Bibliography

Major publications by the team in recent years

1E. Arian, A. Iollo.

Analytic Hessian Derivation for the quasi-one-dimensional Euler Equations, in: Journal of Computational Physics, 2009, vol. 228, n^o 2, p. 476–490, doi:10.1016/j.jcp.2008.09.021.

http://hal.inria.fr/inria-00332853/en/
2M. Bergmann, C.-H. Bruneau, A. Iollo.

Enablers for robust POD models, in: Journal of Computational Physics, 2009, vol. 228, n^o 2, p. 516–538, doi:10.1016/j.jcp.2008.09.024.

http://hal.inria.fr/inria-00338203/en/
3M. Bergmann, A. Iollo.

Modeling and simulation of fish like swimming, in: Journal of Computational Physics, 2011, vol. 230, n^o 2, p. 329-348. [ DOI : 10.1016/j.jcp.2010.09.017 ]

http://hal.inria.fr/inria-00546330/en
4F. Billy, B. Ribba, O. Saut, H. Morre-Trouilhet, T. Colin, D. Bresch, J.-P. Boissel, E. Grenier, J.-P. Flandrois.

A pharmacologically based multiscale mathematical model of angiogenesis and its use in investigating the efficacy of a new cancer treatment strategy., in: Journal of Theoretical Biology, 2009, vol. 260, n^o 4, p. 545-62.

http://hal.inria.fr/inria-00440447/en/
5D. Bresch, C. Choquet, L. Chupin, T. Colin, M. Gisclon.

Roughness-Induced Effect at Main order on the Reynolds Approximation, in: SIAM multiscale, 2010, To appear.

http://hal.archives-ouvertes.fr/hal-00385963/en/
6C.-H. Bruneau, F. Chantalat, C. Galusinski, A. Iollo.

Level-Set, Penalization and Cartesian Meshes: a Paradigm for Inverse Problems and Optimal Design, in: Journal of Computational Physics, 2009, vol. 228, n^o 17, p. 6291–6315, doi:10.1016/j.jcp.2009.05.017.

http://hal.archives-ouvertes.fr/hal-00385460/en/
7I. Ciuperca, M. Jai, C. Poignard.

Approximate Transmission Conditions through a rough thin layer. The case of the periodic roughness, in: European Journal of Applied Mathematics, 2010, vol. 21, n^o 1, p. 51-75.

http://hal.inria.fr/inria-00356124/en
8M. Colin, D. Lannes.

Short pulses approximation in dispersive media, in: SIAM Journal on Mathematical Analysis, 2009, vol. 41, n^o 2, p. 708–732.

http://www.math.u-bordeaux.fr/~mcolin/liste-prepub.html
9E. Creusé, A. Giovannini, I. Mortazavi.

Vortex simulation of active control strategies for transitional backward-facing step flows, in: Computers and Fluids, 2009, vol. 38, n^o 7, p. 1348–1360, doi: 10.1016/j.compfluid.2008.01.036.

http://www.math.u-bordeaux1.fr/~mortaz/
10J. Dambrine, P. Hoch, R. Kuate, J. Loheac, J. Metral, B. Rebourcet, L. Weynans.

Robust numerical schemes for anisotropic diffusion problems, a first step for turbulence modeling in Lagrangian hydrodynamics, in: ESAIM: Proceedings, 2009, vol. 28, p. 80–99, doi: 10.1051/proc/2009040.

http://hal.inria.fr/inria-00443523/en/

Publications of the year

Doctoral Dissertations and Habilitation Theses

11M. Colin.

Etude de quelques problèmes issus de la physique des plasmas et de la mécanique des fluides., Université Sciences et Technologies - Bordeaux I, November 2011, Habilitation à Diriger des Recherches.

http://hal.inria.fr/tel-00664219/en
12J.-B. Lagaert.

Modélisation de la croissance tumorale : estimation de paramètres d'un modèle de croissance et introduction d'un modèle spécifique aux gliomes de tout grade, Université Sciences et Technologies - Bordeaux I, September 2011.

http://hal.inria.fr/tel-00652366/en
13D. Lombardi.

Problèmes inverses pour les modèles de croissance tumorale, Université Sciences et Technologies - Bordeaux I, September 2011.
14D. Thanoon.

Plateforme de calcul pour le cancer du sein, Université Sciences et Technologies - Bordeaux I and Houston university, Texas, USA, November 2011.

Articles in International Peer-Reviewed Journal

15H. Beaugendre, S. Huberson, I. Mortazavi.

Coupling particle sets of contours and streamline methods for solving convection problems, in: Applied Mathematics Letters, January 2012, vol. 25, p. 11-19. [ DOI : 10.1016/j.aml.2011.06.031 ]

http://hal.inria.fr/hal-00653253/en
16H. Beaugendre, F. Morency, F. Gallizio, S. Laurens.

Computation of Ice Shedding Trajectories Using Cartesian Grids, Penalization, and Level Sets, in: Modelling and Simulation in Engineering, 2011, vol. 2011, p. 1-15. [ DOI : 10.1155/2011/274947 ]

http://hal.inria.fr/hal-00653224/en
17M. Bergmann, A. Iollo.

Modeling and simulation of fish like swimming, in: Journal of Computational Physics, 2011, vol. 230, n^o 2, p. 329-348. [ DOI : 10.1016/j.jcp.2010.09.017 ]

http://hal.inria.fr/inria-00546330/en
18T. Colin, J. Dambrine, M. Colin.

Validity of the Reynolds equation for miscible fluids in microchannels, in: DCDS, May 2012.

http://hal.inria.fr/hal-00656235/en
19M. Colin, M. Ohta.

Bifurcation from semi-trivial standing waves and ground states for a system of nonlinear Schrodinger equations, in: SIAM Journal on Mathematical Analysis, March 2012.

http://hal.inria.fr/hal-00656237/en
20M. Durufle, V. Péron, C. Poignard.

Time-harmonic Maxwell equations in biological cells. The differential form formalism to treat the thin layer, in: Confluentes Mathematici, 2011, vol. 3, n^o 2, p. 325-357. [ DOI : 10.1142/S1793744211000345 ]

http://hal.inria.fr/hal-00651510/en
21L. Krähenbühl, F. Buret, R. Perrussel, D. Voyer, P. Dular, V. Péron, C. Poignard.

Numerical treatment of rounded and sharp corners in the modeling of 2D electrostatic fields, in: journal of microwaves, optoelectronics and electromagnetic applications, June 2011, vol. 10, n^o 1, p. 66-81.

http://hal.inria.fr/hal-00515107/en
22E. Lombardi, M. Bergmann, S. Camarri, A. Iollo.

Low-order models: optimal sampling and linearized control strategies, in: Journal Européen des Systèmes Automatisés, 2011.

http://hal.inria.fr/hal-00655888/en
23D. Lombardi, A. Iollo, T. Colin, O. Saut.

Inverse Problems in tumor growth modeling by means of semiempirical eigenfunctions, in: Mathematical Models and Methods in Applied Sciences, 2012, 1 p.

http://hal.inria.fr/hal-00664723/en
24D. Lombardi, A. Iollo.

A Lagrangian Scheme for the Solution of the Optimal Mass Transfer Problem, in: Journal of Computational Physics, May 2011, vol. 230, 3430:3442 p.

http://hal.inria.fr/hal-00664718/en
25C. Poignard.

Explicit characterization of the polarization tensor for rough thin layers, in: European Journal of Applied Mathematics, 2011, vol. 22, p. 1-6. [ DOI : 10.1017/S0956792510000252 ]

http://hal.inria.fr/inria-00554686/en
26C. Poignard, A. Silve, F. Campion, L. Mir, O. Saut, L. Schwartz.

Ion flux, transmembrane potential, and osmotic stabilization: A new electrophysiological dynamic model for Eukaryotic cells, in: European Biophysics Journal: EBJ, January 2011, vol. 40, n^o 3. [ DOI : 10.1007/s00249-010-0641-8 ]

http://hal.inria.fr/inria-00477372/en
27Y. L. Xiong, C.-H. Bruneau, H. Kellay.

Direct numerical simulation of 2D channel flows in the presence of polymers, in: Europhysics Letters, 2011, vol. 95.

http://hal.inria.fr/hal-00664966/en
28Y. L. Xiong, C.-H. Bruneau, H. Kellay.

Direct numerical simulations of 2D channel flows in the presence of polymers, in: EPL, September 2011, vol. 95, 64003 (6) p.

http://hal.inria.fr/hal-00635053/en

International Conferences with Proceedings

29C.-H. Bruneau, E. Creusé, D. Depeyras, P. Gilliéron, I. Mortazavi.

Numerical simulation and control of the 3D flow around Ahmed body, in: 6th ICCFD, St Petersburg, Russian Federation, 2011.

http://hal.inria.fr/inria-00547249/en

Conferences without Proceedings

30R. Abgrall, H. Beaugendre, C. Dobrzynski.

Unstructured Anisotropic Mesh Adaptation using Level Sets and Penalization Techniques, in: ICIAM 2011, Vancouver, Canada, July 2011.

http://hal.inria.fr/hal-00653248/en
31H. Beaugendre, C. Wervaecke, B. Nkonga.

SUPG Formulation for the 3D Compressible Coupled Navier-Stokes and S-A Equations, in: ICIAM 2011, Vancouver, Canada, July 2011.

http://hal.inria.fr/hal-00653242/en

Scientific Books (or Scientific Book chapters)

32D. Lombardi, T. Colin, A. Iollo, O. Saut, F. Bonichon, J. Palussière.

Some models for the prediction of tumor growth: general framework and applications to metastases in the lung, in: Computational Surgery, Springer, 2012, 1 p.

http://hal.inria.fr/hal-00664725/en

Internal Reports

33M. Cisternino, L. Weynans.

A parallel second order Cartesian method for elliptic interface problems, INRIA, March 2011, n^o RR-7573.

http://hal.inria.fr/inria-00577874/en
34Y. Gorsse, A. Iollo, H. Telib, L. Weynans.

A simple second order cartesian scheme for compressible Euler flows, INRIA, October 2011, n^o RR-7773.

http://hal.inria.fr/inria-00633543/en
35A. Iollo, T. Milcent, H. Telib.

A sharp contact discontinuity scheme for multimaterial models, INRIA, February 2011, n^o RR-7534.

http://hal.inria.fr/inria-00565339/en
36T. Milcent.

Shape derivative of the Willmore functional and applications to equilibrium shapes of vesicles, INRIA, February 2011, n^o RR-7539.

http://hal.inria.fr/inria-00565403/en
37C. Poignard.

Boundary Layer Correctors and Generalized Polarization Tensor for Periodic Rough Thin Layers. A Review for the Conductivity Problem, INRIA, April 2011, n^o RR-7603.

http://hal.inria.fr/inria-00586103/en
38L. Weynans, A. Magni.

Consistency, accuracy and entropic behaviour of remeshed particle methods, INRIA, October 2011, n^o RR-7759.

http://hal.inria.fr/inria-00631076/en

Other Publications

39F. Buret, M. Dauge, P. Dular, L. Krähenbühl, V. Péron, R. Perrussel, C. Poignard, D. Voyer.

Eddy currents and corner singularities, 2011, To appear in IEEE Trans on Mag..

http://hal.inria.fr/inria-00614033/en
40M. Gander, L. Halpern, K. Santugini-Repiquet.

Continuous Analysis of the Additive Schwarz Method: a Stable Decomposition in $H^{1}$ , 2011.

http://hal.inria.fr/hal-00462006/en
41M. Gander, L. Halpern, K. Santugini-Repiquet.

Non shape regular domain decompositions: an analysis using a stable decomposition in $H_0^{1}$ , 2011.

http://hal.inria.fr/hal-00607043/en
42K. Santugini-Repiquet.

Homogenization at different linear scales, bounded martingales and the Two-Scale Shuffle limit, 2011.

http://hal.inria.fr/hal-00621265/en

References in notes

43D. Ambrosi, L. Preziosi.

On the closure of mass balance models for tumor growth, in: Mathematical Models and Methods in Applied Sciences, 2002, vol. 12, p. 737–754.
44P. Angot, C.-H. Bruneau, P. Fabrie.

A penalization method to take into account obstacles in an incompressible flow, in: Num. Math., 1999, vol. 81, n^o 4, p. 497–520.
45S. Benito.

Modélisation et simulation du comportement mécanique des milieux plastiques mous : mousses liquides et émulsions, École doctorale de Mathématiques et d'informatique de Bordeaux, Nov. 2009.
46C.-H. Bruneau, D. Depeyras, P. Gillieron, I. Mortazavi.

Passive and active control around Ahmed Body, in: EDRFCM, France, 2008.

http://hal.archives-ouvertes.fr/hal-00282806/en/
47C.-H. Bruneau, P. Gillieron, I. Mortazavi.

Passive control around the two dimensional square back Ahmed body using porous devices, in: Journal of Fluids Engineering, 2008, vol. 130, n^o 6, doi: 10.1115/1.2917423.

http://hal.archives-ouvertes.fr/hal-00282111/en/
48C.-H. Bruneau, I. Mortazavi.

Passive control of bluff body flows using porous media, in: Int. J. for Num. Meth. in Fluids, 2004, vol. 56.
49C.-H. Bruneau, I. Mortazavi.

Control of vortex shedding around a pipe section using a porous sheet, in: Int. J. Offshore and Polar Eng., 2006, vol. 16, n^o 2.
50C.-H. Bruneau, I. Mortazavi.

Numerical modelling and passive flow control using porous media, in: Computers and Fluids, 2008, vol. 37, n^o 5, p. 488–498, doi:10.1016/j.compfluid.2007.07.001.

http://hal.archives-ouvertes.fr/hal-00282126/en/
51C.-H. Bruneau, I. Mortazavi.

Numerical Modelling of Porous-Fluid Flows Using the Penalisation Method, in: Scaling Up and Modeling for Transport and Flow in Porous Media, Dubrovnik, Croatia, 2008.

http://www.math.u-bordeaux1.fr/~mortaz/
52C.-H. Bruneau, M. Saad.

The 2D lid-driven cavity problem revisited, in: Computers & Fluids, 2006, vol. 35, n^o 3.
53A. Bunyakin, S. Chernyshenko, G. Stepanov.

Inviscid Batchelor-model flow past an aerofoil with a vortex trapped in a cavity, in: J. Fluid Mech., 1996, vol. 323, p. 367–376.
54F. Buret, N. Faure, L. Nicolas, R. Perrussel, C. Poignard.

Numerical studies on the effect of electric pulses on an egg-shaped cell with a spherical nucleus, INRIA, April 2010, n^o RR-7270.

http://hal.inria.fr/inria-00477495/en
55F. Chantalat, C.-H. Bruneau, C. Galusinski, A. Iollo.

Level-Set and Adjoint-Based Optimization Methods For Inverse Problems, in: 6th International Congress on Industrial and Applied Mathematics, 2007.
56F. Chantalat.

Méthodes level-set et de pénalisation pour l'optimisation et le contrôle d'écoulements, École doctorale de Mathématiques et d'informatique de Bordeaux, Jul. 2009.

http://ori-oai.u-bordeaux1.fr/pdf/2009/CHANTALAT_FREDERIC_2009.pdf
57R. Chassagne.

Modélisation des processus biogéochimiques dans les sédiments variablement saturés soumis au forccage de la marée, École doctorale des sciences et environnements, Spécialité : Biogéochimie et Ecosystèmes, université Bordeaux 1, Oct. 2010.
58N. Cindea, B. Fabrèges, F. De Gournay, C. Poignard.

Optimal placement of electrodes in an electroporation process, in: ESAIM: Proceedings, August 2010, vol. 30.

http://hal.inria.fr/inria-00544874/en
59M. Colin, T. Colin, K. Santugini-Repiquet.

Rheologic modelization of a mixed nanotube-polymer fluid, in: Conference in honour of E. Hairer's 60th birthday, Geneva, Switzerland, JUNE 2009.
60G.-H. Cottet, B. Michaux, S. Ossia, G. VanderLinden.

A comparison of spectral and vortex methods in three-dimensional incompressible flows, in: J. Comp. Phys., 2002, vol. 175.
61J. Dambrine.

Etude du mélange de fluides complexes en microcanaux, École doctorale de Mathématiques et d'informatique de Bordeaux, Dec. 2009.
62D. Depeyras.

Contrôles actifs et passifs appliqués à l'aérodynamique automobile, École doctorale de Mathématiques et d'informatique de Bordeaux, Nov. 2009.

http://ori-oai.u-bordeaux1.fr/pdf/2009/DEPEYRAS_DELPHINE_2009.pdf
63P. Fischer, C.-H. Bruneau, H. Kellay.

Multiresolution analysis for 2D turbulence. Part 2: a physical interpretation, in: Discr. Cont. Dyn. Systems - série B, 2007, vol. 7, n^o 4.
64B. Galletti, C.-H. Bruneau, L. Zannetti, A. Iollo.

Low-order modelling of laminar flow regimes past a confined square cylinder, in: J. Fluid Mech., 2004, vol. 503, p. 161–170.
65C. Galusinski, P. Vigneaux.

Level set method and stability condition for curvature-driven flows, in: CRAS, 2007, submitted.
66H. Greenspan.

Models for the Growth of a Solid Tumor by diffusion, in: Stud Appl Math, 1972, vol. 4, n^o LI, p. 317–340.
67H. Greenspan.

On the growth and stability of cell cultures and solid tumors, in: J Theor Biol, 1976, vol. 56, p. 229–242.
68P. Holmes, J. L. Lumley, G. Berkooz.

Turbulence, Coherent Structures, Dynamical Systems and Symmetry, Cambridge Monographs on Mechanics, 1996.
69A. Iollo, M. Ferlauto, L. Zannetti.

An aerodynamic optimization method based on the inverse problem adjoint equations, in: Journal of Computational Physics, 2001, vol. 173, n^o 1.
70L. Mir, F. Glass, G. Sersa, J. Teissié, C. Domenge, D. Miklavcic, M. Jaroszeski, S. Orlowski, D. Reintgen, Z. Rudolf, M. Belehradek, R. Gilbert, M. Rols, J. Belehradek, J. Bachaud, R. DeConti, B. Stabuc, P. Coninx, M. Cemazar, R. Heller.

Effective treatment of cutaneous and subcutaneous malignant tumors by electrochemotherapy, in: Br. J. of Cancer, 1998, vol. 77, p. 2336–2342.
71I. Mortazavi, G.-H. Cottet, F. Gallizio, A. Magni.

A vortex immersed boundary method for bluff-body flows, in: ASME Summer meeting - Symposium on Development and Applications of Immersed Boundary Methods, Canada Montreal, ASME, 2010.

http://hal.inria.fr/inria-00554395/en
72I. Mortazavi.

Numerical simulation of active and passive control strategies for vortex flows., in: Second workshop on the flow control and reduced order models, France TOULOUSE, C. Airiau & J.P. Raymond, 2008.

http://hal.inria.fr/inria-00346981/en/
73G. Ottino.

Two approaches to the study of detached flows, École doctorale de Mathématiques et d'informatique de Bordeaux, Apr. 2009.

http://ori-oai.u-bordeaux1.fr/pdf/2009/OTTINO_GABRIELE_2009.pdf
74V. Péron, C. Poignard.

Approximate transmission conditions for time-harmonic Maxwell equations in a domain with thin layer, INRIA, 2008, RR-6775.

http://hal.inria.fr/inria-00347971/en/
75B. Ribba, T. Colin, S. Schnell.

A multi-scale mathematical model of cancer growth and radiotherapy efficacy: The role of cell cycle regulation in response to irradiation, in: Theoretical Biology and Medical Modeling, 2006, vol. 3, n^o 7.
76B. Ribba, O. Saut, T. Colin, D. Bresch, E. Grenier, J.-P. Boissel.

A multiscale mathematical model of avascular tumor growth to investigate the therapeutic benefit of anti-invasive agents, in: Journal of Theoretical Biology, 2006, vol. 243, p. 532–541.
77S. Tancogne.

Calcul numérique et Stabilité d'écoulements diphasiques tridimensionnels en Microfluidique, École doctorale de Mathématiques et d'informatique de Bordeaux, Dec. 2007.
78H. Telib, A. Iollo, L. Zannetti.

Modeling and optimization of a propeller by means of inverse problems, in: Third international Conference in Inverse Problems: Modeling and Simulation, Oludeniz (Fethiye, Mugla), 2006, May 29 - June 02, Turkey.
79D. Venturi, G. E. Karniadakis.

Gappy data and reconstruction procedures for flow past a cylinder, in: J. Fluid Mech., 2004, vol. 519, p. 315–336.
80P. Vigneaux.

Méthodes Level Set pour des problèmes d'interface en microfluidique, Université Bordeaux 1, École doctorale de Mathématiques et d'informatique de Bordeaux, Dec. 2007.
81J. Weller.

Réduction de modèle par identification de système et application au contrôle du sillage d'un cylindre, École doctorale de Mathématiques et d'informatique de Bordeaux, Jan. 2009.

http://ori-oai.u-bordeaux1.fr/pdf/2009/WELLER_JESSIE_2009.pdf
82C. Wervaecke.

Simulation d'écoulements turbulents compressibles par une méthode éléments finis stabilisée, École doctorale de Mathématiques appliquées et calcul scientifique, Université bordeaux 1., Dec. 2010.
83K. E. Willcox.

Unsteady flow sensing and estimation via the gappy proper orthogonal decomposition, in: Computers and Fluids, 2006, vol. 35.
84Y. L. Xiang.

Analyse par simulation numérique de la réduction de la trainée et des caractéristiques d'écoulements bidimensionnels par l'ajout de polymères en solution, École doctorale de Mathématiques appliquées et calcul scientifique, Université bordeaux 1., Dec. 2010.

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