Bibliography

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  Shelling the Voronoi interface of protein-protein complexes reveals patterns of residue conservation, dynamics and composition, in: Proteins: structure, function, and bioinformatics, 2009, vol. 76, n^o 3, p. 677–692.
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  Effective nearest neighbors searching on the hyper-cube, with applications to molecular clustering, in: Proc. 14th Annu. ACM Sympos. Comput. Geom., 1998, p. 222–230.
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  Molecular shape analysis based upon the Morse-Smale complex and the Connolly function, in: ACM SoCG, San Diego, USA, 2003.
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  Multi-scale Geometric Modeling of Ambiguous Shapes with Toleranced Balls and Compoundly Weighted $\alpha$-shapes, in: Symposium on Geometry Processing, Lyon, B. Levy, O. Sorkine (editors), 2010, Also as Inria Tech report 7306.
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  Computing the exact arrangement of circles on a sphere, with applications in structural biology, in: Computational Geometry: Theory and Applications, 2009, vol. 42, n^o 6-7, p. 551–565, Preliminary version as Inria Tech report 6049.
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  Estimating Differential Quantities using Polynomial fitting of Osculating Jets, in: Computer Aided Geometric Design, 2005, vol. 22, n^o 2, p. 121–146, Conf. version: Symp. on Geometry Processing 2003.
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  Revisiting the Voronoi description of Protein-Protein interfaces, in: Protein Science, 2006, vol. 15, n^o 9, p. 2082–2092.
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  On the Characterization and Selection of Diverse Conformational Ensembles, in: IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011, vol. 8, n^o 2, p. 487–498.

Articles in International Peer-Reviewed Journals

• 12R. Castro, L. Journeau, H. Pham, O. Bouchez, V. Giudicelli, M.-P. Lefranc, E. Quillet, A. Benmansour, F. Cazals, A. Six, S. Fillatreau, O. Sunyer, P. Boudinot.
  
  Teleost fish mount complex clonal IgM and IgT responses in spleen upon systemic viral infection, in: PLOS Pathogens, 2012, In press.
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  Assessing the Reconstruction of Macro-molecular Assemblies with Toleranced Models, in: Proteins: structure, function, and bioinformatics, 2012, vol. 80, n^o 9, p. 2125–2136.
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  Characterizing the Morphology of Protein Binding Patches, in: Proteins: structure, function, and bioinformatics, 2012, vol. 80, n^o 12, p. 2652–2665.
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  CSA: Comprehensive comparison of pairwise protein structure alignments, in: Nucleic Acids Research, 2012, vol. 40, n^o W1, p. W303–W309.

Scientific Books (or Scientific Book chapters)

• 16F. Cazals, T. Dreyfus, C. Robert.
  
  Modeling Macro-molecular Complexes : a Journey Across Scales, in: Modeling in Computational Biology and Medicine: A Multidisciplinary Endeavor, F. Cazals, P. Kornprobst (editors), Springer, 2013.

Books or Proceedings Editing

• 17F. Cazals, P. Kornprobst (editors)
  
  Modeling in Computational Biology and Medicine: A Multidisciplinary Endeavor, Springer, 2013, 315 p.

Internal Reports

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  Stoichiometry Determination for Mass-spectrometry Data: the Interval Case, Inria, October 2012, n^o RR-8101, 31 p.
  
  http://hal.inria.fr/hal-00741491
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  Probing a Continuum of Macro-molecular Assembly Models with Graph Templates of Complexes, Inria, October 2012, n^o RR-8118, 20 p.
  
  http://hal.inria.fr/hal-00745558

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  The molecular architecture of the nuclear pore complex, in: Nature, 2007, vol. 450, n^o 7170, p. 695–701.
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