Section: Software

STSE, spatio-temporal simulation environment

Participant : Szymon Stoma.

The overall goal of this project is to provide a software platform gathering a set of open-source tools and workflows facilitating spatio-temporal simulations (preferably of biological systems) based on microscopy data. The framework currently contains modules to digitize, represent, analyze, and model spatial distributions of molecules in static and dynamic structures (e.g. growing). A strong accent is put on the experimental verification of biological models by actual, spatio-temporal data acquired using microscopy techniques. Project was initially started at Humboldt University Berlin and moved to Inria with its founder. Project webpage is: http://stse-software.org .