Section: Dissemination

Promoting Scientific Activities

Scientific Events: Selection

Member of the Conference Program Committees

• 12th international conference Semantic Web and Tools for Healthcare and Life Sciences (SWAT4HCLS) [O. Dameron]

• 19th NETTAB-BBCC joint international conference [E. Becker, O. Dameron]

• CSBio2019: The 10th International Conference on Computational Systems-Biology and Bioinformatics [A. Siegel]

• WBC@ICML 2019, ICML 2019 Workshop on Computational Biology [A. Siegel]

• CP'2019 25th International Conference on Principles and Practice of Constraint Programming [A. Siegel]

• Journée IA et santé, organisée par l'AFIA (Assoc. Fr. pour l'Intelligence Artificielle) et l'AIM (Assoc. Fr. d'Informatique Médicale) [O. Dameron]

• JOBIM 2019 [A. Siegel]

Reviewer

• Semantic Web and Tools for Healthcare and Life Sciences: O. Dameron

• Journée IA et santé: O. Dameron

Jury member

• Jury of interpretability prize of Sigmorphon shared task 2019: F. Coste

Journal

Member of the Editorial Boards

• Journal of Biomedical Semantics [O. Dameron]

• Editor of special issue in grammatical inference of Machine Learning: [F. Coste]

Reviewer - Reviewing Activities

• Bioinformatics [A. Siegel, E. Becker]

• Biosystems [A. Siegel]

• Briefings in Bioinformatics [O. Dameron]

• IEEE/ACM TCBB [A. Siegel]

• Neuroinformatics [O. Dameron]

• Machine Learning [F. Coste]

• PLoS Computational biology [A. Siegel]

Peer Community in Genomics

In addition to the traditional publishing activities, Dyliss has also been active in the alternative approach “Peer Community in” (PCI). It is is a non-profit community of researchers who review and recommend for free (we also do it for free with traditional journals and conferences anyway), unpublished preprints in their field (i.e. unpublished articles deposited on open online archives like arXiv.org and bioRxiv.org). To a lesser extent, they may also recommend articles already published in journals.

Denis Tagu has been one of the creators of Peer Community in Genomics (PCI Genomics [More details]), which has been launched in October 2019. The scope of this PCI encompasses all aspects of genomics (structural genomics, functional genomics, epigenomics, evolutionary genomics, population genomics, proteomics, bioinformatics) dealing with every type of organisms (viruses, bacteria, fungi, plants, animals,...) as well as metagenomes.

• Denis Tagu is a manager

• Olivier Dameron is a recommender

Invited Talks

• Dusseldorf, Quantitative Theoretical Biology group, Heinrich Heine Universitat, february 2019 [C. Frioux]

• Colloquium J. Morgenstern (Nice), february 2019 [A. Siegel]

• IGNITE International Training Network Spring school [O. Dameron]

• Colloque d'ouverture 50 ans du Laboratoire Jacques-Louis Lions, Roscoff, march 2019 [A. Siegel]

• CNRS GdR MaDics, june 2019 [O. Dameron]

• Boolean Weekend, Burlington, US, april 2019 [A. Siegel]

• Department of Plant Science, University of Oxford, may 2019 [C. Frioux]

• Quadram Institute, may 2019 [C. Frioux]

• Network analysis to elucidate natural system dynamics, diversity and performance, CECAM Conference, Lyon, may 2019 [A. Siegel]

• Séminaire IMBAS Inra Toulouse, june 2019 [A. Siegel]

• CNRS GdR BIM, november 2019 [O. Dameron]

• The 10th International Conference on Computational Systems-Biology and Bioinformatics (CSBio 2019) [N. Théret] Nice (France) December 4 to 7, 2019

Leadership within the Scientific Community

• Member of the steering committee of the International Conference on Grammatical Inference [F. Coste]

Scientific Expertise

International expertise

• Luxembourg, FNR. Core program [A. Siegel]

Prospective working groups

• "Big & Open Data en recherche à l’horizon 2040" foresight working group of PROSPER network [F. Coste]

National responsibilities

• Institutional boards for the recruitment and evaluation of researchers.

  • National Council of Universities, section 65 [O. Dameron, nominated member].

• Recruitment committees.

  • Inria Senior Researchers [national committee, A. Siegel]

  • Assistant professor in Mathematics for Biology, section 26, Univ Rennes 1 [E. Becker]

National scientific boards

• Animation of the Systems Biology working group of national infrastructure GDR IM and GDR BIM [A. Siegel].

• Board of directors of the French Society for biology of the extracellular matrix [N. Théret].

Local responsibilities

• Scientific Advisory Board of Biogenouest [N. Théret]

• Delegate to research integrity at the University of Rennes 1 [N. Théret]

• Head of the "Data and Knowledge Managment" Department (6 teams) of the IRISA lab [A. Siegel, since june 2019]

• IRISA laboratory (computer science department of Univ. Rennes 1) council [A. Siegel, until june 2019]

• Member of the Inria Rennes center council [J. Got]

• Responsability of the IRISA laboratory "Health-biology" cross-cutting axis [O. Dameron, until June 2019] [More details]

• Social commitee of Univ. Rennes 1 [C. Belleannée]

• Scientific committee of Univ. Rennes 1 school of medicine [O. Dameron, A. Siegel].

• Emergency aid commission of Univ. Rennes 1 $\&$ Rennes2 [C. Belleannée]

Research Administration

Inria Instances

• Inria National evaluation board [A. Siegel, nominated member].

• Equality and diversity Committee, Inria - Responsible of the working group focusing on recruitment procedures [A. Siegel].

CNRS

• Chargée de mission "bioinformatique" at INS2I-CNRS (Institute for Computer Science of CNRS) [A. Siegel, nominated member].

Inria local instances

• Gender equality commission, IRISA & Inria Rennes [A. Siegel, coordinator]

• CUMI (Comission des utilisateurs des moyens informatiques) of Inria Rennes [F. Coste]

• Inria Rennes PhD recruitment (CORDIs) [C. Belleannée]