Section: New Software and Platforms

PADMet-utils

Keywords: Metabolic networks - Bioinformatics - Workflow - Omic data - Toolbox - Data management - LOD - Linked open data

Functional Description: The main concept underlying padmet-utils is to provide solutions that ensure the consistency, the internal standardization and the reconciliation of the information used within any workflow that combines several tools involving metabolic networks reconstruction or analysis.

News Of The Year: In 2017, Padmet-utils was enriched with a RDF export to allow the interoperability of the AuReMe workspace for the reconstruction of metabolic networks with the Askomics Tool for querying heterogeneous data. Padmet-utils was also extended to handle metabolic networks in the SBML3 format.

• Participants: Alejandro Maass, Meziane Aite and Anne Siegel

• Partner: University of Chile

• Contact: Anne Siegel

• URL: https://gitlab.inria.fr/maite/padmet-utils