Section: Dissemination

Promoting Scientific Activities

Scientific events selection

Member of the conference program committees

• CMSB (2015): Computational Methods on Systems Biology [A. Siegel]

• BBCC (2015): Bioinformatica e Biologia Computazionale in Campania [O. Dameron]

• SIIM (2015): Symposium sur l'Ingénierie des Informations Médicales [O. Dameron]

Journal

Member of the editorial boards

• Academic editor: Plos One [J. Bourdon]

Reviewer - Reviewing activities

• Journal of Mathematical Biology. Theorie des Sciences Informatiques. [A. Siegel]

• Theoretical Computer Science, Fundamenta Informaticae. [F. Coste]

• 2014 O. Dameron: Bioinformatics, Cancer informatics, Journal of Biomedical Informatics, Journal of Biomedical Semantics.

• 2015 O. Dameron: Journal of Biomedical Semantics (x3).

Invited talks

• A. Antoine-Lorquin Orthocis : Une base de données pour l'étude des facteurs de transcriptions. Identification in silico de gènes ciblés par un facteur de transcription donné. UMR MIA. AgroParisTech (Sep. 2015)

• M. Chevallier Systems biology : uses of the Mobyle and Galaxy plateforms. Bio-informatics day. e-Biogenouest and GRIOTE. (Avr. 2015).

• F. Coste Learning efficiently (local) substitutable context-free languages from text. XRCE seminar, Grenoble. (Jul. 2015)

• F. Coste Learning protein languages. Machine learning thematic trimester. CIMI, Toulouse. (Dec. 2015)

• O. Dameron Knowledge-based selection of candidate metabolic networks. CRC (équipe A Burgun). (Feb. 2015)

• C. Galiez Sequence-structure relationship in protein sequences and applications to sequence annotation. LBCQ (équipe A. Carbone), Paris. (Juil. 2015)

• C. Galiez Apprentissage de prédictions structurales depuis la séquence pour l'annotation fonctionnelle. LIRMM (équipe O. Gascuel), Montpellier. (Oct. 2015)

• C. Galiez Structural fragments : comparison, predictability from sequence and application to identification of viral proteins. MPI (équipe J. Söding), par Internet, Göttingen. (Dec. 2015)

• Y. Guitton Metabolic profiling and control hypothesis through kinetic accumulation or elimination of secondary metabolites associated with phycotoxins of filter-feeding bivalves RFMF 2015 (9. édition des Journées Scientifiques du Réseau Francophone de Métabolomique et Fluxomique ). Lille. June 2015.

• Y. Guitton L’annotation automatisée des analyses métabolomiques en LC-MS : un challenge relevé par la plate-forme Corsaire. Gen2Bio. Mars 2015.

• J. Laniau Combinatorial optimization methods to complete and analyse a metabolic network. Journée BIOSS. Nantes. Septembre 2015

• J. Laniau Combinatorial optimization methods to complete and analyse a metabolic network. Journée MOABI. Paris. Novembre 2015.

• V. Picard Asymptotic Analysis of Gillespie Algorithm under Steady-State Assumption. Advanced Lecture Course on Computational Systems Biology. Aussois (Apr. 2015)

• V. Picard Analyse stationnaire des réseaux de réactions : systèmes de contraintes en modélisation stochastique. Paris. Journées du groupe de travail bioss (Nov. 2015).

• A. Siegel Numeration, redundancy graphs and topological properties of fractals. Department of Mathematics. Université Paris Sud (Jan. 2015)

• A. Siegel Topological properties of generalized Rauzy fractals: which novel issues?. FAN numeration meeting. Admont, Austria. (Jun. 2015).

• A. Siegel Decidability problems for self-induced systems generated by a substitution?. Conference MCU'2015. North Cyprus. (Sept. 2015).

• A. Siegel Confronting knowledge networks on signaling networks with phosphoproteomics datasets using combinatorial optimization approaches. Departement of computer sciences. Frei Berlin University. (Oct. 2015).

• A. Siegel Data science and systems biology. Data science meeting. IRISA, Rennes (Nov. 2015).

Leadership within the scientific community

• Member of the steering committee of the International Conference on Grammatical Inference [F. Coste].

• The team was involved in the foundation of a national working group on the symbolic study of dynamical systems named bioss [web access] . The group gathers more 100 scientists, from computer science to biology. Three meetings were organized this year. The group is supported by two French National Research Networks: bioinformatics (GDR BIM : bioinformatique moléculaire) and informatics-mathematics (GDR IM : Informatique Mathématique). [A. Siegel]

Scientific expertise

• Scientific Advisory Board of GDR BIM " Molecular Bioinformatics"[J. Nicolas].

• Inria National evaluation board [A. Siegel]

• Member (nominated) CNU section 65 [O. Dameron]

• Member of the Operational Legal and Ethical Risk Assessment Committee (COERLE) at Inria [J. Nicolas].

• Recruitment committees: Professor (CRISTAL, Lille) [A. Siegel], Professor (IRHS, Angers) [A. Siegel], Inria junior researcher (Nice) [A. Siegel].

• Member of the IRISA laboratory council [F. Coste].

• Member of the Inria Rennes center council [A. Siegel].

• Scientific Advisory Board of Biogenouest [J. Bourdon, A. Siegel].

• Member of SCAS (Service Commun d'Action Sociale) of Univ. Rennes 1 [C. Belleannée].

• Member of CUMIR (Commission des Utilisateurs des Moyens Informatiques, Inria Rennes) [F. Coste].