceway systems to near optimal productivities, in: European Control Conference (ECC13), Zurich, Switzerland, 2013.
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• 107R. Muñoz-Tamayo, F. Mairet, O. Bernard.
  Optimizing microalgal production in raceway systems, in: Biotechnology Progress, 2013, vol. 29, n^o 2, pp. 543–552. [ DOI : 10.1002/btpr.1699 ]
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• 108S. Nundloll.
  Dos and don'ts in augmentative biological control: insights from mathematical modelling, Université de Nice-Sophia Antipolis, 2010.
• 109D. A. Oyarzún, M. Chaves, M. Hoff-Hoffmeyer-Zlotnik.
  Multistability and oscillations in genetic control of metabolism, in: Journal of Theoretical Biology, 2012, vol. 295, pp. 139-153. [ DOI : 10.1016/j.jtbi.2011.11.017 ]
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• 110T. Perrot.
  Evolution de la virulence chez un nématode phytoparasite: modélisation et optimisation du déploiement des plantes résistantes, Université de Montpellier 2, June 2014.
  https://hal.inria.fr/hal-01096844
• 111M. Ras, J.-P. Steyer, O. Bernard.
  Temperature effect on microalgae: a crucial factor for outdoor production, in: Reviews in Environmental Science and Bio/Technology, 2013, vol. 12, n^o 2, pp. 153-164. [ DOI : 10.1007/s11157-013-9310-6 ]
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• 112B. Sialve, N. Bernet, O. Bernard.
  Anaerobic digestion of microalgae as a necessary step to make microalgal biodiesel sustainable, in: Biotechnol. Advances, 2009, vol. 27, pp. 409-416.
• 113B. Sialve, J.-P. Steyer, E. Latrille, O. Bernard, G. Bougaran, R. Kaas, J.-P. Cadoret.
  Procédé de fixation de CO2 et de traitement des déchets organiques par couplage d'un système de digestion anaérobie et d'un système de production de microorganismes phytoplanctoniques, 2009, n^o 09/50334.
• 114Task Group for Mathematical Modelling of Anaerobic Digestion Processes I. W. A.
  Anaerobic Digestion Model No. 1 (ADM1), IWA Publishing, London, 2002.
• 115L. Tournier, M. Chaves.
  Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics, in: Automatica, 2013, vol. 49, n^o 4, pp. 884-893. [ DOI : 10.1016/j.automatica.2013.01.015, ]
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