Section: Dissemination
Teaching - Supervision - Juries
Teaching
Four members of the IBIS team are either full professor or associate professor at Univ Grenoble Alpes. They therefore have a full teaching service (at least 192 hours per year) and administrative duties related to the organization and evaluation of the university course programs on all levels (from BSc to PhD). Besides the full-time academic staff in IBIS, the following people have contributed to courses last year.
Eugenio Cinquemani
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Course: Stochastic modelling of gene regulatory networks, M2, BIM, INSA de Lyon (4 h)
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Course: Statistics for systems biology, M1, Master Approches Interdisciplinaires du Vivant, CRI/Univ Paris Descartes (20 h, also in charge of 20 h of practicals)
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Course: Modelling and identification of metabolic networks, M1, Phelma, INP Grenoble (4 h)
Hidde de Jong
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Course and practicals: Modeling and simulation of gene regulatory networks, M2, BIM, INSA de Lyon (20 h)
Aline Marguet
Delphine Ropers
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Course and practicals: Modelling in systems biology, M1, Phelma, INP Grenoble (16 h)
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Course and practicals: Cell systems biology and modelling cell functions, M1, Master ingéniérie de la santé, Univ Grenoble Alpes (14 h)
Thibault Etienne
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Course: Construction et analyse de plasmides in silico, M1, Master ingéniérie de la santé, Univ Grenoble Alpes (4 h)
Antrea Pavlou
Supervision
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HdR: Eugenio Cinquemani, Identification, estimation and control of gene expression and metabolic network dynamics [14], Univ Grenoble Alpes, Nov 2019
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PhD in progress: Thibault Etienne, Analyse intégrative de la coordination entre stabilité des ARNm et physiologie cellulaire chez Escherichia coli. Supervisors: Delphine Ropers and Muriel Cocaign-Bousquet (INRA Toulouse)
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PhD in progress: Joël Espel, RNA engineering: Design of the dynamical folding of RNA and of RNA switches. Supervisors: Alexandre Dawid (Univ Grenoble Alpes) and Johannes Geiselmann
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PhD in progress: Antrea Pavlou, Experimental and computational analysis of bacterial self-replicators. Supervisors: Hidde de Jong and Johannes Geiselmann
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PhD in progress: Maaike Sangster, Development, characterization and control of E. coli communities on an automated experimental platform. Supervisors: Eugenio Cinquemani and Johannes Geiselmann
Juries
PhD thesis committees
IBIS member | Role | PhD student | University | Date |
Johannes Geiselmann | Président | Vanni Petrolli | Univ Grenoble Alpes | Nov 2019 |
Hidde de Jong | Rapporteur | Pauline Trébulle | AgroParisTech | Oct 2019 |
Hidde de Jong | Rapporteur | Firas Hammami | Univ d’Aix-Marseille | Dec 2019 |
Delphine Ropers | Examinateur | Marianyela Petrizzelli | Univ Paris Sud | Jul 2019 |
Delphine Ropers | Examinateur | Ronan Duchesne | Univ de Lyon | Dec 2019 |
Habilitation (HDR) committees
IBIS member | Role | HDR candidate | University | Date |
Johannes Geiselmann | Président | Marianne Weidenhaupt | Univ Grenoble Alpes | Jan 2019 |
Hidde de Jong | Président | Arnaud Tonnelier | Univ Grenoble Alpes | Jun 2019 |
Hidde de Jong | Rapporteur | Stefan Müller | University of Vienna | Sep 2019 |
Hidde de Jong | Examinateur | Eugenio Cinquemani | Univ Grenoble Alpes | Nov 2019 |
PhD advisory committees
IBIS member | PhD student | University |
Eugenio Cinquemani | Arthur Carcano | Institut Pasteur/Inria |
Eugenio Cinquemani | Alexey Koshkin | ENS de Lyon |
Johannes Geiselmann | Alain Lombard | Univ Grenoble Alpes |
Johannes Geiselmann | Shiny Martis | INSA de Lyon |
Hidde de Jong | Charlotte Coton | INRA Moulon |
Hidde de Jong | Kapil Newar | Univ Grenoble Alpes |
Hidde de Jong | Agustín Yabo | Univ Nice–Sophia-Antipolis |
Stéphan Lacour | Julien Trouillon | CEA Grenoble |
Stéphan Lacour | Camille Brunet | CHU Grenoble |
Stéphan Lacour | Raphael Fourquet | INSA de Lyon/Univ de Lyon |
Stéphan Lacour | Kevin Pick | Univ de Lyon |
Delphine Ropers | Manon Barthe | Univ Paul Sabatier, Toulouse |
Delphine Ropers | Charlotte Roux | Univ Paul Sabatier, Toulouse |
Delphine Ropers | Irene Ziska | Univ de Lyon |
Teaching administration
Yves Markowicz is director of the BSc department at Univ Grenoble Alpes.
Michel Page is coordinator of the master Systèmes d'information et d'organisation at the Institut d'Adminstration des Entreprises (IAE), Univ Grenoble Alpes.
Eugenio Cinquemani organizes a module on statistics in systems biology at CRI/Univ Paris Descartes.
Delphine Ropers organizes a module on the mathematical modeling of biological systems at PHELMA, INP Grenoble.
Hidde de Jong organizes with Daniel Kahn a module on the modeling of genetic and metabolic networks at INSA de Lyon.