Project-Team M3disim
Team, Visitors, External Collaborators
Overall Objectives
Research Program
Highlights of the Year
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
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Bibliography

Major publications by the team in recent years
  • 1J. Albella Martínez, S. Imperiale, P. Joly, J. Rodríguez.
    Solving 2D linear isotropic elastodynamics by means of scalar potentials: a new challenge for finite elements, in: Journal of Scientific Computing, 2018. [ DOI : 10.1007/s10915-018-0768-9 ]
    https://hal.inria.fr/hal-01803536
  • 2M. Caruel, P. Moireau, D. Chapelle.
    Stochastic modeling of chemical-mechanical coupling in striated muscles, in: Biomechanics and Modeling in Mechanobiology, 2018, forthcoming. [ DOI : 10.1007/s10237-018-1102-z ]
    https://hal.inria.fr/hal-01928279
  • 3R. Chabiniok, P. Moireau, P.-F. Lesault, A. Rahmouni, J.-F. Deux, D. Chapelle.
    Estimation of tissue contractility from cardiac cine-MRI using a biomechanical heart model, in: Biomechanics and Modeling in Mechanobiology, 2012, vol. 11, no 5, pp. 609-630. [ DOI : 10.1007/s10237-011-0337-8 ]
    http://hal.inria.fr/hal-00654541
  • 4D. Chapelle, K. Bathe.
    The Finite Element Analysis of Shells - Fundamentals - Second Edition, Computational Fluid and Solid Mechanics, Springer, 2011, 410 p. [ DOI : 10.1007/978-3-642-16408-8 ]
    http://hal.inria.fr/hal-00654533
  • 5D. Chapelle, N. Cîndea, P. Moireau.
    Improving convergence in numerical analysis using observers - The wave-like equation case, in: Mathematical Models and Methods in Applied Sciences, 2012, vol. 22, no 12. [ DOI : 10.1142/S0218202512500406 ]
    http://hal.inria.fr/inria-00621052
  • 6D. Chapelle, P. Le Tallec, P. Moireau, M. Sorine.
    An energy-preserving muscle tissue model: formulation and compatible discretizations, in: International Journal for Multiscale Computational Engineering, 2012, vol. 10, no 2, pp. 189-211. [ DOI : 10.1615/IntJMultCompEng.2011002360 ]
    http://hal.inria.fr/hal-00678772
  • 7D. Chapelle, P. Moireau.
    General coupling of porous flows and hyperelastic formulations – From thermodynamics principles to energy balance and compatible time schemes, in: European Journal of Mechanics - B/Fluids, 2014, vol. 46, pp. 82-96, Updated version of previously published research report. [ DOI : 10.1016/j.euromechflu.2014.02.009 ]
    https://hal.inria.fr/inria-00520612
  • 8A. Collin, S. Imperiale.
    Mathematical analysis and 2-scale convergence of a heterogeneous microscopic bidomain model, in: Mathematical Models and Methods in Applied Sciences, 2018, forthcoming.
    https://hal.inria.fr/hal-01759914
  • 9B. Lynch, S. Bancelin, C. Bonod-Bidaud, J.-B. Gueusquin, F. Ruggiero, M.-C. Schanne-Klein, J.-M. Allain.
    A novel microstructural interpretation for the biomechanics of mouse skin derived from multiscale characterization, in: Acta Biomaterialia, 2017, vol. 50, pp. 302-311. [ DOI : 10.1016/j.actbio.2016.12.051 ]
    https://hal.archives-ouvertes.fr/hal-01531321
  • 10P. Moireau.
    A Discrete-time Optimal Filtering Approach for Non-linear Systems as a Stable Discretization of the Mortensen Observer, in: ESAIM: Control, Optimisation and Calculus of Variations, 2017, forthcoming.
    https://hal.inria.fr/hal-01671271
  • 11M. Sermesant, R. Chabiniok, P. Chinchapatnam, T. Mansi, F. Billet, P. Moireau, J.-M. Peyrat, K. C. Wong, J. Relan, K. S. Rhode, M. Ginks, P. Lambiase, H. Delingette, M. Sorine, C. A. Rinaldi, D. Chapelle, R. Razavi, N. Ayache.
    Patient-Specific Electromechanical Models of the Heart for Prediction of the Acute Effects of Pacing in CRT: a First Validation, in: Medical Image Analysis, 2012, vol. 16, no 1, pp. 201-215. [ DOI : 10.1016/j.media.2011.07.003 ]
    http://hal.inria.fr/inria-00616191
Publications of the year

Doctoral Dissertations and Habilitation Theses

  • 12F. Caforio.
    Mathematical modelling and numerical simulation of elastic wave propagation in soft tissues with application to cardiac elastography, Université Paris-Saclay, January 2019.
    https://pastel.archives-ouvertes.fr/tel-02262282
  • 13F. Kimmig.
    Modélisation multi-échelles de la contraction musculaire : De la dynamique stochastique des moteurs moléculaires à la mécanique des milieux continus, Université Paris-Saclay, December 2019.
    https://tel.archives-ouvertes.fr/tel-02439432

Articles in International Peer-Reviewed Journals

  • 14J. Albella Martínez, H. Ben Dhia, S. Imperiale, J. Rodríguez.
    Mathematical and numerical study of transient wave scattering by obstacles with the Arlequin Method, in: SIAM Journal on Numerical Analysis, 2019, forthcoming. [ DOI : 10.1137/19M1263959 ]
    https://hal.inria.fr/hal-01898420
  • 15D. H. Baffet, M. J. Grote, S. Imperiale, M. Kachanovska.
    Energy Decay and Stability of a Perfectly Matched Layer For the Wave Equation, in: Journal of Scientific Computing, November 2019. [ DOI : 10.1007/s10915-019-01089-9 ]
    https://hal.archives-ouvertes.fr/hal-01865484
  • 16B. Burtschell, P. Moireau, D. Chapelle.
    Numerical analysis for an energy-stable total discretization of a poromechanics model with inf-sup stability, in: Acta Mathematicae Applicatae Sinica, 2019, vol. 35, no 1, pp. 28-53. [ DOI : 10.1007/s10255-019-0799-5 ]
    https://hal.inria.fr/hal-01928312
  • 17F. Caforio, S. Imperiale.
    High-order discrete fourier transform for the solution of the Poisson equation, in: SIAM Journal on Scientific Computing, June 2019, vol. 41, no 5, pp. A2747-A2771. [ DOI : 10.1137/18M1225410 ]
    https://hal.inria.fr/hal-01914257
  • 18M. Caruel, P. Moireau, D. Chapelle.
    Stochastic modeling of chemical-mechanical coupling in striated muscles, in: Biomechanics and Modeling in Mechanobiology, 2019. [ DOI : 10.1007/s10237-018-1102-z ]
    https://hal.inria.fr/hal-01928279
  • 19J. Chabassier, J. Diaz, S. Imperiale.
    Construction and analysis of fourth order, energy consistent, family of explicit time discretizations for dissipative linear wave equations, in: ESAIM: Mathematical Modelling and Numerical Analysis, 2019, forthcoming.
    https://hal.inria.fr/hal-01894238
  • 20F. Clément, B. Laroche, F. Robin.
    Analysis and numerical simulation of an inverse problem for a structured cell population dynamics model, in: Mathematical Biosciences & Engineering, 2019, vol. 16, no 4, pp. 3018-3046. [ DOI : 10.3934/mbe.2019150 ]
    https://hal.archives-ouvertes.fr/hal-02154588
  • 21F. Clément, F. Robin, R. Yvinec.
    Analysis and calibration of a linear model for structured cell populations with unidirectional motion : Application to the morphogenesis of ovarian follicles, in: SIAM Journal on Applied Mathematics, February 2019, vol. 79, no 1, pp. 207-229, https://arxiv.org/abs/1712.05372. [ DOI : 10.1137/17M1161336 ]
    https://hal.archives-ouvertes.fr/hal-01852560
  • 22A. Collin, S. Imperiale, P. Moireau, J.-F. Gerbeau, D. Chapelle.
    Apprehending the effects of mechanical deformations in cardiac electrophysiology - An homogenization approach, in: Mathematical Models and Methods in Applied Sciences, December 2019, vol. 29, no 13, pp. 2377-2417. [ DOI : 10.1142/S0218202519500490 ]
    https://hal.inria.fr/hal-02267941
  • 23J. Diani, P. Le Tallec.
    A fully equilibrated microsphere model with damage for rubberlike materials, in: Journal of the Mechanics and Physics of Solids, March 2019, vol. 124, pp. 702-713. [ DOI : 10.1016/j.jmps.2018.11.021 ]
    https://hal.archives-ouvertes.fr/hal-01986861
  • 24G. Ducourthial, J. Affagard, M. Schmeltz, X. Solinas, M. Lopez‐Poncelas, C. Bonod-Bidaud, R. Rubio‐Amador, F. Ruggiero, J.-M. Allain, E. Beaurepaire, M.-C. Schanne-Klein.
    Monitoring dynamic collagen reorganization during skin stretching with fast polarization‐resolved second harmonic generation imaging, in: Journal of Biophotonics, January 2019, vol. 12, no 5, e201800336 p, https://arxiv.org/abs/1904.09177. [ DOI : 10.1002/jbio.201800336 ]
    https://hal.archives-ouvertes.fr/hal-02103594
  • 25H. N. T. Finsberg, J. Sundnes, C. Xi, L. C. Lee, X. Zhao, J. L. Tan, M. Genet, L. Zhong, S. T. Wall.
    Computational quantification of patient specific changes in ventricular dynamics associated with pulmonary hypertension, in: AJP - Heart and Circulatory Physiology, 2019. [ DOI : 10.1152/ajpheart.00094.2019 ]
    https://hal.archives-ouvertes.fr/hal-02375749
  • 26J.-M. Frachisse, S. Thomine, J.-M. Allain.
    Calcium and plasma membrane force-gated ion channels behind development, in: Current Opinion in Plant Biology, 2019, vol. 53, pp. 57–64. [ DOI : 10.1016/j.pbi.2019.10.006 ]
    https://hal.archives-ouvertes.fr/hal-02389243
  • 27M. Genet.
    A relaxed growth modeling framework for controlling growth-induced residual stresses, in: Clinical Biomechanics, 2019. [ DOI : 10.1016/j.clinbiomech.2019.08.015 ]
    https://hal.archives-ouvertes.fr/hal-02069113
  • 28M. Guichard, J.-M. Allain, M. W. Bianchi, J.-M. Frachisse.
    Root Hair Sizer: an algorithm for high throughput recovery of different root hair and root developmental parameters, in: Plant Methods, December 2019, vol. 15, no 1. [ DOI : 10.1186/s13007-019-0483-z ]
    https://hal.archives-ouvertes.fr/hal-02293640
  • 29S. Imperiale, P. Moireau, A. Tonnoir.
    Analysis of an observer strategy for initial state reconstruction of wave-like systems in unbounded domains, in: ESAIM: Control, Optimisation and Calculus of Variations, April 2019. [ DOI : 10.1051/cocv/2019026 ]
    https://hal.inria.fr/hal-01898440
  • 30F. Kimmig, D. Chapelle, P. Moireau.
    Thermodynamic properties of muscle contraction models and associated discrete-time principles, in: Advanced Modeling and Simulation in Engineering Sciences, 2019, forthcoming. [ DOI : 10.1186/s40323-019-0128-9 ]
    https://hal.inria.fr/hal-02065957
  • 31Z. Ma, H. Maitournam, P. Le Tallec.
    An energy-based strategy for fatigue analysis in presence of general multi-axial time varying loadings, in: International Journal of Fatigue, March 2020, vol. 132, 105367 p. [ DOI : 10.1016/j.ijfatigue.2019.105367 ]
    https://hal.archives-ouvertes.fr/hal-02421856
  • 32A. Marboeuf, A. Claisse, P. Le Tallec.
    Conservative and entropy controlled remap for multi-material ALE simulations with space-staggered schemes, in: Journal of Computational Physics, August 2019, vol. 390, pp. 66-92. [ DOI : 10.1016/j.jcp.2019.04.017 ]
    https://hal.archives-ouvertes.fr/hal-02421917
  • 33M. Postel, A. Karam, G. Pézeron, S. Schneider-Maunoury, F. Clément.
    A multiscale mathematical model of cell dynamics during neurogenesis in the mouse cerebral cortex, in: BMC Bioinformatics, December 2019, vol. 20, no 1. [ DOI : 10.1186/s12859-019-3018-8 ]
    https://hal.inria.fr/hal-01783141
  • 34C. Zhang, A. Collin, P. Moireau, A. Trouvé, M. Rochoux.
    Front shape similarity measure for data-driven simulations of wildland fire spread based on state estimation: Application to the RxCADRE field-scale experiment, in: Proceedings of the Combustion Institute, 2019, vol. 37, no 3, pp. 4201-4209. [ DOI : 10.1016/j.proci.2018.07.112 ]
    https://hal.inria.fr/hal-01969130

International Conferences with Proceedings

  • 35E. Berberoglu, C. T. Stoeck, P. Moireau, S. Kozerke, M. Genet.
    Validation of Finite Element Image Registration-based Cardiac Strain Estimation from Magnetic Resonance Images, in: GAMM 2019 - 90th Annual Meeting of the International Association of Applied Mathematics and Mechanics, Vienna, Austria, PAMM proceedings in applied mathematics and mechanics, February 2019. [ DOI : 10.1002/pamm.201900418 ]
    https://hal.archives-ouvertes.fr/hal-02375735
  • 36R. Chabiniok, G. Bureau, A. Groth, J. Tintera, J. Weese, D. Chapelle, P. Moireau.
    Cardiac displacement tracking with data assimilation combining a biomechanical model and an automatic contour detection, in: FIMH 2019 - Proceedings of Functional Imaging and Modeling of Heart, Bordeaux, France, Lecture Notes in Computer Science (LNCS), June 2019, vol. 11504, pp. 405-414.
    https://hal.archives-ouvertes.fr/hal-02186804
  • 37A. Gérard, A. Collin, G. Bureau, P. Moireau, Y. Coudière.
    Model assessment through data assimilation of realistic data in cardiac electrophysiology, in: FIMH 2019 - 10th Functional Imaging and Modeling of the Heart, Bordeaux, France, June 2019.
    https://hal.inria.fr/hal-02172102
  • 38A. Le Gall, F. Vallée, D. Chapelle, R. Chabiniok.
    Minimally-invasive estimation of patient-specific end-systolic elastance using a biomechanical heart model, in: FIMH 2019 - 10th Functional Imaging and Modelling of the Heart, Bordeaux, France, June 2019.
    https://hal.archives-ouvertes.fr/hal-02153611
  • 39L. C. Lee, M. Genet.
    Validation of Equilibrated Warping-image registration with mechanical regularization-on 3D ultrasound images, in: FIMH 2019 - International Conference on Functional Imaging and Modeling of the Heart, Bordeaux, France, Lecture notes in computer science, Springer, May 2019, vol. 11504, pp. 334-341. [ DOI : 10.1007/978-3-030-21949-9_36 ]
    https://hal.archives-ouvertes.fr/hal-02146580
  • 40B. Ruijsink, K. Zugaj, K. Pushparajah, R. Chabiniok.
    Model-based indices of early-stage cardiovascular failure and its therapeutic management in Fontan patients, in: FIMH 2019 - 10th Functional Imaging and Modeling of Heart, Bordeaux, France, Lecture Notes in Computer Science (LNCS), June 2019, vol. 11504, pp. 379-387.
    https://hal.archives-ouvertes.fr/hal-02186819

Conferences without Proceedings

  • 41G. Beck, S. Imperiale, P. Joly.
    Effective models for non-perfectly conducting thin coaxial cables, in: Waves 2019 - 14th International Conference on Mathematical and Numerical Aspects of Wave Propagation, Vienna, Austria, 2019.
    https://hal.archives-ouvertes.fr/hal-02414849
  • 42M. Genet.
    Medical images registration with finite elements and mechanical regularization, in: GAMM 2019 - 90th Annual Meeting of the International Association of Applied Mathematics and Mechanics, Vienna, Austria, February 2019.
    https://hal.archives-ouvertes.fr/hal-02069100
  • 43C. Patte, M. Genet, C. Fetita, P.-Y. Brillet, D. Chapelle.
    Mécanique pulmonaire personnalisée : modélisation et estimation - Application à la fibrose pulmonaire, in: CSMA 2019 - 14ème Colloque National en Calcul des Structures, Giens, France, May 2019.
    https://hal.archives-ouvertes.fr/hal-02068920
  • 44K. Škardová, M. Rambausek, R. Chabiniok, M. Genet.
    Mechanical and Imaging Models-based Image Registration, in: VipIMAGE 2019 - VII ECCOMAS Thematic Conference on Computational Vision and Medical Image Processing, Porto, Portugal, 2019. [ DOI : 10.1007/978-3-030-32040-9_9 ]
    https://hal.archives-ouvertes.fr/hal-02186828

Scientific Books (or Scientific Book chapters)

  • 45J.-M. Allain, B. Lynch, M.-C. Schanne-Klein.
    Multiscale characterization of skin mechanics through in situ imaging, in: Skin Biophysics : From Experimental Characterisation to Advanced Modelling, G. Limbert (editor), Studies in Mechanobiology, Tissue Engineering and Biomaterials, Springer International Publishing, 2019, vol. 22, pp. 265-280. [ DOI : 10.1007/978-3-030-13279-8_8 ]
    https://hal-polytechnique.archives-ouvertes.fr/hal-02114148
  • 46S. Bancelin, B. Lynch, C. Bonod-Bidaud, P. Dokládal, F. Ruggiero, J.-M. Allain, M.-C. Schanne-Klein.
    Combination of Traction Assays and Multiphoton Imaging to Quantify Skin Biomechanics, in: Collagen : Methods and Protocols, I. Sagi, N. A. Afratis (editors), Methods in Molecular Biology, Humana Press, March 2019, vol. 1944, pp. 145-155. [ DOI : 10.1007/978-1-4939-9095-5_11 ]
    https://hal-polytechnique.archives-ouvertes.fr/hal-02115604

Internal Reports

Patents

Other Publications

  • 49J. Albella Martínez, S. Imperiale, P. Joly, J. Rodríguez.
    Numerical Analysis of a Method for Solving 2D Linear Isotropic Elastodynamics with Free Boundary Condition using Potentials and Finite Elements, November 2019, working paper or preprint. [ DOI : 10.1007/s10915-018-0768-9 ]
    https://hal.inria.fr/hal-02345808
  • 50C. Bonnet, K. Chahour, F. Clément, M. Postel, R. Yvinec.
    Multiscale population dynamics in reproductive biology: singular perturbation reduction in deterministic and stochastic models, March 2019, https://arxiv.org/abs/1903.08555 - working paper or preprint.
    https://hal.inria.fr/hal-02075253
  • 51F. Caforio, S. Imperiale.
    Mathematical analysis of a penalization strategy for incompressible elastodynamics, December 2019, working paper or preprint.
    https://hal.inria.fr/hal-02389286
  • 52F. Caforio, S. Imperiale.
    Mathematical modelling of transient shear wave elastography in the heart, March 2019, working paper or preprint.
    https://hal.inria.fr/hal-01992069
  • 53J. Chabassier, S. Imperiale.
    Construction and convergence analysis of conservative second order local time discretisation for wave equations based on domain decomposition, August 2019, working paper or preprint.
    https://hal.inria.fr/hal-01894357
  • 54F. Clément, F. Robin, R. Yvinec.
    Stochastic nonlinear model for somatic cell population dynamics during ovarian follicle activation, March 2019, https://arxiv.org/abs/1903.01316 - working paper or preprint.
    https://hal.inria.fr/hal-02057983

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