<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1 plus MathML 2.0 plus SVG 1.1//EN" "http://www.w3.org/2002/04/xhtml-math-svg/xhtml-math-svg.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
  <head>
    <meta http-equiv="Content-Type" content="application/xhtml+xml; charset=utf-8"/>
    <title>Project-Team:LIFEWARE</title>
    <link rel="stylesheet" href="../static/css/raweb.css" type="text/css"/>
    <meta name="description" content="Computational systems biology and optimization"/>
    <meta name="dc.title" content="Computational systems biology and optimization"/>
    <meta name="dc.subject" content=""/>
    <meta name="dc.publisher" content="INRIA"/>
    <meta name="dc.date" content="(SCHEME=ISO8601) 2016-01"/>
    <meta name="dc.type" content="Report"/>
    <meta name="dc.language" content="(SCHEME=ISO639-1) en"/>
    <meta name="projet" content="LIFEWARE"/>
    <script type="text/javascript" src="https://raweb.inria.fr/rapportsactivite/RA2016/static/MathJax/MathJax.js?config=TeX-MML-AM_CHTML">
      <!--MathJax-->
    </script>
  </head>
  <body>
    <div class="tdmdiv">
      <div class="logo">
        <a href="http://www.inria.fr">
          <img style="align:bottom; border:none" src="../static/img/icons/logo_INRIA-coul.jpg" alt="Inria"/>
        </a>
      </div>
      <div class="TdmEntry">
        <div class="tdmentete">
          <a href="uid0.html">Project-Team Lifeware</a>
        </div>
        <span>
          <a href="uid1.html">Members</a>
        </span>
      </div>
      <div class="TdmEntry">
        <a href="./uid3.html">Overall Objectives</a>
      </div>
      <div class="TdmEntry">Research Program<ul><li><a href="uid5.html&#10;&#9;&#9;  ">Computational Systems Biology</a></li><li><a href="uid6.html&#10;&#9;&#9;  ">Modeling of Phenotypic Heterogeneity in Cellular Processes</a></li><li><a href="uid9.html&#10;&#9;&#9;  ">Logical Paradigm for Systems Biology</a></li><li><a href="uid12.html&#10;&#9;&#9;  ">External Control of Cell Processes</a></li><li><a href="uid14.html&#10;&#9;&#9;  ">Chemical Reaction Network Theory</a></li><li><a href="uid17.html&#10;&#9;&#9;  ">Mixed Analog-Digital Computation with Biochemical Reactions</a></li><li><a href="uid19.html&#10;&#9;&#9;  ">Constraint Solving and Optimization</a></li></ul></div>
      <div class="TdmEntry">Application Domains<ul><li><a href="uid23.html&#10;&#9;&#9;  ">Preamble</a></li><li><a href="uid24.html&#10;&#9;&#9;  ">Modeling platform for systems biology</a></li><li><a href="uid25.html&#10;&#9;&#9;  ">Couplings between the cell cycle and the circadian clock</a></li><li><a href="uid27.html&#10;&#9;&#9;  ">Biosensor design and implementation in non-living protocells</a></li></ul></div>
      <div class="TdmEntry">
        <a href="./uid29.html">Highlights of the Year</a>
      </div>
      <div class="TdmEntry">New Software and Platforms<ul><li><a href="uid32.html&#10;&#9;&#9;  ">BIOCHAM</a></li><li><a href="uid36.html&#10;&#9;&#9;  ">CellStar</a></li><li><a href="uid40.html&#10;&#9;&#9;  ">CLP2Zinc</a></li></ul></div>
      <div class="TdmEntry">New Results<ul><li><a href="uid45.html&#10;&#9;&#9;  ">Analog computation in the cell: specifications, compilation into biochemical reactions and computational complexity</a></li><li><a href="uid47.html&#10;&#9;&#9;  ">Influence systems vs reaction systems</a></li><li><a href="uid48.html&#10;&#9;&#9;  ">What population reveals about individual cell identity: Single-cell parameter estimation of models of gene expression in yeast</a></li><li><a href="uid49.html&#10;&#9;&#9;  ">The cost of cellular adaptation to stress: tradeoff between short-term and long-term adaptation to osmotic stress in yeast</a></li><li><a href="uid50.html&#10;&#9;&#9;  ">Balancing a genetic inverted pendulum</a></li><li><a href="uid51.html&#10;&#9;&#9;  ">A look-ahead simulation algorithm for DBN models of biochemical pathways</a></li><li><a href="uid52.html&#10;&#9;&#9;  ">Logical model specification aided by model-checking techniques: application to the mammalian cell cycle regulation</a></li><li><a href="uid53.html&#10;&#9;&#9;  ">Model-based investigation of the circadian clock and cell cycle coupling in mouse embryonic fibroblasts: prediction of RevErb–α up-regulation during mitosis</a></li><li><a href="uid54.html&#10;&#9;&#9;  ">Stochastic continuous optimization backend for the constraint modelling language MiniZinc with applications to geometrical placement problems</a></li><li><a href="uid55.html&#10;&#9;&#9;  ">Mixture model CMA-ES</a></li><li><a href="uid57.html&#10;&#9;&#9;  ">Metro energy optimization through rescheduling</a></li></ul></div>
      <div class="TdmEntry">Partnerships and Cooperations<ul><li><a href="uid59.html&#10;&#9;&#9;  ">National Initiatives</a></li><li><a href="uid69.html&#10;&#9;&#9;  ">International Initiatives</a></li><li><a href="uid74.html&#10;&#9;&#9;  ">International Research Visitors</a></li></ul></div>
      <div class="TdmEntry">Dissemination<ul><li><a href="uid85.html&#10;&#9;&#9;  ">Promoting Scientific Activities</a></li><li><a href="uid150.html&#10;&#9;&#9;  ">Teaching - Supervision - Juries</a></li><li><a href="uid176.html&#10;&#9;&#9;  ">Popularization</a></li></ul></div>
      <div class="TdmEntry">
        <div>Bibliography</div>
      </div>
      <div class="TdmEntry">
        <ul>
          <li>
            <a id="tdmbibentyear" href="bibliography.html">Publications of the year</a>
          </li>
        </ul>
      </div>
    </div>
    <div id="main">
      <div class="mainentete">
        <div id="head_agauche">
          <small><a href="http://www.inria.fr">
	    
	    Inria
	  </a> | <a href="../index.html">
	    
	    Raweb 
	    2016</a> | <a href="http://www.inria.fr/en/teams/lifeware">Presentation of the Project-Team LIFEWARE</a> | <a href="http://lifeware.inria.fr/">LIFEWARE Web Site
	  </a></small>
        </div>
        <div id="head_adroite">
          <table class="qrcode">
            <tr>
              <td>
                <a href="lifeware.xml">
                  <img style="align:bottom; border:none" alt="XML" src="../static/img/icons/xml_motif.png"/>
                </a>
              </td>
              <td>
                <a href="lifeware.pdf">
                  <img style="align:bottom; border:none" alt="PDF" src="IMG/qrcode-lifeware-pdf.png"/>
                </a>
              </td>
              <td>
                <a href="../lifeware/lifeware.epub">
                  <img style="align:bottom; border:none" alt="e-pub" src="IMG/qrcode-lifeware-epub.png"/>
                </a>
              </td>
            </tr>
            <tr>
              <td/>
              <td>PDF
</td>
              <td>e-Pub
</td>
            </tr>
          </table>
        </div>
      </div>
      <!--FIN du corps du module-->
      <br/>
      <div class="bottomNavigation">
        <div class="tail_aucentre">
          <a href="./uid0.html" accesskey="U"><img style="align:bottom; border:none" alt="up" src="../static/img/icons/up_motif.jpg"/>  Home</a>
          <a href="./uid1.html" accesskey="N"> | Next <img style="align:bottom; border:none" alt="next" src="../static/img/icons/next_motif.jpg"/></a>
        </div>
        <br/>
      </div>
      <!--DEBUT1 du corps du module-->
      <div class="mainpage1">
        <div class="Titrepage1">2016 Project-Team Activity Report
	</div>
        <div class="Projetpage1">
          <div class="ProjetCourtpage1">LIFEWARE</div>
          <div class="ProjetLongpage1">Computational systems biology and optimization<div class="DescriptionTeam"/></div>
        </div>
        <div class="CRpage1">
          <span class="definition">Research centre: </span>
          <a href="http://www.inria.fr/centre/saclay">Saclay - Île-de-France</a>
        </div>
        <div class="partner">
          <br/>
        </div>
        <div class="domainepage1"><span class="definition">Field: </span><a href="&#10;&#9;      http://www.inria.fr/en/domains/Digital-Health-Biology-and-Earth">Digital Health, Biology and Earth</a><br/><span class="definition">Theme: </span>Computational Biology</div>
        <div class="Keywordspage">
          <span class="definition">Keywords: </span>
        </div>
        <div class="Keywordspage1">
          <span class="definition2">
            <a href="/keywords/2016/computing">Computer Science and Digital Science: </a>
          </span>
          <ul>
            <li>2.1.1. - Semantics of programming languages</li>
            <li>2.1.5. - Constraint programming</li>
            <li>2.1.10. - Domain-specific languages</li>
            <li>2.2.1. - Static analysis</li>
            <li>2.3.2. - Cyber-physical systems</li>
            <li>2.4. - Verification, reliability, certification</li>
            <li>2.4.1. - Analysis</li>
            <li>2.4.2. - Model-checking</li>
            <li>2.4.3. - Proofs</li>
            <li>6. - Modeling, simulation and control</li>
            <li>6.1. - Mathematical Modeling</li>
            <li>6.1.1. - Continuous Modeling (PDE, ODE)</li>
            <li>6.1.2. - Stochastic Modeling (SPDE, SDE)</li>
            <li>6.1.3. - Discrete Modeling (multi-agent, people centered)</li>
            <li>6.1.4. - Multiscale modeling</li>
            <li>6.1.5. - Multiphysics modeling</li>
            <li>6.2.4. - Statistical methods</li>
            <li>6.2.6. - Optimization</li>
            <li>6.3.1. - Inverse problems</li>
            <li>6.3.4. - Model reduction</li>
            <li>7.2. - Discrete mathematics, combinatorics</li>
            <li>7.3. - Optimization</li>
            <li>7.4. - Logic in Computer Science</li>
            <li>7.9. - Graph theory</li>
            <li>8.7. - AI algorithmics</li>
          </ul>
        </div>
        <div class="Keywordspage2">
          <span class="definition2">
            <a href="/keywords/2016/other">Other Research Topics and Application Domains: </a>
          </span>
          <ul>
            <li>1. - Life sciences</li>
            <li>1.1.2. - Molecular biology</li>
            <li>1.1.3. - Cellular biology</li>
            <li>1.1.9. - Bioinformatics</li>
            <li>1.1.10. - Mathematical biology</li>
            <li>1.1.11. - Systems biology</li>
            <li>1.1.12. - Synthetic biology</li>
            <li>1.4. - Pathologies</li>
            <li>2. - Health</li>
            <li>2.2.3. - Cancer</li>
            <li>2.4.1. - Pharmaco kinetics and dynamics</li>
            <li>2.4.2. - Drug resistance</li>
            <li>7. - Transport and logistics</li>
            <li>9. - Society and Knowledge</li>
          </ul>
        </div>
      </div>
    </div>
  </body>
</html>
