Team Mimesis
Team, Visitors, External Collaborators
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
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Bibliography

Major publications by the team in recent years
  • 1H. P. Bui, S. Tomar, H. Courtecuisse, M. Audette, S. Cotin, S. P. A. Bordas.
    Controlling the error on target motion through real-time mesh adaptation: applications to Deep Brain Stimulation, in: International Journal for Numerical Methods in Biomedical Engineering, December 2017, pp. 1-26. [ DOI : 10.1002/cnm.2958 ]
    https://hal.archives-ouvertes.fr/hal-01672962
  • 2H. Courtecuisse, J. Allard, K. Pierre, S. P.-A. Bordas, S. Cotin, C. Duriez.
    Real-time simulation of contact and cutting of heterogeneous soft-tissues, in: Medical Image Analysis, February 2014, 20 p.
    https://hal.inria.fr/hal-01097108
  • 3J. Garcia Guevara, I. Peterlik, M.-O. Berger, S. Cotin.
    Biomechanics-based graph matching for augmented CT-CBCT, in: IJCARS, Apr 2018.
    https://doi.org/10.1007/s11548-018-1755-1
  • 4J. Garcia Guevara, I. Peterlik, M.-O. Berger, S. Cotin.
    Elastic Registration Based on Compliance Analysis and Biomechanical Graph Matching, in: Annals of Biomedical Engineering, 2019, pp. 1–16.
  • 5N. Haouchine, W. Kuang, S. Cotin, M. Yip.
    Vision-based Force Feedback Estimation for Robot-assisted Surgery using Instrument-constrained Biomechanical 3D Maps, in: IEEE Robotics and Automation Letters, February 2018, Proceedings of International Conference on Robotics and Automation ICRA 2018. [ DOI : 10.1109/LRA.2018.2810948 ]
    https://hal.inria.fr/hal-01720259
  • 6E. Kerrien, A. Yureidini, J. Dequidt, C. Duriez, R. Anxionnat, S. Cotin.
    Blood vessel modeling for interactive simulation of interventional neuroradiology procedures, in: Medical Image Analysis, January 2017, vol. 35, pp. 685 - 698. [ DOI : 10.1016/j.media.2016.10.003 ]
    https://hal.inria.fr/hal-01390923
  • 7A. Mendizabal, T. Fountoukidou, J. Hermann, R. Sznitman, S. Cotin.
    A Combined Simulation & Machine Learning Approach for Image-based Force Classification during Robotized Intravitreal Injections, in: MICCAI 2018 - 21st International Conference on Medical Image Computing and Computer Assisted Intervention, Granada, Spain, September 2018.
    https://hal.archives-ouvertes.fr/hal-01878682
  • 8F. Morin, H. Courtecuisse, I. Reinertsen, F. Le Lann, O. Palombi, Y. Payan, M. Chabanas.
    Brain-shift compensation using intraoperative ultrasound and constraint-based biomechanical simulation, in: Medical Image Analysis, 2017, vol. 40, pp. 133 - 153. [ DOI : 10.1016/j.media.2017.06.003 ]
    https://hal.archives-ouvertes.fr/hal-01560157
  • 9I. Peterlik, H. Courtecuisse, R. Rohling, P. Abolmaesumi, C. Nguan, S. Cotin, S. E. Salcudean.
    Fast Elastic Registration of Soft Tissues under Large Deformations, in: Medical Image Analysis, 2017.
    https://hal.inria.fr/hal-01613757
  • 10A. Petit, S. Cotin, V. Lippiello, B. Siciliano.
    Capturing Deformations of Interacting Non-rigid Objects Using RGB-D Data, in: IROS 2018 - IEEE/RSJ International Conference on Intelligent Robots and Systems, Madrid, Spain, October 2018.
    https://hal.inria.fr/hal-01889771
  • 11D. V. Sorokin, I. Peterlik, V. V. Ulman, D. Svoboda, T. Nečasová, K. Morgaenko, L. Eisellová, L. Tesařová, M. Maška.
    FiloGen: A Model-Based Generator of Synthetic 3D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia, in: IEEE Transactions on Medical Imaging, June 2018, pp. 1-12. [ DOI : 10.1109/TMI.2018.2845884 ]
    https://hal.inria.fr/hal-01821338
  • 12H. Talbot, F. Spadoni, C. Duriez, M. Sermesant, M. O’Neill, P. Jaïs, S. Cotin, H. Delingette.
    Interactive training system for interventional electrocardiology procedures, in: Medical image analysis, 2017, vol. 35, pp. 225–237.
Publications of the year

Doctoral Dissertations and Habilitation Theses

Articles in International Peer-Reviewed Journals

  • 14Y. Adagolodjo, L. Goffin, M. De Mathelin, H. Courtecuisse.
    Robotic Insertion of Flexible Needle in Deformable Structures Using Inverse Finite-Element Simulation, in: IEEE Transactions on Robotics, March 2019, pp. 1-12. [ DOI : 10.1109/TRO.2019.2897858 ]
    https://hal.inria.fr/hal-02144487
  • 15J. Garcia Guevara, I. Peterlik, M.-O. Berger, S. Cotin.
    Elastic registration based on compliance analysis and biomechanical graph matching, in: Annals of Biomedical Engineering, September 2019, https://arxiv.org/abs/1912.06353. [ DOI : 10.1007/s10439-019-02364-4 ]
    https://hal.archives-ouvertes.fr/hal-02401280
  • 16S. Hinds, H. A. Jaeger, R. Burke, B. O’Sullivan, J. Keane, F. Trauzettel, B. Marques, S. Cotin, B. Bird, H. Leira, T. Langø, P. Cantillon-Murphy.
    Electromagnetic Tracking for Deep Liver Targets: A preliminary feasibility study, in: International Journal of Computer Assisted Radiology and Surgery, April 2019. [ DOI : 10.1007/s11548-019-01983-5 ]
    https://hal.inria.fr/hal-02121900
  • 17A. Mendizabal, P. Márquez-Neila, S. Cotin.
    Simulation of hyperelastic materials in real-time using deep learning, in: Medical Image Analysis, 2019, vol. 59, 101569 p. [ DOI : 10.1016/j.media.2019.101569 ]
    https://hal.inria.fr/hal-02097119
  • 18A. Mendizabal, R. Sznitman, S. Cotin.
    Force classification during robotic interventions through simulation-trained neural networks, in: International Journal of Computer Assisted Radiology and Surgery, July 2019. [ DOI : 10.1007/s11548-019-02048-3 ]
    https://hal.inria.fr/hal-02268782
  • 19E. Tagliabue, D. Dall’Alba, E. Magnabosco, C. Tenga, I. Peterlik, P. Fiorini.
    Position-based modeling of lesion displacement in Ultrasound-guided breast biopsy, in: International Journal of Computer Assisted Radiology and Surgery, 2019, vol. 14, no 8, pp. 1329-1339. [ DOI : 10.1007/s11548-019-01997-z ]
    https://hal.archives-ouvertes.fr/hal-02276090
  • 20Z. Zhang, A. Petit, J. Dequidt, C. Duriez.
    Calibration and External Force Sensing for Soft Robots using an RGB-D Camera, in: IEEE Robotics and Automation Letters, March 2019, vol. 4, no 3, pp. 2356 - 2363. [ DOI : 10.1109/LRA.2019.2903356 ]
    https://hal.archives-ouvertes.fr/hal-02060976

International Conferences with Proceedings

  • 21J.-N. Brunet, V. Magnoux, B. Ozell, S. Cotin.
    Corotated meshless implicit dynamics for deformable bodies, in: WSCG 2019 - 27th International Conference on Computer Graphics, Visualization and Computer Vision, Pilsen, Czech Republic, Západočeská univerzita, May 2019. [ DOI : 10.24132/CSRN.2019.2901.1.11 ]
    https://hal.inria.fr/hal-02119414
  • 22J.-N. Brunet, A. Mendizabal, A. Petit, N. Golse, E. Vibert, S. Cotin.
    Physics-based Deep Neural Network for Augmented Reality during Liver Surgery, in: Medical Image Computing and Computer Assisted Intervention 2019, 22nd International Conference, Shenzhen, China, October 2019, vol. 11768, no 137-145, 8 p. [ DOI : 10.1007/978-3-030-32254-0_16 ]
    https://hal.inria.fr/hal-02158862
  • 23A. Mendizabal, E. Tagliabue, J.-N. Brunet, D. Dall'Alba, P. Fiorini, S. Cotin.
    Physics-based Deep Neural Network for Real-Time Lesion Tracking in Ultrasound-guided Breast Biopsy, in: Computational Biomechanics for Medicine XIV, Shenzhen, China, 2019.
    https://hal.inria.fr/hal-02311277
  • 24A. Petit, N. Haouchine, F. Roy, D. B. Goldman, S. Cotin.
    Deformed Reality, in: Computer Graphics & Visual Computing (Eurographics), Bangor, United Kingdom, September 2019.
    https://hal.inria.fr/hal-02320444

Conferences without Proceedings

  • 25P. Baksic, H. Courtecuisse, M. Chabanas, B. Bayle.
    FEM-based confidence assessment of non-rigid registration, in: Surgetica 2019, Rennes, France, June 2019.
    https://hal.archives-ouvertes.fr/hal-02238974
  • 26N. W. Schulmann, S. Cotin, I. Peterlik.
    The effect of discretization on parameter identification. Application to patient-specific simulations, in: CMBBE 2019 - 16th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering, New York (NY), United States, August 2019.
    https://hal.archives-ouvertes.fr/hal-02276130

Other Publications

  • 27R. Haferssas, P.-H. Tournier, F. Nataf, S. Cotin.
    Simulation of soft tissue deformation in real-time using domain decomposition, December 2019, working paper or preprint.
    https://hal.archives-ouvertes.fr/hal-02400982
  • 28R. Trivisonne, E. Kerrien, S. Cotin.
    Constrained Stochastic State Estimation for 3D Shape Reconstruction of Catheters and Guidewires in Fluoroscopic Images, April 2019, working paper or preprint.
    https://hal.archives-ouvertes.fr/hal-02072386
References in notes
  • 29R. C. Aster, B. Borchers, C. H. Thurber.
    Parameter estimation and inverse problems, Elsevier, 2018.

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