Section: New Software and Platforms

HapCol

Functional Description

A fast and memory-efficient DP approach for haplotype assembly from long reads that works until 25x coverage, solves a constrained minimum error correction problem exactly.

• Participants: Paola Bonizzoni, Riccardo Dondi, Gunnar Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria

• Contact: Gunnar Klau, Nadia Pisanti, Paola Bonizzoni (not Inria)

• URL: http://hapcol.algolab.eu/