Bibliography

Major publications by the team in recent years

• 1N. Bajeux, F. Grognard, L. Mailleret.
  Augmentative biocontrol when natural enemies are subject to Allee effects, in: Journal of Mathematical Biology, 2017, vol. 74, n^o 7, pp. 1561 - 1587. [ DOI : 10.1007/s00285-016-1063-8 ]
  https://hal.archives-ouvertes.fr/hal-01402250
• 2C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.
  DRUM: A New Framework for Metabolic Modeling under Non-Balanced Growth. Application to the Carbon Metabolism of Unicellular Microalgae, in: PLoS ONE, August 2014, vol. 9, n^o 8, e104499. [ DOI : 10.1371/journal.pone.0104499 ]
  https://hal.inria.fr/hal-01097327
• 3O. Bernard.
  Hurdles and challenges for modelling and control of microalgae for CO2 mitigation and biofuel production, in: Journal of Process Control, 2011, vol. 21, n^o 10, pp. 1378–1389. [ DOI : 10.1016/j.jprocont.2011.07.012 ]
  http://hal.inria.fr/hal-00848385
• 4V. Calcagno, F. Grognard, F. M. Hamelin, E. Wajnberg, L. Mailleret.
  The functional response predicts the effect of resource distribution on the optimal movement rate of consumers, in: Ecology Letters, December 2014, vol. 17, n^o 12, pp. 1570-1579. [ DOI : 10.1111/ele.12379 ]
  https://hal.inria.fr/hal-01084299
• 5N. Giordano, F. Mairet, J.-L. Gouzé, J. Geiselmann, H. De Jong.
  Dynamical allocation of cellular resources as an optimal control problem: Novel insights into microbial growth strategies, in: PLoS Computational Biology, March 2016, vol. 12, n^o 3, e1004802 p. [ DOI : 10.1371/journal.pcbi.1004802 ]
  https://hal.inria.fr/hal-01332394
• 6N. Go, C. Bidot, C. Belloc, S. Touzeau.
  Integrative Model of the Immune Response to a Pulmonary Macrophage Infection: What Determines the Infection Duration?, in: PLoS ONE, September 2014, vol. 9, n^o 9, e107818. [ DOI : 10.1371/journal.pone.0107818 ]
  https://hal.inria.fr/hal-01099937
• 7F. Mairet, O. Bernard, P. Masci, T. Lacour, A. Sciandra.
  Modelling neutral lipid production by the microalga Isochrysis affinis galbana under nitrogen limitation, in: Biores. Technol., 2011, vol. 102, pp. 142-149.
  http://dx.doi.org/10.1016/j.biortech.2010.06.138
• 8M. Moisan, O. Bernard, J.-L. Gouzé.
  Near optimal interval observers bundle for uncertain bioreactors, in: Automatica, January 2009, vol. 45, n^o 1, pp. 291–295. [ DOI : 10.1016/j.automatica.2008.07.006 ]
  https://hal.archives-ouvertes.fr/hal-01109396
• 9C. Poignard, M. Chaves, J.-L. Gouzé.
  Periodic Oscillations for Non Monotonic Smooth Negative Feedback Circuits, in: SIAM Journal on Applied Dynamical Systems, 2016, vol. 15, n^o 1, pp. 257–286. [ DOI : 10.1137/15M1033368 ]
  https://hal.archives-ouvertes.fr/hal-01242157
• 10L. Tournier, M. Chaves.
  Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics, in: Automatica, 2013, vol. 49, n^o 4, pp. 884-893. [ DOI : 10.1016/j.automatica.2013.01.015, ]
  http://hal.inria.fr/hal-00848450

Publications of the year

Doctoral Dissertations and Habilitation Theses

• 11L. Mailleret.
  Modélisation et contrôle en dynamiques de populations. Applications en protection des plantes, Université Côte d'Azur, February 2018, Habilitation à diriger des recherches.
  https://hal.inria.fr/tel-01954099

Articles in International Peer-Reviewed Journals

• 12I. Belgacem, S. Casagranda, E. Grac, D. Ropers, J.-L. Gouzé.
  Reduction and stability analysis of a transcription-translation model of RNA polymerase, in: Bulletin of Mathematical Biology, 2018, vol. 80, n^o 2, pp. 294-318. [ DOI : 10.1007/s11538-017-0372-4 ]
  https://hal.inria.fr/hal-01655367
• 13P. Bernhard, M. Deschamps.
  Kalman 1960: The birth of modern system theory, in: Mathematical Population Studies, 2018.
  https://hal.inria.fr/hal-01940560
• 14C. Bresch, L. Carlesso, R. Suay, L. Van Oudenhove, S. Touzeau, H. Fatnassi, L. Ottenwaelder, B. Paris, C. Poncet, L. Mailleret, G. J. Messelink, P. Parolin.
  In search of artificial domatia for predatory mites, in: Biocontrol Science and Technology, October 2018, pp. 1-18. [ DOI : 10.1080/09583157.2018.1540030 ]
  https://hal.inria.fr/hal-01947693
• 15Q. Béchet, N. Coulombier, C. Vasseur, T. Lasserre, L. Le Dean, O. Bernard.
  Full-scale validation of an algal productivity model including nitrogen limitation, in: Algal Research - Biomass, Biofuels and Bioproducts, April 2018, vol. 31, pp. 377-386.
  https://hal.inria.fr/hal-01956288
• 16S. Casagranda, S. Touzeau, D. Ropers, J.-L. Gouzé.
  Principal process analysis of biological models, in: BMC Systems Biology, 2018, vol. 12, 68 p. [ DOI : 10.1186/s12918-018-0586-6 ]
  https://hal.inria.fr/hal-01818033
• 17M. Caïa, O. Bernard, Q. Béchet.
  Optimizing CO2 transfer in algal open ponds, in: Algal Research - Biomass, Biofuels and Bioproducts, November 2018, vol. 35, pp. 530-538.
  https://hal.inria.fr/hal-01949316
• 18M. Caïa, O. Bernard, J.-P. Steyer.
  Modelling an Artificial Microalgae-Cyanobacteria Ecosystem, in: IFAC-PapersOnLine, 2018, vol. 51, n^o 2, pp. 655 - 660. [ DOI : 10.1016/j.ifacol.2018.03.111 ]
  https://hal.sorbonne-universite.fr/hal-01833296
• 19M. Chaves, D. Figueiredo, M. A. Martins.
  Boolean dynamics revisited through feedback interconnections, in: Natural Computing, October 2018. [ DOI : 10.1007/s11047-018-9716-8 ]
  https://hal.archives-ouvertes.fr/hal-01936299
• 20M. Chaves, D. A. Oyarzun.
  Dynamics of complex feedback architectures in metabolic pathways, in: Automatica, January 2019, vol. 99, pp. 323 - 332. [ DOI : 10.1016/j.automatica.2018.10.046 ]
  https://hal.archives-ouvertes.fr/hal-01936242
• 21M. Chaves, D. A. Oyarzun, J.-L. Gouzé.
  Analysis of a genetic-metabolic oscillator with piecewise linear models, in: Journal of Theoretical Biology, February 2019, vol. 462, pp. 259 - 269. [ DOI : 10.1016/j.jtbi.2018.10.026 ]
  https://hal.archives-ouvertes.fr/hal-01936225
• 22M. Chaves, L. Tournier.
  Analysis Tools for Interconnected Boolean Networks With Biological Applications, in: Frontiers in Physiology, May 2018, vol. 9. [ DOI : 10.3389/fphys.2018.00586 ]
  https://hal.archives-ouvertes.fr/hal-01936199
• 23D. Demory, A.-C. Baudoux, A. Monier, N. Simon, C. Six, P. Ge, F. Rigaut-Jalabert, D. Marie, A. Sciandra, O. Bernard, S. Rabouille.
  Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean, in: The ISME journal, August 2018.
  https://hal.inria.fr/hal-01956290
• 24D. Demory, C. Combe, P. Hartmann, A. Talec, E. Pruvost, R. Hamouda, F. Souillé, P.-O. Lamare, M.-O. Bristeau, J. Sainte-Marie, S. Rabouille, F. Mairet, A. Sciandra, O. Bernard.
  How do microalgae perceive light in a high-rate pond? Towards more realistic Lagrangian experiments, in: Royal Society Open Science, May 2018, vol. 5, n^o 5, 180523 p. [ DOI : 10.1098/rsos.180523 ]
  https://hal.sorbonne-universite.fr/hal-01830067
• 25E. Desnoues, M. Génard, B. Quilot-Turion, V. Baldazzi.
  A kinetic model of sugar metabolism in peach fruit reveals a functional hypothesis of markedly low fructose-to-glucose ratio phenotype, in: The Plant Journal, May 2018, vol. 94, n^o 4, pp. 685-698.
  https://hal.inria.fr/hal-01953042
• 26N. Go, C. Belloc, C. Bidot, S. Touzeau.
  Why, when and how should exposure be considered at the within-host scale? A modelling contribution to PRRSv infection, in: Mathematical Medicine and Biology, May 2018. [ DOI : 10.1093/imammb/dqy005 ]
  https://hal.inria.fr/hal-01947667
• 27M. Haond, T. Morel-Journel, E. Lombaert, E. Vercken, L. Mailleret, L. Roques.
  When higher carrying capacities lead to faster propagation, in: PEER COMMUNITY IN ECOLOGY, September 2018.
  https://hal.inria.fr/hal-01883019
• 28T. Hoch, S. Touzeau, A.-F. Viet, P. Ezanno.
  Between-group pathogen transmission: From processes to modeling, in: Ecological Modelling, September 2018, vol. 383, pp. 138 - 149. [ DOI : 10.1016/j.ecolmodel.2018.05.016 ]
  https://hal.inria.fr/hal-01815766
• 29G. Koch, G. Rolland, M. Dauzat, A. Bediee, V. Baldazzi, N. Bertin, Y. Y. Guédon, C. Granier.
  Are compound leaves more complex than simple ones? A multi-scale analysis, in: Annals of Botany, June 2018.
  https://hal.inria.fr/hal-01953068
• 30C. López Zazueta, O. Bernard, J.-L. Gouzé.
  Analytical Reduction of Nonlinear Metabolic Networks Accounting for Dynamics in Enzymatic Reactions, in: Complexity, August 2018, vol. 2018, pp. 1 - 22. [ DOI : 10.1155/2018/2342650 ]
  https://hal.inria.fr/hal-01872615
• 31C. López Zazueta, O. Bernard, J.-L. Gouzé.
  Dynamical reduction of linearized metabolic networks through quasi steady state approximation, in: AIChE Journal, September 2018. [ DOI : 10.1002/aic.16406 ]
  https://hal.inria.fr/hal-01924343
• 32C. Martínez, O. Bernard, F. Mairet.
  Maximizing microalgae productivity in a light-limited chemostat, in: IFAC-PapersOnLine, 2018, vol. 51, n^o 2, pp. 735 - 740. [ DOI : 10.1016/j.ifacol.2018.04.001 ]
  https://hal.inria.fr/hal-01891634
• 33C. Martínez, F. Mairet, O. Bernard.
  Theory of turbid microalgae cultures, in: Journal of Theoretical Biology, November 2018, vol. 456, pp. 190 - 200. [ DOI : 10.1016/j.jtbi.2018.07.016 ]
  https://hal.inria.fr/hal-01891616
• 34T. Morel-Journel, M. Hautier, E. Vercken, L. Mailleret.
  Clustered or scattered? The impact of habitat fragmentation on establishment and early spread, in: Ecography, October 2018, vol. 41, n^o 10, pp. 1675-1683.
  https://hal.inria.fr/hal-01957107
• 35T. Morel-Journel, C. Rais Assa, L. Mailleret, E. Vercken.
  Its all about connections: hubs and invasion in habitat networks, in: Ecology Letters, December 2018.
  https://hal.inria.fr/hal-01957100
• 36C. Poignard, M. Chaves, J.-L. Gouzé.
  A Stability Result for Periodic Solutions of Nonmonotonic Smooth Negative Feedback Systems, in: SIAM Journal on Applied Dynamical Systems, April 2018, vol. 17, n^o 2, pp. 1091 - 1116. [ DOI : 10.1137/17M1141205 ]
  https://hal.inria.fr/hal-01872255
• 37E. E. Rousseau, L. Tamisier, F. Fabre, V. Simon, M. Szadkowski, O. Bouchez, C. Zanchetta, G. Girardot, L. Mailleret, F. Grognard, A. Palloix, B. Moury.
  Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants, in: Molecular Plant Pathology, December 2018, vol. 19, n^o 12, pp. 2575-2589.
  https://hal.inria.fr/hal-01953902
• 38J.-A. Sepulchre, S. Reverchon, J.-L. L. Gouzé, W. Nasser.
  Modeling the bioconversion of polysaccharides in a continuous reactor: A case study of the production of oligo-galacturonates by Dickeya dadantii, in: Journal of Biological Chemistry, December 2018, pp. 1-21. [ DOI : 10.1074/jbc.RA118.004615 ]
  https://hal.inria.fr/hal-01952846
• 39I. Yegorov, F. Mairet, H. De Jong, J.-L. Gouzé.
  Optimal control of bacterial growth for the maximization of metabolite production, in: Journal of Mathematical Biology, October 2018, pp. 1-48. [ DOI : 10.1007/s00285-018-1299-6 ]
  https://hal.inria.fr/hal-01929475
• 40I. Yegorov, F. Mairet, J.-L. Gouzé.
  Optimal feedback strategies for bacterial growth with degradation, recycling and effect of temperature, in: Optim. Control Appl. Meth., 2018, vol. 39. [ DOI : 10.1002/oca.2398 ]
  https://hal.inria.fr/hal-01655960

International Conferences with Proceedings

• 41O. Bara, H. Bonnefond, O. Bernard.
  Model Development and Light Effect on a Rotating Algal Biofilm, in: 12th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems. (Submitted), Florianópolis - SC, Brazil, April 2019.
  https://hal.inria.fr/hal-01891661
• 42W. Djema, L. Giraldi, O. Bernard.
  An Optimal Control Strategy Separating Two Species of Microalgae in Photobioreactors, in: DYCOPS 2019 - 12th Dynamics and Control of Process Systems, including Biosystems, Florianopolis, Brazil, April 2019.
  https://hal.inria.fr/hal-01891910
• 43W. Djema, F. Mazenc, C. Bonnet, J. Clairambault, E. Fridman.
  Stability Analysis of a Nonlinear System with Infinite Distributed Delays Describing Cell Dynamics, in: IEEE American Control Conference (ACC 2018), Milwaukee, United States, June 2018. [ DOI : 10.23919/acc.2018.8430869 ]
  https://hal.inria.fr/hal-01849010
• 44Y. Fotso Fotso, F. Grognard, B. Tsanou, S. Touzeau.
  Modelling and control of coffee berry borer infestation, in: CARI’2018 - 14. Colloque Africain sur la Recherche en Informatique et en Mathématiques Appliquées, Stellenbosch, South Africa, October 2018.
  https://hal.inria.fr/hal-01871508
• 45E. Stahl, A. G. Yabo, O. Richard, B. Bzeznik, B. Robu, E. Rutten.
  Towards a control-theory approach for minimizing unused grid resources, in: AI-Science'18 - workshop on Autonomous Infrastructure for Science, in conjunction with the ACM HPDC 2018, Tempe, AZ, United States, June 2018, pp. 1-8. [ DOI : 10.1145/3217197.3217201 ]
  https://hal.archives-ouvertes.fr/hal-01823787
• 46I. Tankam Chedjou, S. Touzeau, F. Grognard, L. Mailleret, J.-J. Tewa.
  A multi-seasonal model of the dynamics of banana plant-parasitic nematodes, in: CARI’2018 - 14. Colloque Africain sur la Recherche en Informatique et en Mathématiques Appliquées, Stellenbosch, South Africa, October 2018.
  https://hal.inria.fr/hal-01871510

Conferences without Proceedings

• 47V. Baldazzi.
  Unravelling the contribution of cell cycle and cell expansion in an integrated model of tomato fruit development, in: ECMTB 2018 - European Conference on Mathematical and Theoretical Biology, Lisbon, Portugal, July 2018.
  https://hal.inria.fr/hal-01953140
• 48L. Chambon, J.-L. Gouzé.
  Qualitative control for a genetic negative feedback loop, in: 11th European Conference on Mathematical and Theoretical Biology (ECMTB 2018), Lisbon, Portugal, July 2018.
  https://hal.archives-ouvertes.fr/hal-01952602
• 49Y. Fotso Fotso, S. Touzeau, S. Bowong, F. Grognard, L. Mailleret, B. Tsanou.
  Modelling and control of coffee berry borer infestation, in: 11th European Conference on Mathematical and Theoretical Biology (ECMTB), Lisbon, Portugal, July 2018.
  https://hal.inria.fr/hal-01859994
• 50F. Grognard, I. Yegorov, J. Guegan, L. Mailleret, F. Halkett, P. Bernhard.
  Uninvadable strategies for biotrophic pathogens, from dynamic games to adaptive dynamics, in: 11th European Conference on Mathematical and Theoretical Biology (ECMTB), Lisbon, Portugal, July 2018.
  https://hal.inria.fr/hal-01940820
• 51F. M. Hamelin, C. Pauline, V. Florence, F. Grognard.
  Gene-for-gene epidemic models, systemic acquired resistance, and the evolution of plant parasites, in: 11th European Conference on Mathematical and Theoretical Biology (ECMTB), Lisbon, Portugal, July 2018.
  https://hal.inria.fr/hal-01955069
• 52F. M. Hamelin, C. Pauline, V. Florence, F. Grognard.
  Gene-for-gene epidemic models, systemic acquired resistance, and the evolution of plant parasites, in: MB 2 3rd Mathematical Biology Modelling Days of Besançon, Besançon, France, June 2018.
  https://hal.inria.fr/hal-01955058
• 53P.-O. Lamare, J. Auriol, F. Di Meglio, U. J. F. Aarsnes.
  Robust output regulation of 2 x 2 hyperbolic systems: Control law and Input-to-State Stability, in: American and Control Conference, Milwaukee, United States, 2018, https://arxiv.org/abs/1710.07017.
  https://hal.archives-ouvertes.fr/hal-01499686
• 54C. López Zazueta, O. Bernard, J.-L. Gouzé.
  Reduction of Metabolic Networks keeping Core Dynamics, in: 11th European Conference on Mathematical and Theoretical Biology (ECMTB 2018), Lisbon, Portugal, July 2018.
  https://hal.archives-ouvertes.fr/hal-01952638
• 55C. López Zazueta, O. Bernard, J.-L. Gouzé.
  Reduction of Metabolic Networks keeping Dynamics, in: MATHMOD 2018 - 9th Vienna International Conference on Mathematical Modelling, Vienne, Austria, February 2018.
  https://hal.inria.fr/hal-01952668
• 56S. Nilusmas, S. Touzeau, V. Calcagno, C. Djian-Caporalino, P. Castagnone-Sereno, L. Mailleret.
  Sustainable management of root-knot nematodes in horticultural crops by modeling and optimizing resistance gene deployment, in: 11th European Conference on Mathematical and Theoretical Biology (ECMTB), Lisbon, Portugal, July 2018.
  https://hal.inria.fr/hal-01859991
• 57L. Pereira, P. Hofman, J.-L. Gouzé, M. Chaves, J. Roux.
  Modelling cell-death drug response heterogeneity at the receptor layer, in: 11th European Conference on Mathematical and Theoretical Biology (ECMTB 2018), Lisbon, Portugal, July 2018.
  https://hal.archives-ouvertes.fr/hal-01936435
• 58I. Tankam Chedjou, S. Touzeau, F. Grognard, L. Mailleret, J.-J. Tewa.
  An agricultural control of Radopholus similis in banana plantations, in: 11th European Conference on Mathematical and Theoretical Biology (ECMTB), Lisbon, Portugal, July 2018.
  https://hal.inria.fr/hal-01859995
• 59S. Touzeau, N. Go, C. Belloc, A. Doeschl-Wilson.
  Investigating viremia rebounds using a PRSS data-supported model of immune response, in: 11th European Conference on Mathematical and Theoretical Biology (ECMTB), Lisbon, Portugal, July 2018.
  https://hal.inria.fr/hal-01859985

Scientific Books (or Scientific Book chapters)

• 60P. Bernhard, M. Deschamps.
  Arrow’s (im)possibility theorem, in: Encyclopedia of Law and Economics, 2018.
  https://hal.inria.fr/hal-01941037
• 61P. Bernhard, M. Deschamps.
  Gibbard-Satterthwaite Theorem, in: Encyclopedia of Law and Economics, Springer New York, August 2018, pp. 1-7.
  https://hal.inria.fr/hal-01940545
• 62M. Morales, P. Collet, L. Lardon, A. Hélias, J.-P. Steyer, O. Bernard.
  Life-Cycle Assessment of Microalgal-Based Biofuels, in: Biomass, Biofuels and Biochemicals, Elsevier, 2018, pp. 507-550.
  https://hal.inria.fr/hal-01956296

Scientific Popularization

• 63T. Malausa, E. Joly, B. Frerot, F. Marion-Poll, D. Thiery, J.-C. Martin, A. Levevre, M. Navajas, E. Tabone, J.-Y. Rasplus, N. Ris, J.-C. Ogier, S. Pagès, A. Givaudan, S. Gaudriault, J.-L. Gatti, C. Lavigne, J.-C. Bouvier, L. Mailleret, E. Vercken, E. Klein, L. Roques, N. Desneux, C. Poncet, M. Bardin, P. Nicot, M. Ponchet, E. Galiana, M.-N. Brisset (editors)
  Les conquêtes de l’INRA pour le biocontrôle, INRA Sciences & Impact, 2018, 32 p.
  https://hal.archives-ouvertes.fr/hal-01963048
• 64E. Desnoues, M. Génard, B. Quilot-Turion, V. Baldazzi.
  Explore the best sugar factory: the fruit, August 2018.
  https://hal.inria.fr/hal-01953091

Other Publications

• 65V. Baldazzi, P. Valsesia, M. Génard, N. Bertin.
  Organ-wide and ploidy-dependent regulations both contribute to cell size determination: evidence from a computational model of tomato fruit, December 2018, working paper or preprint.
  https://hal.inria.fr/hal-01953178
• 66V. Calcagno, F. Hamelin, L. Mailleret, F. Grognard.
  How optimal foragers should respond to habitat changes? On the consequences of habitat conversion, December 2018, A preprint peer-reviewed and recommended by Peer Community In Ecology: https://doi.org/10.1101/273557.
  https://hal.inria.fr/hal-01954274
• 67L. Mailleret, D. Davtian, F. Grognard.
  An individual based model to optimize natural enemies deployment in augmentative biological control. , July 2018, 11th European Conference on Mathematical and Theoretical Biology (ECMTB), Poster.
  https://hal.inria.fr/hal-01861120
• 68L. Mailleret, D. Davtian, F. Grognard.
  An individual based model to optimize natural enemies deployment in augmentative biological control. , October 2018, SFECOLOGY 2018 - International Conference on Ecological Sciences, Poster.
  https://hal.inria.fr/hal-01861133
• 69C. Martínez, F. Mairet, P. Martinon, O. Bernard.
  Dynamics and control of a periodically forced microalgae culture, October 2018, working paper or preprint.
  https://hal.inria.fr/hal-01891648

References in notes

• 70J. Arino, N. Bajeux, S. Kirkland.
  Number of source patches required for population persistence in a source-sink metapopulation, 2019.
• 71N. Bajeux.
  Modelling populations introduction strategies, Allee effects and stochasticity, Université Côte d'Azur, July 2017.
  https://tel.archives-ouvertes.fr/tel-01865809
• 72N. Bajeux, Frédéric. Grognard, L. Mailleret.
  Influence of the components of propagule pressure, Allee effects, and stochasticity on the time to establish introduced populations, 2019, submitted.
• 73C. Baroukh, R. Muñoz-Tamayo, O. A. Bernard, J.-P. Steyer.
  Reply to the Comment on “Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production” by Baroukh et al. [Curr. Opin. Biotechnol. 2015, 33:198–205], in: Current Opinion in Biotechnology, March 2016, vol. 38, pp. 200 - 202. [ DOI : 10.1016/j.copbio.2016.02.018 ]
  https://hal.inria.fr/hal-01410975
• 74C. Baroukh, R. Muñoz-Tamayo, O. Bernard, J.-P. Steyer.
  Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production, in: Current Opinion in Biotechnology, 2015, vol. 33, pp. 198-205. [ DOI : 10.1016/j.copbio.2015.03.002 ]
  https://hal.archives-ouvertes.fr/hal-01163456
• 75O. Bernard, A.-C. Boulanger, M.-O. Bristeau, J. Sainte-Marie.
  A 2D model for hydrodynamics and biology coupling applied to algae growth simulations, in: ESAIM: Mathematical Modelling and Numerical Analysis, September 2013, vol. 47, n^o 5, pp. 1387-1412. [ DOI : 10.1051/m2an/2013072 ]
  https://hal.archives-ouvertes.fr/hal-00936859
• 76O. Bernard, F. Mairet, B. Chachuat.
  Modelling of Microalgae Culture Systems with Applications to Control and Optimization, in: Advances in Biochemical Engineering/Biotechnology, 2015. [ DOI : 10.1007/10_2014_287 ]
  https://hal.inria.fr/hal-01245875
• 77T. Brenière.
  Physiologie de la plante attaqué par les nématodes: Modélisation et expérimentation, INSA Lyon, 2018.
• 78M. Chaves, A. Carta.
  Attractor computation using interconnected Boolean networks: testing growth rate models in E. Coli, in: Theoretical Computer Science, 2014, 17 p. [ DOI : 10.1016/j.tcs.2014.06.021 ]
  https://hal.inria.fr/hal-01095196
• 79D. Demory, L. Arsenieff, N. Simon, C. Six, F. Rigaut-Jalabert, D. Marie, P. Ge, E. Bigeard, S. Jacquet, A. Sciandra, O. Bernard, S. Rabouille, A.-C. Baudoux.
  Temperature is a key factor in Micromonas-virus interactions, in: ISME Journal, 2017, vol. 11, pp. 601-612. [ DOI : 10.1038/ismej.2016.160 ]
  https://hal.sorbonne-universite.fr/hal-01464528
• 80N. Giordano, F. Mairet, J.-L. Gouzé, J. Geiselmann, H. De Jong.
  Dynamical allocation of cellular resources as an optimal control problem: Novel insights into microbial growth strategies, in: PLoS Computational Biology, March 2016, vol. 12, n^o 3, e1004802 p. [ DOI : 10.1371/journal.pcbi.1004802 ]
  https://hal.inria.fr/hal-01332394
• 81J.-L. Gouzé, A. Rapaport, Z. Hadj-Sadok.
  Interval observers for uncertain biological systems, in: Ecological modelling, 2000, vol. 133, pp. 45-56.
  http://dx.doi.org/10.1016/S0304-3800(00)00279-9
• 82G. M. Grimaud, F. Mairet, A. Sciandra, O. Bernard.
  Modeling the temperature effect on the specific growth rate of phytoplankton: a review, in: Reviews in Environmental Science and Biotechnology, August 2017.
  https://hal.inria.fr/hal-01576871
• 83L. Lardon, A. Hélias, B. Sialve, J.-P. Steyer, O. Bernard.
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