CAPSID - 2015 - Annual activity report

CAPSID

CAPSID - 2015

Project-Team Capsid

Members

Overall Objectives

Computational Challenges in Structural Biology

Research Program

Classifying and Mining Protein Structures and Protein Interactions
Integrative Multi-Component Assembly and Modeling

Application Domains

Biomedical Knowledge Discovery
Prokaryotic Type IV Secretion Systems
G-protein Coupled Receptors

Highlights of the Year

New Software and Platforms

Kpax
KBDOCK
Hex
Sam
EC-DomainMiner
MD-Kmean
Protein-Marshmallow
Platforms

New Results

Annotating 3D Protein Domains
Large-Scale Analysis of 3D Protein Interactions
Predicting Drug Side Effects
Modeling a GPCR Receptor Complex
Modeling the Apelin Receptor
Identifying New Anti-Fungal Agents

Partnerships and Cooperations

Regional Initiatives
National Initiatives
International Initiatives
International Research Visitors

Dissemination

Promoting Scientific Activities
Teaching - Supervision - Juries
Popularization

Bibliography

Major publications
Publications of the year
References in notes

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2015 Project-Team Activity Report

CAPSID

Computational Algorithms for Protein Structures and Interactions

Research centre: Nancy - Grand Est

In partnership with: CNRS, Université de Lorraine

In collaboration with: Laboratoire lorrain de recherche en informatique et ses applications (LORIA)

Field: Digital Health, Biology and Earth

Theme: Computational Biology

Keywords:

Computer Science and Digital Science:

1.5.1. - Systems of systems
3.1.1. - Modeling, representation
3.2.2. - Knowledge extraction, cleaning
3.2.5. - Ontologies

Other Research Topics and Application Domains:

1. - Life sciences
1.1. - Biology
1.1.1. - Structural biology
1.1.8. - Evolutionnary biology
1.1.9. - Bioinformatics