<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1 plus MathML 2.0 plus SVG 1.1//EN" "http://www.w3.org/2002/04/xhtml-math-svg/xhtml-math-svg.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
  <head>
    <meta http-equiv="Content-Type" content="application/xhtml+xml; charset=utf-8"/>
    <title>Project-Team:BONSAI</title>
    <link rel="stylesheet" href="../static/css/raweb.css" type="text/css"/>
    <meta name="description" content="Bioinformatics and Sequence Analysis"/>
    <meta name="dc.title" content="Bioinformatics and Sequence Analysis"/>
    <meta name="dc.subject" content=""/>
    <meta name="dc.publisher" content="INRIA"/>
    <meta name="dc.date" content="(SCHEME=ISO8601) 2016-01"/>
    <meta name="dc.type" content="Report"/>
    <meta name="dc.language" content="(SCHEME=ISO639-1) en"/>
    <meta name="projet" content="BONSAI"/>
    <script type="text/javascript" src="https://raweb.inria.fr/rapportsactivite/RA2016/static/MathJax/MathJax.js?config=TeX-MML-AM_CHTML">
      <!--MathJax-->
    </script>
  </head>
  <body>
    <div class="tdmdiv">
      <div class="logo">
        <a href="http://www.inria.fr">
          <img style="align:bottom; border:none" src="../static/img/icons/logo_INRIA-coul.jpg" alt="Inria"/>
        </a>
      </div>
      <div class="TdmEntry">
        <div class="tdmentete">
          <a href="uid0.html">Project-Team Bonsai</a>
        </div>
        <span>
          <a href="uid1.html">Members</a>
        </span>
      </div>
      <div class="TdmEntry">Overall Objectives<ul><li><a href="./uid3.html">Presentation</a></li></ul></div>
      <div class="TdmEntry">Research Program<ul><li><a href="uid5.html&#10;&#9;&#9;  ">Sequence processing for Next Generation Sequencing</a></li><li><a href="uid6.html&#10;&#9;&#9;  ">Noncoding RNA</a></li><li><a href="uid7.html&#10;&#9;&#9;  ">Genome structures</a></li><li><a href="uid8.html&#10;&#9;&#9;  ">Nonribosomal peptides</a></li></ul></div>
      <div class="TdmEntry">Application Domains<ul><li><a href="uid10.html&#10;&#9;&#9;  ">Life Sciences and health</a></li></ul></div>
      <div class="TdmEntry">
        <a href="./uid12.html">Highlights of the Year</a>
      </div>
      <div class="TdmEntry">New Software and Platforms<ul><li><a href="uid14.html&#10;&#9;&#9;  ">BCALM 2</a></li><li><a href="uid18.html&#10;&#9;&#9;  ">NORINE</a></li><li><a href="uid23.html&#10;&#9;&#9;  ">Olo</a></li><li><a href="uid28.html&#10;&#9;&#9;  ">Vidjil</a></li></ul></div>
      <div class="TdmEntry">New Results<ul><li><a href="uid34.html&#10;&#9;&#9;  ">Approximate pattern matching</a></li><li><a href="uid35.html&#10;&#9;&#9;  ">Parallel algorithm for de Bruijn graph compaction</a></li><li><a href="uid36.html&#10;&#9;&#9;  ">Range minimum query</a></li><li><a href="uid37.html&#10;&#9;&#9;  ">Coding isoform structures</a></li><li><a href="uid38.html&#10;&#9;&#9;  ">Nonribosomal peptides</a></li><li><a href="uid39.html&#10;&#9;&#9;  ">High-throughput V(D)J repertoire analysis</a></li><li><a href="uid40.html&#10;&#9;&#9;  ">Assembly of the giraffe genome and the gorilla Y-chromosome</a></li></ul></div>
      <div class="TdmEntry">Bilateral Contracts and Grants with Industry<ul><li><a href="uid42.html&#10;&#9;&#9;  ">Bilateral Contracts with Industry</a></li></ul></div>
      <div class="TdmEntry">Partnerships and Cooperations<ul><li><a href="uid44.html&#10;&#9;&#9;  ">National Initiatives</a></li><li><a href="uid50.html&#10;&#9;&#9;  ">European Initiatives</a></li><li><a href="uid54.html&#10;&#9;&#9;  ">International Initiatives</a></li><li><a href="uid80.html&#10;&#9;&#9;  ">International Research Visitors</a></li></ul></div>
      <div class="TdmEntry">Dissemination<ul><li><a href="uid84.html&#10;&#9;&#9;  ">Promoting Scientific Activities</a></li><li><a href="uid134.html&#10;&#9;&#9;  ">Teaching - Supervision - Juries</a></li><li><a href="uid208.html&#10;&#9;&#9;  ">Popularization</a></li></ul></div>
      <div class="TdmEntry">
        <div>Bibliography</div>
      </div>
      <div class="TdmEntry">
        <ul>
          <li>
            <a id="tdmbibentmajor" href="bibliography.html">Major publications</a>
          </li>
          <li>
            <a id="tdmbibentyear" href="bibliography.html#year">Publications of the year</a>
          </li>
        </ul>
      </div>
    </div>
    <div id="main">
      <div class="mainentete">
        <div id="head_agauche">
          <small><a href="http://www.inria.fr">
	    
	    Inria
	  </a> | <a href="../index.html">
	    
	    Raweb 
	    2016</a> | <a href="http://www.inria.fr/en/teams/bonsai">Presentation of the Project-Team BONSAI</a> | <a href="http://www.cristal.univ-lille.fr/bonsai/">BONSAI Web Site
	  </a></small>
        </div>
        <div id="head_adroite">
          <table class="qrcode">
            <tr>
              <td>
                <a href="bonsai.xml">
                  <img style="align:bottom; border:none" alt="XML" src="../static/img/icons/xml_motif.png"/>
                </a>
              </td>
              <td>
                <a href="bonsai.pdf">
                  <img style="align:bottom; border:none" alt="PDF" src="IMG/qrcode-bonsai-pdf.png"/>
                </a>
              </td>
              <td>
                <a href="../bonsai/bonsai.epub">
                  <img style="align:bottom; border:none" alt="e-pub" src="IMG/qrcode-bonsai-epub.png"/>
                </a>
              </td>
            </tr>
            <tr>
              <td/>
              <td>PDF
</td>
              <td>e-Pub
</td>
            </tr>
          </table>
        </div>
      </div>
      <!--FIN du corps du module-->
      <br/>
      <div class="bottomNavigation">
        <div class="tail_aucentre">
          <a href="./uid0.html" accesskey="U"><img style="align:bottom; border:none" alt="up" src="../static/img/icons/up_motif.jpg"/>  Home</a>
          <a href="./uid1.html" accesskey="N"> | Next <img style="align:bottom; border:none" alt="next" src="../static/img/icons/next_motif.jpg"/></a>
        </div>
        <br/>
      </div>
      <!--DEBUT1 du corps du module-->
      <div class="mainpage1">
        <div class="Titrepage1">2016 Project-Team Activity Report
	</div>
        <div class="Projetpage1">
          <div class="ProjetCourtpage1">BONSAI</div>
          <div class="ProjetLongpage1">Bioinformatics and Sequence Analysis<div class="DescriptionTeam"/></div>
        </div>
        <div class="CRpage1">
          <span class="definition">Research centre: </span>
          <a href="http://www.inria.fr/centre/lille">Lille - Nord Europe</a>
        </div>
        <div class="partner"><span class="definition">In partnership with: </span>CNRS, Université des sciences et technologies de Lille (Lille 1)<br/><span class="definition">In collaboration with: </span>Centre de Recherche en Informatique, Signal et Automatique de Lille<br/><br/></div>
        <div class="domainepage1"><span class="definition">Field: </span><a href="&#10;&#9;      http://www.inria.fr/en/domains/Digital-Health-Biology-and-Earth">Digital Health, Biology and Earth</a><br/><span class="definition">Theme: </span>Computational Biology</div>
        <div class="Keywordspage">
          <span class="definition">Keywords: </span>
        </div>
        <div class="Keywordspage1">
          <span class="definition2">
            <a href="/keywords/2016/computing">Computer Science and Digital Science: </a>
          </span>
          <ul>
            <li>6.2.7. - High performance computing</li>
            <li>7.2. - Discrete mathematics, combinatorics</li>
            <li>7.9. - Graph theory</li>
          </ul>
        </div>
        <div class="Keywordspage2">
          <span class="definition2">
            <a href="/keywords/2016/other">Other Research Topics and Application Domains: </a>
          </span>
          <ul>
            <li>1.1.6. - Genomics</li>
            <li>1.1.7. - Immunology</li>
            <li>1.1.8. - Evolutionnary biology</li>
            <li>1.1.9. - Bioinformatics</li>
            <li>1.1.13. - Plant Biology</li>
            <li>1.1.14. - Microbiology</li>
            <li>1.2. - Ecology</li>
            <li>1.2.1. - Biodiversity</li>
            <li>2.2.3. - Cancer</li>
          </ul>
        </div>
      </div>
    </div>
  </body>
</html>
