Project-Team Reo
Personnel
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
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Bibliography

Major publications by the team in recent years
  • 1L. Boudin, L. Desvillettes, C. Grandmont, A. Moussa.
    Global existence of solutions for the coupled Vlasov and Navier-Stokes equations, in: Differential and integral equations, November 2009, vol. 22, no 11-12, pp. 1247-1271.
    https://hal.archives-ouvertes.fr/hal-00331895
  • 2L. Boudin, B. Grec, F. Salvarani.
    A mathematical and numerical analysis of the Maxwell-Stefan diffusion equations, in: Discrete and Continuous Dynamical Systems - Series B, 2012, vol. 17, no 5, pp. 1427-1440. [ DOI : 10.3934/dcdsb.2012.17.1427 ]
    https://hal.archives-ouvertes.fr/hal-00490511
  • 3M. Boulakia, S. Cazeau, M. A. Fernández, J.-F. Gerbeau, N. Zemzemi.
    Mathematical Modeling of Electrocardiograms: A Numerical Study, in: Annals of Biomedical Engineering, 2010, vol. 38, no 3, pp. 1071-1097. [ DOI : 10.1007/s10439-009-9873-0 ]
    https://hal.inria.fr/inria-00400490
  • 4M. Boulakia, S. Guerrero.
    Regular solutions of a problem coupling a compressible fluid and an elastic structure, in: Journal de Mathématiques Pures et Appliquées, 2010, vol. 94, no 4, pp. 341-365. [ DOI : 10.1016/j.matpur.2010.04.002 ]
    https://hal.inria.fr/hal-00648710
  • 5J. Christophe, T. Ishikawa, N. Matsuki, Y. Imai, K. Takase, M. Thiriet, T. Yamaguchi.
    Patient-specific morphological and blood flow analysis of pulmonary artery in the case of severe deformations of the lung due to pneumothorax, in: Journal of Biomechanical Science and Engineering, 2010, vol. 5, no 5, pp. 485-498.
    https://hal.inria.fr/inria-00543090
  • 6M. A. Fernández, J. Mullaert, M. Vidrascu.
    Explicit Robin-Neumann schemes for the coupling of incompressible fluids with thin-walled structures, in: Computer Methods in Applied Mechanics and Engineering, 2013, vol. 267, pp. 566-593. [ DOI : 10.1016/j.cma.2013.09.020 ]
    https://hal.inria.fr/hal-00784903
  • 7J.-F. Gerbeau, D. Lombardi.
    Approximated Lax Pairs for the Reduced Order Integration of Nonlinear Evolution Equations, in: Journal of Computational Physics, May 2014, vol. 265, pp. 246-269. [ DOI : 10.1016/j.jcp.2014.01.047 ]
    https://hal.inria.fr/hal-00933172
  • 8C. Grandmont, M. Hillairet.
    Existence of global strong solutions to a beam-fluid interaction system, in: Archive for Rational Mechanics and Analysis, 2016. [ DOI : 10.1007/s00205-015-0954-y ]
    https://hal.inria.fr/hal-01138736
  • 9P. Moireau, C. Bertoglio, N. Xiao, C. A. Figueroa, C. Taylor, D. Chapelle, J.-F. Gerbeau.
    Sequential identification of boundary support parameters in a fluid-structure vascular model using patient image data, in: Biomechanics and Modeling in Mechanobiology, July 2012, vol. 12, no 3, pp. 475-496. [ DOI : 10.1007/s10237-012-0418-3 ]
    https://hal.inria.fr/hal-00760703
  • 10S. Pant, B. Fabrèges, J.-F. Gerbeau, I. Vignon-Clementel.
    A methodological paradigm for patient-specific multi-scale CFD simulations: from clinical measurements to parameter estimates for individual analysis, in: International Journal for Numerical Methods in Biomedical Engineering, December 2014, vol. 30, no 12, pp. 1614–1648. [ DOI : 10.1002/cnm.2692 ]
    https://hal.inria.fr/hal-01093879
  • 11I. Vignon-Clementel, A. Marsden, J. Feinstein.
    A Primer on Computational Simulation in Congenital Heart Disease for the Clinician, in: Progress in Pediatric Cardiology, 2010, vol. 30, no 1-2, pp. 3-13, Fondation Leducq. [ DOI : 10.1016/j.ppedcard.2010.09.002 ]
    https://hal.inria.fr/inria-00542957
Publications of the year

Doctoral Dissertations and Habilitation Theses

Articles in International Peer-Reviewed Journals

  • 14E. Abbate, M. Boulakia, Y. Coudière, J.-F. Gerbeau, P. Zitoun, N. Zemzemi.
    In silico assessment of the effects of various compounds in MEA/hiPSC-CM assays: Modelling and numerical simulations, in: Journal of Pharmacological and Toxicological Methods, July 2017, forthcoming.
    https://hal.inria.fr/hal-01562673
  • 15M. Aletti, D. Lombardi.
    A Reduced Order representation of the Poincaré-Steklov operator: an application to coupled multi-physics problems, in: International Journal for Numerical Methods in Engineering, 2017.
    https://hal-auf.archives-ouvertes.fr/hal-01396286
  • 16C. Audebert, P. Bucur, M. Bekheit, E. Vibert, I. Vignon-Clementel, J.-F. Gerbeau.
    Kinetic scheme for arterial and venous blood flow, and application to partial hepatectomy modeling, in: Computer Methods in Applied Mechanics and Engineering, February 2017, vol. 314, pp. 102-125. [ DOI : 10.1016/j.cma.2016.07.009 ]
    https://hal.archives-ouvertes.fr/hal-01347500
  • 17C. Bertoglio, A. Caiazzo, Y. Bazilevs, M. Braack, M. Esmaily, V. Gravemeier, A. Marsden, O. Pironneau, I. Vignon-Clementel, W. A. Wall.
    Benchmark problems for numerical treatment of backflow at open boundaries, in: International Journal for Numerical Methods in Biomedical Engineering, 2017. [ DOI : 10.1002/cnm.2918 ]
    https://hal.inria.fr/hal-01569770
  • 18F. Bonaldi, G. Geymonat, F. Krasucki, M. Vidrascu.
    Mathematical and numerical modeling of plate dynamics with rotational inertia, in: Journal of Numerical Mathematics, 2017, pp. 1 - 20. [ DOI : 10.1515/jnma-2016-1020 ]
    https://hal.inria.fr/hal-01413037
  • 19L. Boudin, C. Grandmont, A. Moussa.
    Global existence of solutions to the incompressible Navier-Stokes-Vlasov equations in a time-dependent domain, in: Journal of Differential Equations, February 2017. [ DOI : 10.1016/j.jde.2016.10.012 ]
    https://hal.inria.fr/hal-01312262
  • 20L. Boudin, B. Grec, V. Pavan.
    The Maxwell-Stefan diffusion limit for a kinetic model of mixtures with general cross sections, in: Nonlinear Analysis: Theory, Methods and Applications, February 2017, vol. 159, pp. 40-61. [ DOI : 10.1016/j.na.2017.01.010 ]
    https://hal.inria.fr/hal-01303312
  • 21M. Boulakia, S. Guerrero.
    On the interaction problem between a compressible fluid and a Saint-Venant Kirchhoff elastic structure, in: Advances in Differential Equations, January 2017, vol. 22, no 1-2.
    https://hal.inria.fr/hal-01229577
  • 22M. Boulakia, E. Schenone.
    Stability estimates for some parameters of a reaction-diffusion equation coupled with an ODE, in: Applicable Analysis, 2017, vol. 96, no 7.
    https://hal.inria.fr/hal-01227427
  • 23P. O. Bucur, M. Bekheit, C. Audebert, A. Othman, S. Hammad, M. Sebagh, M. A. Allard, B. Decante, A. Friebel, D. Drasdo, E. Miquelestorena-Standley, J. G. Hengstler, I. Vignon-Clementel, E. Vibert.
    Modulating Portal Hemodynamics With Vascular Ring Allows Efficient Regeneration After Partial Hepatectomy in a Porcine Model, in: Annals of Surgery, February 2017. [ DOI : 10.1097/SLA.0000000000002146 ]
    https://hal.archives-ouvertes.fr/hal-01494844
  • 24P. Bucur, M. Bekheit, C. Audebert, I. E. Vignon-Clementel, E. Vibert.
    Simplified technique for 75% and 90% hepatic resection with hemodynamic monitoring in large white swine model, in: Journal of Surgical Research, March 2017, vol. 209, pp. 122-130. [ DOI : 10.1016/j.jss.2016.09.018 ]
    https://hal.archives-ouvertes.fr/hal-01405171
  • 25E. Burman, A. Ern, M. A. Fernández.
    Fractional-step methods and finite elements with symmetric stabilization for the transient Oseen problem, in: ESAIM: Mathematical Modelling and Numerical Analysis, March 2017, vol. 51, no 2, pp. 487-507. [ DOI : 10.1051/m2an/2016028 ]
    https://hal.inria.fr/hal-01218328
  • 26C.-Y. Chiang, O. Pironneau, T. W. H. Sheu, M. Thiriet.
    Numerical Study of a 3D Eulerian Monolithic Formulation for Incompressible Fluid-Structures Systems, in: Fluids, June 2017, vol. 2, no 2, pp. 34-53. [ DOI : 10.3390/fluids2020034 ]
    http://hal.upmc.fr/hal-01558747
  • 27V. Ehrlacher, D. Lombardi.
    A dynamical adaptive tensor method for the Vlasov-Poisson system, in: Journal of Computational Physics, 2017, vol. 319, pp. 285-306.
    https://hal.archives-ouvertes.fr/hal-01335507
  • 28M. Landajuela, M. Vidrascu, D. Chapelle, M. A. Fernández.
    Coupling schemes for the FSI forward prediction challenge: comparative study and validation, in: International Journal for Numerical Methods in Biomedical Engineering, 2017, vol. 33, no 4, e02813 p. [ DOI : 10.1002/cnm.2813 ]
    https://hal.inria.fr/hal-01239931
  • 29S. Pant, C. Corsini, C. Baker, T.-Y. Hsia, G. Pennati, I. Vignon-Clementel.
    Inverse problems in reduced order models of cardiovascular haemodynamics: aspects of data-assimilation and heart-rate variability, in: Journal of the Royal Society Interface, 2017.
    https://hal.inria.fr/hal-01413446
  • 30N. Pozin, S. Montesantos, I. Katz, M. Pichelin, C. Grandmont, I. Vignon-Clementel.
    Calculated Ventilation and Effort Distribution as a Measure Of Respiratory Disease and Heliox Effectiveness, in: Journal of Biomechanics, June 2017, no 60C, pp. 100-109. [ DOI : 10.1016/j.jbiomech.2017.06.009 ]
    https://hal.archives-ouvertes.fr/hal-01468861
  • 31N. Pozin, S. Montesantos, I. Katz, M. Pichelin, I. E. Vignon-Clementel, C. Grandmont.
    A tree-parenchyma coupled model for lung ventilation simulation, in: International Journal for Numerical Methods in Biomedical Engineering, February 2017. [ DOI : 10.1002/cnm.2873 ]
    https://hal.archives-ouvertes.fr/hal-01407055
  • 32F. Raphel, M. Boulakia, N. Zemzemi, Y. Coudière, J.-M. Guillon, P. Zitoun, J.-F. Gerbeau.
    Identification of ion currents components generating field potential recorded in MEA from hiPSC-CM, in: IEEE Transactions on Biomedical Engineering, 2017, In press. [ DOI : 10.1109/TBME.2017.2748798 ]
    https://hal.archives-ouvertes.fr/hal-01570341
  • 33E. Tixier, D. Lombardi, B. Rodriguez, J.-F. Gerbeau.
    Modeling Variability in Cardiac Electrophysiology: A Moment Matching Approach, in: Journal of the Royal Society Interface, August 2017, vol. 14, no 133. [ DOI : 10.1098/rsif.2017.0238 ]
    https://hal.archives-ouvertes.fr/hal-01570828
  • 34E. Tixier, F. Raphel, D. Lombardi, J.-F. Gerbeau.
    Composite biomarkers derived from Micro-Electrode Array measurements and computer simulations improve the classification of drug-induced channel block, in: Frontiers in Physiology, 2018, vol. 8, no 1096, pp. 1-30. [ DOI : 10.3389/fphys.2017.01096 ]
    https://hal.archives-ouvertes.fr/hal-01570819
  • 35W. Yang, F. L. Hanley, F. P. Chan, A. L. Marsden, I. E. Vignon-Clementel, J. A. Feinstein.
    Computational simulation of postoperative pulmonary flow distribution in Alagille patients with peripheral pulmonary artery stenosis, in: Congenital Heart Disease, 2017. [ DOI : 10.1111/chd.12556 ]
    https://hal.inria.fr/hal-01657634
  • 36Y. Yin, O. Sedlaczek, B. Müller, A. Warth, M. González-Vallinas, B. Lahrmann, N. Grabe, H.-U. Kauczor, K. Breuhahn, I. Vignon-Clementel, D. Drasdo.
    Tumor cell load and heterogeneity estimation from diffusion-weighted MRI calibrated with histological data: an example from lung cancer, in: IEEE Transactions on Medical Imaging, 2017. [ DOI : 10.1109/TMI.2017.2698525 ]
    https://hal.inria.fr/hal-01421398

International Conferences with Proceedings

  • 37E. Lluch, R. Doste, S. Giffard-Roisin, A. This, M. Sermesant, O. Camara, M. De Craene, H. G. Morales.
    Smoothed Particle Hydrodynamics for Electrophysiological Modeling: An Alternative to Finite Element Methods, in: Functional imaging and modelling of the heart 2017, Toronto, Canada, Functional imaging and modelling of the heart 2017 Proceedings, Springer International Publishing, June 2017, vol. 141, pp. 333-343. [ DOI : 10.1007/978-3-319-59448-4_32 ]
    https://hal.inria.fr/hal-01533371
  • 38A. A. This, L. Boilevin-Kayl, H. G. Morales, O. Bonnefous, P. A. Allain, M. A. Fernández, J.-F. Gerbeau.
    One Mesh To Rule Them All: Registration-Based Personalized Cardiac Flow Simulations, in: FIMH 2017 - 9th international conference on Functional Imaging and Modeling of the Heart, Toronto, Canada, LNCS - Lecture Notes in Computer Science, Springer, June 2017, vol. 10263.
    https://hal.inria.fr/hal-01512309

Conferences without Proceedings

  • 39L. Boilevin-Kayl, A. This, M. A. Fernández, J.-F. Gerbeau.
    An efficient valve model based on resistive immersed surfaces enhanced with physiological data, in: 5th International Conference on Computational & Mathematical Biomedical Engineering, Pittsburgh, United States, Etienne Boileau and David Nordsletten, April 2017.
    https://hal.inria.fr/hal-01519602

Scientific Books (or Scientific Book chapters)

  • 40D. Anne-Archard, R. Chatelin, M. Murris-Espin, D. Sanchez, M. Thiriet, A. Didier, P. Poncet.
    Modeling Cystic Fibrosis and Mucociliary Clearance, in: Modeling of microscale transport in biological processes, S. M. Becker (editor), Academic Press, 2017, pp. 113-154. [ DOI : 10.1016/B978-0-12-804595-4.00005-5 ]
    https://hal.inria.fr/hal-01476216

Internal Reports

  • 41A. Nicolopoulos, N. Riane, A. Saint-Dizier, L. Trussardi.
    Analyse d'images de pales d'éoliennes. Semaine d'étude maths-entreprises, Paris, 11-15 septembre 2017, AMIES, November 2017, pp. 1-18.
    https://hal.archives-ouvertes.fr/hal-01651796

Other Publications

  • 42A. Bakhta, D. Lombardi.
    An a posteriori error estimator based on shifts for positive hermitian eigenvalue problems, September 2017, working paper or preprint.
    https://hal.inria.fr/hal-01584180
  • 43C. Grandmont, M. Hillairet, J. Lequeurre.
    Existence of local strong solutions to fluid-beam and fluid-rod interaction systems , July 2017, working paper or preprint.
    https://hal.inria.fr/hal-01567661
  • 44N. Pozin, S. Montesantos, I. Katz, M. Pichelin, I. Vignon-Clementel, C. Grandmont.
    From dynamical lung ventilation data to plugs distribution in asthma – A numerical diagnosis tool, July 2017, working paper or preprint.
    https://hal.archives-ouvertes.fr/hal-01568065
References in notes
  • 45A. Amsden, P. O'Rourke, T. Butler.
    A computer program for chemically reactive flows with sprays, Los Alamos National Laboratory, 1989, no LA-11560-MS.
  • 46M. A. Biot.
    Theory of propagation of elastic waves in a fluid-saturated porous solid. II higher frequency range, in: J. Acoust. Soc. Am., 1956, vol. 28, pp. 179–191.
  • 47D. Chapelle, J. Sainte-Marie, J.-F. Gerbeau, I. Vignon-Clementel.
    A poroelastic model valid in large strains with applications to perfusion in cardiac modeling, in: Computational Mechanics, 2010, vol. 46, no 1, pp. 91-101. [ DOI : 10.1007/s00466-009-0452-x ]
  • 48R. Chatelin, D. Anne-Archard, M. Murris-Espin, M. Thiriet, P. Poncet.
    Numerical and experimental investigation of mucociliary clearance breakdown in cystic fibrosis, in: Journal of Biomechanics, 2017, 8 p. [ DOI : 10.1016/j.jbiomech.2016.12.026 ]
    https://hal.inria.fr/hal-01476172
  • 49J. Dupays, Y. Fabignon, P. Villedieu, G. Lavergne, G. Estivalezes.
    Some aspects of two phase flows in solid propellant rocket motors, in Solid propellant chemistry, combustion and interior ballistics, in: Progress in Astronautics and Aeronautics, V. Yang, T. Brill, W. Pen (editors), Academic Press, 2000, vol. 185.
  • 50G. Lines, P. Grottum, A. Tveito.
    Modeling the electrical activity of the heart. A bidomain model of the ventricles embedded in a torso, in: Comput. Visual. Sci., 2003, vol. 5, pp. 195-213.
  • 51O. Miraucourt, S. Salmon, M. Szopos, M. Thiriet.
    Blood flow in the cerebral venous system: modeling and simulation, in: Computer Methods in Biomechanics and Biomedical Engineering, 2016. [ DOI : 10.1080/10255842.2016.1247833 ]
    http://hal.upmc.fr/hal-01384285
  • 52R. Motte.
    A numerical method for solving particle-fluid equations, in: Trends in numerical and physical modeling for industrial multiphase flows, Cargèse, France, 2000.
  • 53A. Quarteroni, S. Ragni, A. Veneziani.
    Coupling between lumped and distributed models for blood flow problems, in: Comput. Visual Sci., 2001, vol. 4, pp. 111–124.
  • 54F. Sachse.
    Computational Cardiology: Modeling of Anatomy, Electrophysiology, and Mechanics, Springer-Verlag, 2004.
  • 55J. Sundnes, G. Lines, X. Cai, B. Nielsen, K.-A. Mardal, A. Tveito.
    Computing the electrical activity in the heart, Springer-Verlag, 2006.
  • 56K. Terzaghi.
    Theoretical Soil Mechanics, John Wiley and Sons, New-York, 1943.
  • 57F. Williams.
    Combustion theory, 2nd, Benjamin Cummings, 1985.

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