Section: Dissemination

Teaching - Supervision - Juries

Teaching

We have and we will go on having trained a group of good multi-disciplinary students both at the Master and PhD level. Being part of this community as a serious training group is obviously an asset. Our project is also very much involved in two major student programs in France: the Master Ami2b at Paris-Saclay (previously Bibs (Bioinformatique et Biostatistique) at Université Paris-Sud/École Polytechnique) and the parcours d’Approfondissement en Bioinformatique at École Polytechnique. We are also involved in a student partnership with McGill University (partenariat France Quebec offering French and Canadian students co-supervised internships (short term -3 to 6 months- or long term -part of the PhD studies-).

At Ecole Polytechnique, M. Régnier is in charge of M1 and M2. Most team members are teaching in this master

Beyond the plateau de Saclay, Y. Ponty taught 12h at the M2 level for University Pierre et Marie Curie in the BIM Master program.

Supervision

• HdR

  • Julie Bernauer, Geometric and statistical methods for the analysis and prediction of structural interactions between biomolecules, Université Paris-Sud XI, January 2015, Habilitation à diriger des recherches. https://tel.archives-ouvertes.fr/tel-01136261

• PhD

  • Daria Iakovishina, Detection of structural variants in tumoral genomes with a Bayesian approach, Ecole Polytechnique, November 2015. Encadrantes: Mireille Régnier and Valentina Boeva.

• PhD in progress

  • Mélanie Boudard, Game theory and stochastic learning for predicting the three- dimensional structure of large RNA molecules, Univ. Paris XI, Encadrant(e|s): D. Barth, J. Cohen and A. Denise.

  • Alice Heliou, Identification et caractérisation d’ARN circulaires dans des séquences NGS, Ecole Polytechnique, Encadrant(e|s): Mireille Régnier and Hubert Becker

  • Amélie Heliou, Game theory and conformation sampling for multi-scale and multi-body macromolecule docking, Ecole Polytechnique, Encadrant(e|s): Johanne Cohen

  • Vincent Le Gallic, Design de structures secondaires avec contraintes de séquences : une approche globale fondée sur les langages formels, Univ. Paris XI, Encadrant(e|s): Yann Ponty and Alain Denise.

  • Cécile Pereira, Nouvelles approches bioinformatiques pour l’étude à grande échelle de l’évolution des activités enzymatiques, Univ. Paris XI, Encadrant(e|s): Olivier Lespinet et Alain Denise.

  • Afaf Saaidi, Differential analysis of RNA SHAPE probing data, Ecole Polytechnique, Encadrants: Yann Ponty and Mireille Régnier.

  • Antoine Soulé, Evolutionary study of RNA-RNA interactions in yeast , Ecole Polytechnique, Encadrants: Jean-Marc Steyaert and J. Waldispuhl (U. McGill, Canada)

Juries

Yann, JMS, Philippe, MR

• Hiring committees

  • Chargé de Recherches,Inria , 2015, CRI Saclay Ile de France: M. Régnier

  • Ingénieur,Inria , 2015, CRI Grenoble Rhone-Alpes: Mireille Régnier

  • Research Scientists/Directors, CNRS , Theoretical Computer Science (section 6) and Interfaces of Life Sciences (CID 51), 24 positions in 2015: Y. Ponty

• PhD juries

  • Paul Dallaire, RNA Bioinformatics, Université de Montréal: Y. Ponty (External reviewer)

  • Magali Semeria, Comparative Genomics, Université Lyon I: Y. Ponty (Jury Member)

• HDR juries

  • J. Bernauer (Paris-Sud U.) : J.-M. Steyaert