Project-Team Reo
Members
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
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Bibliography

Major publications by the team in recent years
  • 1L. Boudin, L. Desvillettes, R. Motte.
    A modeling of compressible droplets in a fluid, in: Commun. Math. Sci., 2003, vol. 1, no 4, pp. 657–669.
  • 2M. Boulakia, S. Cazeau, M. A. Fernández, J.-F. Gerbeau, N. Zemzemi.
    Mathematical Modeling of Electrocardiograms: A Numerical Study, in: Annals of Biomedical Engineering, 2010, vol. 38, no 3, pp. 1071–1097.
  • 3M. Boulakia, S. Guerrero.
    Regular solutions of a problem coupling a compressible fluid and an elastic structure, in: Journal de Mathématiques Pures et Appliquées, 2010, vol. 94, no 4, pp. 341–365.
  • 4P. Causin, J.-F. Gerbeau, F. Nobile.
    Added-mass effect in the design of partitioned algorithms for fluid-structure problems, in: Comp. Meth. Appl. Mech. Engng., 2005, vol. 194, no 42–44, pp. 4506–4527.
  • 5J.-J. Christophe, T. Ishikawa, N. Matsuki, Y. Imai, K. Takase, M. Thiriet, T. Yamaguchi.
    Patient-specific morphological and blood flow analysis of pulmonary artery in the case of severe deformations of the lung due to pneumothorax, in: Journal of Biomechanical Science and Engineering, 2010, vol. 5, no 5, pp. 485–498.
  • 6M. A. Fernández, J.-F. Gerbeau, C. Grandmont.
    A projection semi-implicit scheme for the coupling of an elastic structure with an incompressible fluid, in: Internat. J. Numer. Methods Engrg., 2007, vol. 69, no 4, pp. 794–821.
  • 7M. A. Fernández, J. Mullaert, M. Vidrascu.
    Explicit Robin-Neumann schemes for the coupling of incompressible fluids with thin-walled structures, in: Comput. Methods Appl. Mech. Engrg., 2013, vol. 267, pp. 566–593.
  • 8C. Fetita, S. Mancini, D. Perchet, F. Prêteux, M. Thiriet, L. Vial.
    Computational model of oscillatory flow in the proximal part of tracheobronchial trees, in: Computer Methods in Biomechanics and Biomedical Engineering, 2005, vol. 8, pp. 279–293.
  • 9C. Grandmont.
    Existence of weak solutions for the unsteady interaction of a viscous fluid with an elastic plate, in: SIAM J. Math. Anal., 2008, vol. 40, no 2, pp. 716–737.
  • 10P. Moireau, C. Bertoglio, N. Xiao, C. A. Figueroa, C. A. Taylor, D. Chapelle, J.-F. Gerbeau.
    Sequential identification of boundary support parameters in a fluid-structure vascular model using patient image data, in: Biomechanics and Modeling in Mechanobiology, 2012, vol. 12, no 3, pp. 475–496.
  • 11M. Thiriet.
    Biology and Mechanics of Blood Flows, part I: Biology of Blood Flows (652 p.), part II: Mechanics and Medical Aspects of Blood Flows (464 p.), CRM Series in Mathematical Physics, Springer, 2008.
  • 12I. Vignon-Clementel, C. A. Figueroa, K. E. Jansen, C. A. Taylor.
    Outflow Boundary Conditions for Three-dimensional Finite Element Modeling of Blood Flow and Pressure in Arteries, in: Computer Methods in Applied Mechanics and Engineering, 2006, vol. 195, pp. 3776–3796.
Publications of the year

Doctoral Dissertations and Habilitation Theses

Articles in International Peer-Reviewed Journals

  • 14F. Alauzet, B. Fabrèges, M. A. Fernández, M. Landajuela.
    Nitsche-XFEM for the coupling of an incompressible fluid with immersed thin-walled structures, in: Computer Methods in Applied Mechanics and Engineering, January 2016, vol. 301, pp. 300-335. [ DOI : 10.1016/j.cma.2015.12.015 ]
    https://hal.inria.fr/hal-01149225
  • 15M. Aletti, J.-F. Gerbeau, D. Lombardi.
    Modeling autoregulation in three-dimensional simulations of retinal hemodynamics, in: Journal for Modeling in Ophthalmology, December 2015, vol. 1.
    https://hal.inria.fr/hal-01242748
  • 16G. Arbia, C. Corsini, C. Baker, G. Pennati, T.-Y. Hsia, I. Vignon-Clementel.
    Pulmonary hemodynamics simulations before stage 2 single ventricle surgery: patient-specific parameter identification and clinical data assessment, in: Cardiovascular Engineering and Technolodgy, 2015, 18 p. [ DOI : 10.1007/s13239-015-0212-3 ]
    https://hal.inria.fr/hal-01063967
  • 17L. Boudin, C. Grandmont, A. Lorz, A. Moussa.
    Modelling and numerics for respiratory aerosols, in: Communications in Computational Physics, September 2015, vol. 18, no 3, pp. 723-756. [ DOI : 10.4208/cicp.180714.200415a ]
    https://hal.archives-ouvertes.fr/hal-01044590
  • 18L. Boudin, B. Grec, F. Salvarani.
    The Maxwell-Stefan diffusion limit for a kinetic model of mixtures, in: Acta Applicandae Mathematicae, 2015, vol. 136, no 1, pp. 79-90. [ DOI : 10.1007/s10440-014-9886-z ]
    https://hal.archives-ouvertes.fr/hal-00554744
  • 19L. Boudin, F. Salvarani.
    Opinion dynamics: kinetic modelling with mass media, application to the Scottish independence referendum, in: Physica A, 2016, vol. 444, pp. 448-457. [ DOI : 10.1016/j.physa.2015.10.014 ]
    https://hal.archives-ouvertes.fr/hal-01114091
  • 20M. Boulakia.
    Quantification of the unique continuation property for the nonstationary Stokes problem, in: Mathematical Control and Related Fields, March 2016.
    https://hal.inria.fr/hal-01094490
  • 21A. Caiazzo, R. Guibert, Y. Boudjemline, I. E. Vignon-Clementel.
    Blood Flow Simulations for the Design of Stented Valve Reducer in Enlarged Ventricular Outflow Tracts, in: Cardiovascular Engineering and Technolodgy, November 2015, vol. 6, no 4, pp. 485-500. [ DOI : 10.1007/s13239-015-0240-z ]
    https://hal.inria.fr/hal-01244447
  • 22P. Cazeaux, C. Grandmont.
    Homogenization of a Multiscale Viscoelastic Model with Nonlocal Damping, Application to the Human Lungs, in: Math. Mod. Meth. Appl. Sci. (M3AS), February 2015, vol. 25, no 6. [ DOI : 10.1142/S0218202515500293 ]
    https://hal.inria.fr/hal-00873549
  • 23P. Cazeaux, C. Grandmont, Y. Maday.
    Homogenization of a model for the propagation of sound in the lungs, in: Multiscale Modeling and Simulation: A SIAM Interdisciplinary Journal, January 2015, vol. 13, no 1. [ DOI : 10.1137/130916576 ]
    http://hal.upmc.fr/hal-00764982
  • 24C. Corrado, J.-F. Gerbeau, P. Moireau.
    Identification of weakly coupled multiphysics problems. Application to the inverse problem of electrocardiography, in: Journal of Computational Physics, February 2015, vol. 283, pp. 271–298. [ DOI : 10.1016/j.jcp.2014.11.041 ]
    https://hal.inria.fr/hal-01091751
  • 25M. De Buhan, A. Gloria, P. Le Tallec, M. Vidrascu.
    Reconstruction of a constitutive law for rubber from in silico experiments using Ogden's laws, in: International Journal of Solids and Structures, 2015, 16 p. [ DOI : 10.1016/j.ijsolstr.2015.02.026 ]
    https://hal.inria.fr/hal-00933240
  • 26Y. Deleuze, M. Thiriet, T. W. Sheu.
    Modeling and simulation of local physical stress on the mastocytes created by the needle manipulation during acupuncture, in: Communications in Computational Physics, October 2015, vol. 18, no 4, pp. 850-867. [ DOI : 10.4208/cicp.101214.240515s ]
    http://hal.upmc.fr/hal-01240289
  • 27C. Dupont, A.-V. Salsac, D. Barthes-Biesel, M. Vidrascu, P. Le Tallec.
    Influence of bending resistance on the dynamics of a spherical capsule in shear flow, in: Physics of Fluids, 2015, vol. 27, 17 p. [ DOI : 10.1063/1.4921247 ]
    https://hal.inria.fr/hal-01160157
  • 28M. A. Fernández, M. Landajuela.
    Splitting schemes for incompressible fluid/thin-walled structure interaction with unfitted meshes, in: Comptes Rendus Mathématique, April 2015, vol. 353, pp. 647-652. [ DOI : 10.1016/j.crma.2015.04.003 ]
    https://hal.inria.fr/hal-01095634
  • 29M. A. Fernández, M. Landajuela, M. Vidrascu.
    Fully decoupled time-marching schemes for incompressible fluid/thin-walled structure interaction, in: Journal of Computational Physics, May 2015, vol. 297, pp. 156-181. [ DOI : 10.1016/j.jcp.2015.05.009 ]
    https://hal.inria.fr/hal-00918498
  • 30M. A. Fernández, J. Mullaert.
    Convergence and error analysis for a class of splitting schemes in incompressible fluid-structure interaction, in: IMA Journal of Numerical Analysis, October 2015. [ DOI : 10.1093/imanum/drv055 ]
    https://hal.inria.fr/hal-01102975
  • 31M. A. Fernández, J. Mullaert, M. Vidrascu.
    Generalized Robin-Neumann explicit coupling schemes for incompressible fluid-structure interaction: stability analysis and numerics, in: International Journal for Numerical Methods in Engineering, January 2015, vol. 101, no 3, pp. 199-229. [ DOI : 10.1002/nme.4785 ]
    https://hal.inria.fr/hal-00875819
  • 32J.-F. Gerbeau, D. Lombardi, E. Schenone.
    Reduced order model in cardiac electrophysiology with approximated Lax pairs, in: Advances in Computational Mathematics, 2015. [ DOI : 10.1007/s10444-014-9393-9 ]
    https://hal.archives-ouvertes.fr/hal-01238830
  • 33C. Grandmont, M. Hillairet.
    Existence of global strong solutions to a beam-fluid interaction system, in: Archive for Rational Mechanics and Analysis, 2016. [ DOI : 10.1007/s00205-015-0954-y ]
    https://hal.inria.fr/hal-01138736
  • 34N. Jagiella, B. Müller, M. Müller, I. Vignon-Clementel, D. Drasdo.
    Inferring growth control mechanisms in growing multi-cellular spheroids of NSCLC cells from spatial-temporal image data, in: PLoS Computational Biology, 2016.
    https://hal.inria.fr/hal-01244593
  • 35J. M. Oakes, P. Hofemeier, I. Vignon-Clementel, J. Sznitman.
    Aerosols in Healthy and Emphysematous In Silico Pulmonary Acinar Rat Models, in: Journal of Biomechanics, 2016. [ DOI : 10.1016/j.jbiomech.2015.11.026 ]
    https://hal.inria.fr/hal-01244458
  • 36J. M. Oakes, A. Marsden, C. Grandmont, C. Darquenne, I. E. Vignon-Clementel.
    Distribution of Aerosolized Particles in Healthy and Emphysematous Rat Lungs: Comparison Between Experimental and Numerical Studies, in: Journal of Biomechanics, April 2015, vol. 48, no 6, pp. 1147-57. [ DOI : 10.1016/j.jbiomech.2015.01.004i ]
    https://hal.inria.fr/hal-01244416
  • 37S. Pant, C. Corsini, C. Baker, T.-Y. Hsia, G. Pennati, I. E. Vignon-Clementel.
    Data assimilation and modelling of patient-specific single-ventricle physiology with and without valve regurgitation, in: Journal of Biomechanics, November 2015. [ DOI : 10.1016/j.jbiomech.2015.11.030 ]
    https://hal.inria.fr/hal-01240146
  • 38S. Pant, D. Lombardi.
    An information-theoretic approach to assess practical identifiability of parametric dynamical systems, in: Mathematical Biosciences, September 2015, pp. 66-79. [ DOI : 10.1016/j.mbs.2015.08.005 ]
    https://hal.inria.fr/hal-01099901
  • 39D. E. Schiavazzi, G. Arbia, C. Baker, A. M. Hlavacek, T.-Y. Hsia, A. L. Marsden, I. Vignon-Clementel.
    Uncertainty quantification in virtual surgery hemodynamics predictions for single ventricle palliation, in: International Journal for Numerical Methods in Biomedical Engineering, July 2015.
    https://hal.inria.fr/hal-01244427
  • 40M. Thiriet, Y. Deleuze, T. W. Sheu.
    A Biological Model of Acupuncture and its Derived Mathematical Modeling and Simulations, in: Communications in Computational Physics, October 2015, vol. 18, no 4, pp. 831-849. [ DOI : 10.4208/cicp.121214.250515s ]
    http://hal.upmc.fr/hal-01240291

Invited Conferences

  • 41M. A. Fernández, M. Landajuela, J. Mullaert, M. Vidrascu.
    Robin-Neumann schemes for incompressible fluid-structure interaction, in: Domain Decomposition Methods in Science and Engineering XXII, Lugano, Switzerland, R. Krause, M. Gander, T. Dickopf, L. Pavarino, L. Halpern (editors), Lecture Notes in Computer Science (LNCS), Springer, 2015.
    https://hal.inria.fr/hal-01113088
  • 42J. M. Oakes, S. C. Shadden, C. Grandmont, I. Vignon-Clementel.
    Aerosols in the lung: multi-domain transport and coupling, in: 4th International Conference on Computational and Mathematical Biomedical Engineering - CMBE2015, Cachan, France, June 2015.
    https://hal.inria.fr/hal-01244582

Conferences without Proceedings

  • 43E. Abbate, N. Zemzemi, Y. Coudière, J.-F. Gerbeau.
    In silico assessment of drugs effects on human embryonic stem cells derived cardiomyocytes electrical activity, in: LACM 2015 (2nd International Workshop on Latest Advances in Cardiac Modeling), German Heart Center, Munich, Germany, March 2015.
    https://hal.inria.fr/hal-01202019
  • 44C. Audebert, P. Bucur, E. Vibert, J.-F. Gerbeau, I. Vignon-Clementel.
    Closed-loop cardiovascular system model and partial hepatectomy simulation, in: 4th International Conference on Computational and Mathematical Biomedical Engineering - CMBE2015, Cachan, France, June 2015.
    https://hal.archives-ouvertes.fr/hal-01240144

Scientific Books (or Scientific Book chapters)

  • 45C. Dupont, P. Le Tallec, D. Barthes-Biesel, M. Vidrascu, A.-V. Salsac.
    Dynamics of a spherical capsule in a planar hyperbolic flow: influence of bending resistance, Procedia IUTAM Volume 16, Pages 1-134 (2015) IUTAM Symposium on Dynamics of Capsules, Vesicles and Cells in Flow (15-19 July 2014; Compiègne, France), Elsevier, 2015, vol. 16. [ DOI : 10.1016/j.piutam.2015.03.009 ]
    https://hal.inria.fr/hal-01166967
  • 46M. Thiriet, M. Delfour, A. Garon.
    Vascular Stenosis, in: PanVascular Medicine, P. Lanzer (editor), Springer, January 2015, pp. 781-868. [ DOI : 10.1007/978-3-642-37078-6_32 ]
    https://hal.archives-ouvertes.fr/hal-01125625
  • 47M. Thiriet.
    Cardiac Pump: An Introduction, in: PanVascular Medicine, P. Lanzer (editor), Springer, January 2015, pp. 345-412. [ DOI : 10.1007/978-3-642-37078-6_25 ]
    https://hal.archives-ouvertes.fr/hal-01124446
  • 48M. Thiriet.
    Hemodynamics: An Introduction, in: PanVascular Medicine, P. Lanzer (editor), Springer, January 2015, pp. 413-483. [ DOI : 10.1007/978-3-642-37078-6_22 ]
    https://hal.archives-ouvertes.fr/hal-01124593
  • 49M. Thiriet.
    Mechanotransduction and Vascular Resistance, in: PanVascular Medicine, P. Lanzer (editor), Springer, January 2015, pp. 703-767. [ DOI : 10.1007/978-3-642-37078-6_258 ]
    https://hal.archives-ouvertes.fr/hal-01124772
  • 50M. Thiriet.
    Physiology and Pathophysiology of Arterial Flow, in: PanVascular Medicine, P. Lanzer (editor), Springer, January 2015, pp. 533-568. [ DOI : 10.1007/978-3-642-37078-6_26 ]
    https://hal.archives-ouvertes.fr/hal-01125005
  • 51M. Thiriet.
    Physiology and Pathophysiology of Microcirculation, in: PanVascular Medicine, P. Lanzer (editor), Springer, January 2015, pp. 591-637. [ DOI : 10.1007/978-3-642-37078-6_24 ]
    https://hal.archives-ouvertes.fr/hal-01125327
  • 52M. Thiriet.
    Physiology and Pathophysiology of Venous Flow, in: PanVascular Medicine, P. Lanzer (editor), Springer, January 2015, pp. 569-589. [ DOI : 10.1007/978-3-642-37078-6_27 ]
    https://hal.archives-ouvertes.fr/hal-01125148
  • 53M. Thiriet, S. Twh, A. Garon.
    Biofluid Flow and Heat Transfer, in: Handbook of Fluid Dynamics, CRC Press, January 2015, 1 p.
    https://hal.archives-ouvertes.fr/hal-01126610

Internal Reports

  • 54E. Burman, A. Ern, M. A. Fernández.
    Fractional-step methods and finite elements with symmetric stabilization for the transient Oseen problem, Inria, November 2015, no RR-8799.
    https://hal.inria.fr/hal-01218328
  • 55M. Landajuela, M. Vidrascu, D. Chapelle, M. A. Fernández.
    Coupling schemes for the FSI forward prediction challenge: comparative study and validation, Inria, December 2015, no RR-8824.
    https://hal.inria.fr/hal-01239931

Other Publications

  • 56L. Boudin, F. Salvarani.
    Compactness of linearized kinetic operators, November 2015, working paper or preprint.
    https://hal.archives-ouvertes.fr/hal-01242573
  • 57M. Boulakia, S. Guerrero.
    On the interaction problem between a compressible fluid and a Saint-Venant Kirchhoff elastic structure, October 2015, working paper or preprint.
    https://hal.inria.fr/hal-01229577
  • 58M. Boulakia, E. Schenone.
    Stability estimates for some parameters of a reaction-diffusion equation coupled with an ODE, November 2015, working paper or preprint.
    https://hal.inria.fr/hal-01227427
  • 59Y. Deleuze, M. Thiriet, T. W. Sheu.
    On Three-Dimensional ALE Finite Element Model For Simulating Interstitial Medium Deformation in the Presence of a Moving Needle, June 2015, working paper or preprint.
    http://hal.upmc.fr/hal-01240292
  • 60D. Lombardi, S. Pant.
    A non-parametric k-nearest neighbour entropy estimator, June 2015, working paper or preprint.
    https://hal.archives-ouvertes.fr/hal-01166056
  • 61M. Olivia, S. Salmon, M. SZOPOS, M. Thiriet.
    Blood flow in the cerebral venous system: modeling and simulation, October 2015, working paper or preprint.
    https://hal.archives-ouvertes.fr/hal-01219790
  • 62E. Schenone, A. Collin, J.-F. Gerbeau.
    Numerical simulation of electrocardiograms for full cardiac cycles in healthy and pathological conditions, August 2015, In press (in International Journal for Numerical Methods in Biomedical Engineering). [ DOI : 10.1002/cnm.2744 ]
    https://hal.inria.fr/hal-01184744
References in notes
  • 63A. Amsden, P. O'Rourke, T. Butler.
    A computer program for chemically reactive flows with sprays, Los Alamos National Laboratory, 1989, no LA-11560-MS.
  • 64M. A. Biot.
    Theory of propagation of elastic waves in a fluid-saturated porous solid. II higher frequency range, in: J. Acoust. Soc. Am., 1956, vol. 28, pp. 179–191.
  • 65D. Chapelle, J. Sainte-Marie, J.-F. Gerbeau, I. Vignon-Clementel.
    A poroelastic model valid in large strains with applications to perfusion in cardiac modeling, in: Computational Mechanics, 2010, vol. 46, no 1, pp. 91-101. [ DOI : 10.1007/s00466-009-0452-x ]
  • 66J. Dupays, Y. Fabignon, P. Villedieu, G. Lavergne, G. Estivalezes.
    Some aspects of two phase flows in solid propellant rocket motors, in Solid propellant chemistry, combustion and interior ballistics, in: Progress in Astronautics and Aeronautics, V. Yang, T. Brill, W. Pen (editors), Academic Press, 2000, vol. 185.
  • 67G. Lines, P. Grottum, A. Tveito.
    Modeling the electrical activity of the heart. A bidomain model of the ventricles embedded in a torso, in: Comput. Visual. Sci., 2003, vol. 5, pp. 195-213.
  • 68R. Motte.
    A numerical method for solving particle-fluid equations, in: Trends in numerical and physical modeling for industrial multiphase flows, Cargèse, France, 2000.
  • 69A. Quarteroni, S. Ragni, A. Veneziani.
    Coupling between lumped and distributed models for blood flow problems, in: Comput. Visual Sci., 2001, vol. 4, pp. 111–124.
  • 70F. Sachse.
    Computational Cardiology: Modeling of Anatomy, Electrophysiology, and Mechanics, Springer-Verlag, 2004.
  • 71J. Sundnes, G. Lines, X. Cai, B. Nielsen, K.-A. Mardal, A. Tveito.
    Computing the electrical activity in the heart, Springer-Verlag, 2006.
  • 72K. Terzaghi.
    Theoretical Soil Mechanics, John Wiley and Sons, New-York, 1943.
  • 73F. Williams.
    Combustion theory, 2nd, Benjamin Cummings, 1985.

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