Section: Partnerships and Cooperations

International Initiatives

Inria Associate Teams

INTEGRATIVEBIOCHILE

• Title: Bioinformatics and mathematical methods for heterogeneous omics data

• Inria principal investigator: Anne Siegel

• International Partner (Institution - Laboratory - Researcher):

  • University of Chile (Chile) - Center for Mathematical Modeling - Alejandro Maass

• Duration: 2011 - 2013

• See also: http://www.irisa.fr/dyliss/public/EA/index.html

• IntegrativeBioChile is an Associate Team between Inria project-team "Dyliss" and the "Laboratory of Bioinformatics and Mathematics of the Genome" hosted at CMM at University of Chile. The Associated team is funded from 2011 to 2013. The project aims at developing bioinformatics and mathematical methods for heterogeneous omics data. Within this program, we funded long and short stay visitings in France.

Inria International Labs

The Dyliss team is strongly involved in the Inria CIRIC center, and the research line "Omics integrative center": the associated team "IntegrativeBioChile", the post-doc of S. Thiele and the co-supervised of A. Aravena contribute to reinforce the complementarity of both Chilean and French teams. In 2013, a workshop was organized in Chile to develop new French-Chilean collaboration within the framework of the CIRIC center. See Sec. 8.2.1 for details.

Participation In other International Programs

Argentina - MinCYT-Inria 2011-13

• Partner: Universidad Nacional de Cordoba, Grupo de Procesamiento de Lenguaje Natural (PLN), Argentina.

• Title: Modélisation linguistique de séquences génomiques par apprentissage de grammaires

• Financial support: MinCYT-Inria program 2011-13

The projects aims at developing new grammatical inference methods to learn automatically linguistic models of genomic sequences.

International joint supervision of PhD

• Title: Introduction des approches combinatoires dans des modèles probabilistes pour la découverte d'évènements de régulation d'un système biologique à partir de données hétérogènes [A. Aravena]

• Inira principal investigator: Anne Siegel

• International Partners (Institution - Laboratory - Researcher):

  • University of Chile (Chile) - Center of Mathematical Modelling - Alejandro Maass

• Duration: Jul 2011 - Dec 2013

• Title: Analyse automatisée et générique de réseaux métaboliques en nutrition [O. Abdou-Arbi]

• Inria principal investigator: Anne Siegel

• International Partner (Institution - Laboratory - Researcher):

  • University of Ouagadougou (Burkina Faso) - Department of mathematics - T. Tabsoba.

• Duration: October 2010 - September 2013

• Title: Applying logic programming to the construction of robust predictive and multi-scale models of bioleaching bacteria [S. Videla]

• Inria principal investigator: Anne Siegel

• International Partner (Institution - Laboratory - Researcher):

  • University of Postdam (Germany). Department of computer science. T. Schaub.

• Duration: October 2011 - September 2014