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  • The Inria's Research Teams produce an annual Activity Report presenting their activities and their results of the year. These reports include the team members, the scientific program, the software developed by the team and the new results of the year. The report also describes the grants, contracts and the activities of dissemination and teaching. Finally, the report gives the list of publications of the year.

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Section: New Software and Platforms

AskOmics

Convert tabulated data into RDF and create SPARQL queries intuitively and "on the fly".

Keywords: RDF - SPARQL - Querying - Graph - LOD - Linked open data

Functional Description: AskOmics aims at bridging the gap between end user data and the Linked (Open) Data cloud. It allows heterogeneous bioinformatics data (formatted as tabular files) to be loaded in a RDF triplestore and then be transparently and interactively queried. AskOmics is made of three software blocks: (1) a web interface for data import, allowing the creation of a local triplestore from user's datasheets and standard data, (2) an interactive web interface allowing "à la carte" query-building, (3) a server performing interactions with local and distant triplestores (queries execution, management of users parameters).

News Of The Year: (1) Improvements: Bugfixes and ui improvements in response to user feedback. (2) Versionning: Regular development cycle: a new version of AskOmics will be available every 3 months (currently 18.10, next 19.01) (3) Deployment: Deployment has been improved with docker and docker-compose. Virtual machine images are available on genostack to easy deploy AskOmics and Virtuoso (4) Federation: AskOmics can perform federated queries on mutliple triplestores, including other AskOmics endpoints, but also external endpoints like uniprot or dbpedia. (still in development)

  • Authors: Charles Bettembourg, Xavier Garnier, Anthony Bretaudeau, Fabrice Legeai, Olivier Dameron, Olivier Filangi and Yvanne Chaussin

  • Partners: Université de Rennes 1 - CNRS - INRA

  • Contact: Olivier Dameron

  • URL: https://github.com/askomics/askomics