<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1 plus MathML 2.0 plus SVG 1.1//EN" "http://www.w3.org/2002/04/xhtml-math-svg/xhtml-math-svg.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
  <head>
    <meta http-equiv="Content-Type" content="application/xhtml+xml; charset=utf-8"/>
    <title>Project-Team:LIFEWARE</title>
    <link rel="stylesheet" href="../static/css/raweb.css" type="text/css"/>
    <meta name="description" content="Computational systems biology and optimization"/>
    <meta name="dc.title" content="Computational systems biology and optimization"/>
    <meta name="dc.subject" content=""/>
    <meta name="dc.publisher" content="INRIA"/>
    <meta name="dc.date" content="(SCHEME=ISO8601) 2015-01"/>
    <meta name="dc.type" content="Report"/>
    <meta name="dc.language" content="(SCHEME=ISO639-1) en"/>
    <meta name="projet" content="LIFEWARE"/>
    <!-- Piwik -->
    <script type="text/javascript" src="/rapportsactivite/piwik.js"></script>
    <noscript><p><img src="//piwik.inria.fr/piwik.php?idsite=49" style="border:0;" alt="" /></p></noscript>
    <!-- End Piwik Code -->
  </head>
  <body>
    <div class="tdmdiv">
      <div class="logo">
        <a href="http://www.inria.fr">
          <img style="align:bottom; border:none" src="../static/img/icons/logo_INRIA-coul.jpg" alt="Inria"/>
        </a>
      </div>
      <div class="TdmEntry">
        <div class="tdmentete">
          <a href="uid0.html">Project-Team Lifeware</a>
        </div>
        <span>
          <a href="uid1.html">Members</a>
        </span>
      </div>
      <div class="TdmEntry">
        <a href="./uid3.html">Overall Objectives</a>
      </div>
      <div class="TdmEntry">Research Program<ul><li><a href="uid5.html&#10;&#9;&#9;  ">Computational Systems Biology</a></li><li><a href="uid6.html&#10;&#9;&#9;  ">Modeling of Cellular Processes</a></li><li><a href="uid7.html&#10;&#9;&#9;  ">External Control of Cell Processes</a></li><li><a href="uid9.html&#10;&#9;&#9;  ">Chemical Reaction Network Theory</a></li><li><a href="uid11.html&#10;&#9;&#9;  ">Logical Paradigm for Systems Biology</a></li><li><a href="uid13.html&#10;&#9;&#9;  ">Constraint solving and optimization</a></li></ul></div>
      <div class="TdmEntry">Application Domains<ul><li><a href="uid17.html&#10;&#9;&#9;  ">Preamble</a></li><li><a href="uid18.html&#10;&#9;&#9;  ">Modeling platform for systems biology</a></li><li><a href="uid19.html&#10;&#9;&#9;  ">Couplings between the cell cycle and the circadian clock</a></li><li><a href="uid21.html&#10;&#9;&#9;  ">Biosensor design and implementation in non-living vesicles</a></li></ul></div>
      <div class="TdmEntry">
        <a href="./uid23.html">Highlights of the Year</a>
      </div>
      <div class="TdmEntry">New Software and Platforms<ul><li><a href="uid25.html&#10;&#9;&#9;  ">BIOCHAM</a></li><li><a href="uid29.html&#10;&#9;&#9;  ">BIOCHAM-WEB</a></li><li><a href="uid33.html&#10;&#9;&#9;  ">CellStar</a></li><li><a href="uid37.html&#10;&#9;&#9;  ">ClpZinc</a></li></ul></div>
      <div class="TdmEntry">New Results<ul><li><a href="uid42.html&#10;&#9;&#9;  ">Hybrid Simulation of Heterogeneous Biochemical Models in SBML</a></li><li><a href="uid43.html&#10;&#9;&#9;  ">Theoretical and Practical Complexities of Enumerating Minimal Siphons in Petri Nets</a></li><li><a href="uid44.html&#10;&#9;&#9;  ">Abstraction-based Parameter Synthesis for Multiaffine Systems</a></li><li><a href="uid45.html&#10;&#9;&#9;  ">Tropical Algebra Methods for Model Reduction</a></li><li><a href="uid47.html&#10;&#9;&#9;  ">Modeling the Effect of the Cell Cycle on the Circadian Clock in Mouse Embryonic Fibroblasts</a></li><li><a href="uid48.html&#10;&#9;&#9;  ">Effects of repeated osmotic stress on gene expression and growth:
from cell-to-cell variability to cellular individuality in the budding yeast Saccharomyces cerevisiae</a></li><li><a href="uid49.html&#10;&#9;&#9;  ">Resistance to anti-cancer drugs by non-mutational mechanisms: insights from a cell-based multi-scale model of TRAIL-induced apoptosis</a></li><li><a href="uid50.html&#10;&#9;&#9;  ">Controlling a genetic inverted pendulum</a></li><li><a href="uid51.html&#10;&#9;&#9;  ">Synthesizing Configurable Biochemical Implementation of Linear Systems from Their Transfer Function Specifications</a></li><li><a href="uid52.html&#10;&#9;&#9;  ">Reconfigurable Neuromorphic Computation in Biochemical Systems</a></li><li><a href="uid53.html&#10;&#9;&#9;  ">Search by Constraint Propagation</a></li><li><a href="uid54.html&#10;&#9;&#9;  ">Execution models for Constraint Programming and Semantics Equivalence</a></li><li><a href="uid55.html&#10;&#9;&#9;  ">On Translating MiniZinc Constraint Model into Fitness Functions: Application to Continuous Placement Problems.</a></li></ul></div>
      <div class="TdmEntry">Partnerships and Cooperations<ul><li><a href="uid57.html&#10;&#9;&#9;  ">National Initiatives</a></li><li><a href="uid65.html&#10;&#9;&#9;  ">International Initiatives</a></li><li><a href="uid70.html&#10;&#9;&#9;  ">International Research Visitors</a></li></ul></div>
      <div class="TdmEntry">Dissemination<ul><li><a href="uid76.html&#10;&#9;&#9;  ">Promoting Scientific Activities</a></li><li><a href="uid135.html&#10;&#9;&#9;  ">Teaching - Supervision - Juries</a></li><li><a href="uid157.html&#10;&#9;&#9;  ">Popularization</a></li></ul></div>
      <div class="TdmEntry">
        <div>Bibliography</div>
      </div>
      <div class="TdmEntry">
        <ul>
          <li>
            <a id="tdmbibentyear" href="bibliography.html">Publications of the year</a>
          </li>
        </ul>
      </div>
    </div>
    <div id="main">
      <div class="mainentete">
        <div id="head_agauche">
          <small><a href="http://www.inria.fr">
	    
	    Inria
	  </a> | <a href="../index.html">
	    
	    Raweb 
	    2015</a> | <a href="http://www.inria.fr/en/teams/lifeware">Presentation of the Project-Team LIFEWARE</a> | <a href="http://lifeware.inria.fr/">LIFEWARE Web Site
	  </a></small>
        </div>
        <div id="head_adroite">
          <table class="qrcode">
            <tr>
              <td>
                <a href="lifeware.xml">
                  <img style="align:bottom; border:none" alt="XML" src="../static/img/icons/xml_motif.png"/>
                </a>
              </td>
              <td>
                <a href="lifeware.pdf">
                  <img style="align:bottom; border:none" alt="PDF" src="IMG/qrcode-lifeware-pdf.png"/>
                </a>
              </td>
              <td>
                <a href="../lifeware/lifeware.epub">
                  <img style="align:bottom; border:none" alt="e-pub" src="IMG/qrcode-lifeware-epub.png"/>
                </a>
              </td>
            </tr>
            <tr>
              <td/>
              <td>PDF
</td>
              <td>e-Pub
</td>
            </tr>
          </table>
        </div>
      </div>
      <!--FIN du corps du module-->
      <br/>
      <div class="bottomNavigation">
        <div class="tail_aucentre">
          <a href="./uid0.html" accesskey="U"><img style="align:bottom; border:none" alt="up" src="../static/img/icons/up_motif.jpg"/>  Home</a>
          <a href="./uid1.html" accesskey="N"> | Next <img style="align:bottom; border:none" alt="next" src="../static/img/icons/next_motif.jpg"/></a>
        </div>
        <br/>
      </div>
      <!--DEBUT1 du corps du module-->
      <div class="mainpage1">
        <div class="Titrepage1">2015 Project-Team Activity Report
	</div>
        <div class="Projetpage1">
          <div class="ProjetCourtpage1">LIFEWARE</div>
          <div class="ProjetLongpage1">Computational systems biology and optimization<div class="DescriptionTeam"/></div>
        </div>
        <div class="CRpage1">
          <span class="definition">Research centre: </span>
          <a href="http://www.inria.fr/centre/paris-rocquencourt/">Paris - Rocquencourt</a>
        </div>
        <div class="partner">
          <br/>
        </div>
        <div class="domainepage1"><span class="definition">Field: </span><a href="&#10;&#9;      http://www.inria.fr/en/domains/Digital-Health-Biology-and-Earth">Digital Health, Biology and Earth</a><br/><span class="definition">Theme: </span>Computational Biology</div>
        <div class="Keywordspage">
          <span class="definition">Keywords: </span>
        </div>
        <div class="Keywordspage1">
          <span class="definition2">
            <a href="http://raweb.inria.fr/rapportsactivite/RA2015/static/keywords/ComputerScienceandDigitalScience.html">Computer Science and Digital Science: </a>
          </span>
          <ul>
            <li>2.1.1. - Semantics of programming languages</li>
            <li>2.1.10. - Domain-specific languages</li>
            <li>2.1.5. - Constraint programming</li>
            <li>2.2.1. - Static analysis</li>
            <li>2.3.2. - Cyber-physical systems</li>
            <li>6. - Modeling, simulation and control</li>
            <li>6.1. - Mathematical Modeling</li>
            <li>6.1.1. - Continuous Modeling (PDE, ODE)</li>
            <li>6.1.2. - Stochastic Modeling (SPDE, SDE)</li>
            <li>6.1.3. - Discrete Modeling (multi-agent, people centered)</li>
            <li>6.1.4. - Multiscale modeling</li>
            <li>6.1.5. - Multiphysics modeling</li>
            <li>6.2.6. - Optimization</li>
            <li>6.3.1. - Inverse problems</li>
            <li>7.2. - Discrete mathematics, combinatorics</li>
            <li>7.3. - Operations research, optimization, game theory</li>
            <li>7.4. - Logic in Computer Science</li>
            <li>7.9. - Graph theory</li>
            <li>8.7. - AI algorithmics</li>
          </ul>
        </div>
        <div class="Keywordspage2">
          <span class="definition2">
            <a href="http://raweb.inria.fr/rapportsactivite/RA2015/static/keywords/OtherResearchTopicsandApplicationDomains.html">Other Research Topics and Application Domains: </a>
          </span>
          <ul>
            <li>1. - Life sciences</li>
            <li>1.1.10. - Mathematical biology</li>
            <li>1.1.11. - Systems biology</li>
            <li>1.1.12. - Synthetic biology</li>
            <li>1.1.2. - Molecular biology</li>
            <li>1.1.3. - Cellular biology</li>
            <li>1.1.9. - Bioinformatics</li>
            <li>2. - Health</li>
            <li>2.2.3. - Cancer</li>
            <li>2.4.2. - Drug resistance</li>
            <li>7. - Transport and logistics</li>
            <li>9. - Society and Knowledge</li>
          </ul>
        </div>
      </div>
    </div>
  </body>
</html>
