Bibliography

Major publications by the team in recent years

1J. Allard, H. Courtecuisse, F. Faure.

Implicit FEM Solver on GPU for Interactive Deformation Simulation, in: GPU Computing Gems Jade Edition, NVIDIA/Elsevier, October 2011, chap. 21.
2J. Allard, F. Faure, H. Courtecuisse, F. Falipou, C. Duriez, P. G. Kry.

Volume Contact Constraints at Arbitrary Resolution, in: ACM Transactions on Graphics (Proceedings of SIGGRAPH 2010), August 2010, vol. 29(3).

http://www.sofa-framework.org/projects/ldi
3S. Cotin, H. Delingette, N. Ayache.

Real-Time Elastic Deformations of Soft Tissues for Surgery Simulation, in: IEEE Transactions on Visualization and Computer Graphics, 1999, vol. 5, n^o 1, p. 62–73.
4J. Dequidt, J. Lenoir, S. Cotin.

: Interactive Contacts Resolution Using Smooth Surface Representation, in: Proc. Medical Image Computing and Computer-Assisted Interventions (MICCAI), 2007, p. 850-857.
5J. Dequidt, M. Marchal, C. Duriez, S. Cotin.

Interactive Simulation of Embolization Coils: Modeling and Experimental Validation., in: Medical Image Computing and Computer Assisted Intervention (MICCAI), 2008, p. 695-702.
6C. Duriez, S. Cotin, J. Lenoir, P. F. Neumann.

New Approaches to Catheter Navigation for Interventional Radiology Simulation, in: Computer Aided Surgery, 2006, vol. 11, p. 300-308.
7C. Duriez, F. Dubois, A. Kheddar, C. Andriot.

Realistic Haptic Rendering of Interacting Deformable Objects in Virtual Environments, in: IEEE Transactions on Visualization and Computer Graphics, 2006, vol. 12, n^o 1, p. 36–47.

http://dx.doi.org/10.1109/TVCG.2006.13
8A. Kerdok, S. Cotin, M. Ottensmeyer, A. Galea, R. Howe, S. Dawson.

Truth Cube: Establishing Physical Standards for Real-Time Soft Tissue Simulation, in: Medical Image Analysis, September 2003, vol. 7, n^o 3.
9V. Luboz, X. Wu, K. Krissian, C. Westin, R. Kikinis, S. Cotin, S. Dawson.

A segmentation and reconstruction technique for 3D vascular structures, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), 2005, p. 43-50.
10Y. Wei, S. Cotin, F. Le, J. Allard, P. Chunhuong.

Toward Real-time Simulation of Blood-Coil Interaction during Aneurysm Embolization, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), 2009.

Publications of the year

Doctoral Dissertations and Habilitation Theses

11H. Courtecuisse.

Nouvelles architectures parallèles pour simulations interactives médicales, Université des Sciences et Technologies de Lille, December 2011.

Articles in International Peer-Reviewed Journal

12I. Peterlík, M. Nouicer, C. Duriez, S. Cotin, A. Kheddar.

Constraint-Based Haptic Rendering of Multirate Compliant Mechanisms, in: IEEE Transactions on Haptics, 2011, vol. 4, p. 175-187.

http://doi.ieeecomputersociety.org/10.1109/TOH.2011.41
13Y. Wei, S. Cotin, J. Allard, L. Fang, C. Pan, S. Ma.

Interactive Blood-Coil Simulation in Real-time during Aneurysm Embolization, in: Computers & Graphics, April 2011, vol. 35, n^o 2, p. 422–430, Special issue on Visual Computing for Biology and Medicine. [ DOI : 10.1016/j.cag.2011.01.010 ]

http://codrt.fr/allardj/pub/2011/WCAFPM11
14X. Wu, V. Luboz, K. Krissian, S. Cotin, S. Dawson.

Segmentation and reconstruction of vascular structures for 3D real-time simulation, in: Medical Image Analysis, 2011, vol. 15, n^o 1, p. 22–34. [ DOI : 10.1016/j.media.2010.06.006 ]

http://www.sciencedirect.com/science/article/pii/S1361841510000691

International Conferences with Proceedings

15J. Allard, H. Courtecuisse, F. Faure.

Implicit FEM and Fluid Coupling on GPU for Interactive Multiphysics Simulation, in: SIGGRAPH Talks, August 2011.

http://www.siggraph.org/s2011/for_attendees/talks/sessions/127
16A. Bilger, J. Dequidt, C. Duriez, S. Cotin.

Biomechanical simulation of electrode migration for deep brain stimulation, in: MICCAI 2011, Part 1, LNCS, Springer, September 2011, vol. 6891, p. 339–346.

http://dl.acm.org/citation.cfm?id=2044656.2044704
17H. Courtecuisse, J. Allard, C. Duriez, S. Cotin.

Preconditioner-Based Contact Response and Application to Cataract Surgery, in: MICCAI 2011, Part 1, LNCS, Springer, September 2011, vol. 6891, p. 315–322.

http://codrt.fr/allardj/pub/2011/CADC11
18I. Peterlík, C. Duriez, S. Cotin.

Asynchronous haptic simulation of contacting deformable objects with variable stiffness, in: IROS, 2011, p. 2608-2613.

Scientific Books (or Scientific Book chapters)

19J. Allard, H. Courtecuisse, F. Faure.

Implicit FEM Solver on GPU for Interactive Deformation Simulation, in: GPU Computing Gems Jade Edition, W.-m. W. Hwu (editor), NVIDIA/Elsevier, October 2011, chap. 21.
20F. Faure, C. Duriez, H. Delingette, J. Allard, B. Gilles, S. Marchesseau, H. Talbot, H. Courtecuisse, G. Bousquet, I. Peterlík, S. Cotin.

SOFA, a Multi-Model Framework for Interactive Physical Simulation, in: Soft Tissue Biomechanical Modeling for Computer Assisted Surgery, Y. Payan (editor), Springer Verlag, 2012, chap. 12, to appear.

Other Publications

21H. Courtecuisse, J. Allard, S. Cotin, L. Soler.

GPU-based Interactive Simulation of Liver Resection, August 2011, SIGGRAPH 2011 Real Time Live!.

http://www.siggraph.org/s2011/content/gpu-based-interactive-simulation-liver-resection
22E. Dumortier, S. Cotin, J. Dequidt, J.-F. Rouland.

A Prototype of Simulation System for Cataract Surgery Training, 2011, 15th European Society of Cataract and Refractive Surgeons Winter Meeting.
23E. Dumortier, S. Cotin, J. Dequidt, J.-F. Rouland.

Assessment Metrics For A Prototype Of Simulation System For Cataract Surgery Training, in: Annual Meeting of the Association for Research in Vision and Opthalmology, May 2011.
24A. Yureidini, J. Dequidt, E. Kerrien, C. Duriez, S. Cotin.

Computer-based simulation for the endovascular treatment of intracranial aneurysms, in: Living Imaging International Symposium, December 2011.

References in notes

25J. Allard, M. Marchal, S. Cotin.

Fiber-Based Fracture Model for Simulating Soft Tissue Tearing, in: Medicine Meets Virtual Reality (MMVR), 2009, p. 13-18.
26R. Anxionnat, J. Dequidt, E. Kerrien, C. Duriez, M. Berger, S. Cotin.

Evaluation of a High-Fidelity Simulation for the Endovascular Treatment of Intracranial Aneurysms, in: Congress of the World Federation of Interventional Neuroradiology (WFITN), 2009.
27J. Bacon, N. Tardella, J. Pratt, J. Hu, J. English.

The Surgical Simulation and Training Markup Language (SSTML): An XML-Based Language for Medical Simulation, in: Medicine Meets Virtual Reality (MMVR), 2005, p. 37-42.
28S. Balocco, S. Camara, A. Frangi.

Towards Regional Elastogrpahy of Intracranial Aneurysms, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), 2008.
29M. Bro-Nielsen, S. Cotin.

Real-time deformable models for surgery simulation using finite elements and condensation, in: Computer Graphics Forum, 1996, vol. 3(15), p. 57-66.
30M. Cavusoglu, T. Goktekin, F. Tendick, S. Sastry.

GiPSi: An Open Source/Open Architecture Software Development Framework for Surgical Simulation, in: Medicine Meets Virtual Reality (MMVR), 2004, p. 46-48.
31O. Comas, C. Duriez, S. Cotin.

Shell Model for Reconstruction and Real-Time Simulation of Thin Anatomical Structures, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), Lecture Notes in Computer Science, 2010, vol. 6362, p. 371-379.
32S. Cotin, H. Delingette, N. Ayache.

Real-time elastic deformations of soft tissues for surgery simulation, INRIA, 1998.
33J. Dequidt, C. Duriez, S. Cotin, E. Kerrien.

Towards Interactive Planning of Coil Embolization in Brain Aneurysms, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), 2009.
34C. Duriez, C. Guebert, M. Marchal, S. Cotin, L. Grisoni.

Interactive Simulation of Flexible Needle Insertions Based on Constraint Models, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), 2009, p. 291-299.
35M. Ferrant, S. Warfield, A. Nabavi, F. Jolesz, R. Kikinis.

Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Mode, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), 2000.
36C. Groden, J. Laudan, S. Gatchell, H. Zeumer.

Three-Dimensional Pulsatile Flow Simulation Before and After Endovascular Coil Embolization of a Terminal Cerebral Aneurysm, in: Journal of Cerebral Blood Flow and Metabolism, 2001, vol. 21, p. 1464-1471.
37C. Guebert, C. Duriez, L. Grisoni.

Unified Processing of Constraints for Interactive Simulation, in: Workshop on Virtual Reality Interaction and Physical Simulation (VRIPHYS), 2008.
38N. Kakalis, A. Mitsos, J. Byrne, Y. Ventikos.

The haemodynamics of endovascular aneurysm treatment: a computational modelling approach for estimating the influence of multiple coil deployment, in: IEEE Transactions on Medical Imaging, 2008, vol. 27(6), p. 814-824.
39E. Kerrien, J. Dequidt, M. Berger.

Refining the 3D surface of blood vessels from a reduced set of 2D DSA images, in: Workshop on Augmented environments for Medical Imaging and Computer-aided Surgery, 2008, p. 61-69.
40P. Meseure, J. Davanne, J. Lenoir, L. France, F. Triquet, C. Chaillou.

A Physically-Based Virtual Environment dedicated to Surgical Simulation, in: Surgery Simulation and Soft Tissue Modeling, 2003, p. 1002-1010.
41K. Montgomery, C. Bruyns, J. Brown, G. Thonier, A. Tellier, J. Latombe.

Spring: A General Framework for Collaborative, Real-Time Surgical Simulation, in: Medicine Meets Virtual Reality (MMVR), 2002.
42A. Wittek, R. Kikinis, S. Warfield, K. Miller.

Brain Shift Computation Using a Fully Nonlinear Biomechanical Model, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), 2005, p. 583-590.
43X. Wu, J. Allard, S. Cotin.

Real-time Modeling of Vascular Flow for Angiography Simulation, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), 2007, p. 850-857.

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