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New software
clogitLasso
Lasso Estimation of Conditional Logistic Regression Models for Case-Crossover and Matched Case-Control Studies
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Keywords: Classification , Statistics , Cluster , Machine learning , Regression
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Functional Description Fit a sequence of conditional logistic regression models with lasso, for small to large sized samples.
COVVSURF
Combination of Clustering Of Variables and Variable Selection Using Random Forests
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Keywords: Classification , Statistics , Cluster , Machine learning , Regression
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Functional Description This package implements a two stage strategy, where first we use ClustOfVar package to perform a clustering of variables and second we use VSURF package to select features (i.e. synthetic variables built in the first step).
NPflow
Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data
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Keywords: Bayesian estimation , Bioinformatics , Biostatistics
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Functional Description Dirichlet process mixture of multivariate normal, skew normal or skew t-distributions modeling oriented towards flow-cytometry data pre-processing applications.
tcgsaseq
Time-Course Gene Set Analysis for RNA-Seq Data
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Keywords: Genomics , Biostatistics , Statistical modeling , RNA-seq , Gene Set Analysis
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Functional Description Gene set analysis of longitudinal RNA-seq data with variance component score test accounting for data heteroscedasticity through precision weights.
CD4 Shiny
Reference curves for CD4 response to antiretroviral therapy in HiV infected patients
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Keywords: HIV infection, antiretroviral therapy, cd4 response, reference curves, quantile regression
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Functional Description References curves for CD4 response to antiretroviral therapy in HIV infected patients derived from large cohorts and estimated according to known factors associated with the response to antiretroviral therapy.