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Bibliography

Major publications by the team in recent years Publications of the year

Doctoral Dissertations and Habilitation Theses

  • 10E. Caruyer.

    Q-Space diffusion MRI: Acquisition and signal processing, University of Nice Sophia Antipolis, July 2012.

    http://hal.inria.fr/tel-00750144
  • 11J. Cheng.

    Estimation and Processing of Ensemble Average Propagator and Its Features in Diffusion MRI, University of Nice Sophia Antipolis, May 2012.

    http://hal.inria.fr/tel-00759048
  • 12J. Fruitet.

    Interfaces Cerveau-Machines basées sur l'imagination de mouvements brefs : vers des boutons contrôlés par la pensée, University of Nice Sophia Antipolis, 2012.

Articles in International Peer-Reviewed Journals

  • 13E. Caruyer, R. Deriche.

    Diffusion MRI Signal Reconstruction with Continuity Constraint and Optimal Regularization, in: Medical Image Analysis, August 2012, vol. 16, no 6, p. 1113-1120.

    http://dx.doi.org/10.1016/j.media.2012.06.011
  • 14M. Clerc, J. Leblond, J.-P. Marmorat, T. Papadopoulo.

    Source localization using rational approximation on plane sections, in: Inverse Problems, 2012, vol. 28, no 5, 055018 p. [ DOI : 10.1088/0266-5611/28/5/055018 ]

    http://hal.inria.fr/hal-00699541
  • 15P. Katsaloulis, A. Ghosh, A.-C. Philippe, A. Provata, R. Deriche.

    Fractality in the neuron axonal topography of the human brain based on 3-D diffusion MRI, in: The European Physical Journal B - Condensed Matter and Complex Systems, 2012, vol. 85, no 5, p. 150-157.

    http://www.springerlink.com/content/dx2777t657841627/?MUD

International Conferences with Proceedings

  • 16E. Caruyer, R. Deriche.

    A Computational Framework for Experimental Design in Diffusion MRI, in: CDMRI - MICCAI Workshop on Computational Diffusion MRI, Nice, France, October 2012.

    http://hal.inria.fr/hal-00747700
  • 17E. Caruyer, R. Deriche.

    Optimal Regularization for MR Diffusion Signal Reconstruction, in: ISBI - 9th IEEE International Symposium on Biomedical Imaging, Barcelona, Spain, May 2012.

    http://hal.inria.fr/hal-00660635/en
  • 18J. Cheng, T. Jiang, R. Deriche.

    Nonnegative Definite EAP and ODF Estimation via a Unified Multi-shell HARDI Reconstruction, in: Medical Image Computing and Computer-Assisted Intervention – MICCAI, Lecture Notes in Computer Science, Springer, October 2012, vol. 7511, p. 313-321.
  • 19M. Clerc, C. Wolters, J. Vorwerk, M. Burger.

    Comparison of Boundary Element and Finite Element Approaches to the EEG Forward Problem, in: BMT, Jena, Germany, Walter De Gruyter, 2012, vol. 57. [ DOI : 10.1515/bmt-2012-4152 ]

    http://hal.inria.fr/hal-00736523
  • 20R. Deriche, J. Treilhard.

    Using Radial NMR Profiles to Characterize Pore Size Distributions, in: Proceedings SPIE Medical Imaging - Conference 8314 : Image Processing, San Diego, California, US., February 2012.
  • 21J. Fruitet, A. Carpentier, R. Munos, M. Clerc.

    Bandit Algorithms boost Brain Computer Interfaces for motor-task selection of a brain-controlled button, in: proceedings of NIPS, December 2012.
  • 22A. Ghosh, T. Papadopoulo, R. Deriche.

    Biomarkers for HARDI : 2nd and 4th Order Tensor Invariants, in: IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, May 2012.
  • 23A. Ghosh, T. Papadopoulo, R. Deriche.

    Generalized Invariants of a 4th order tensor: Building blocks for new biomarkers in dMRI, in: Computational Diffusion MRI Workshop (CDMRI), MICCAI, 2012, p. 165–173.

    http://cmic.cs.ucl.ac.uk/cdmri12/pdfs/p6.pdf
  • 24M. Liu, B. C. Vemuri, R. Deriche.

    Unsupervised Automatic White Matter Fiber Clustering Using a Gaussian Mixture Model, in: IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, May 2012.
  • 25S. Merlet, E. Caruyer, R. Deriche.

    Parametric dictionary learning for modeling EAP and ODF in diffusion MRI, in: MICCAI 2012, Nice, France, October 2012, vol. 7512, 7512 p, Lecture Notes in Computer Science series.

    http://hal.archives-ouvertes.fr/hal-00728067
  • 26S. Merlet, E. Caruyer, A. Ghosh, R. Deriche.

    Parametric Dictionary Learning in Diffusion MRI, in: HARDI reconstruction workshop - ISBI - International Symposium on Biomedical Imaging, Barcelona, Spain, Alessandro Daducci and Jean-Philippe Thiran and Yves Wiaux, May 2012.

    http://hal.inria.fr/hal-00697102
  • 27S. Merlet, R. Deriche, K. Whittingstall, M. Descoteaux.

    Diffusion and multiple orientations from 1.5 MR systems with limited gradient tables, in: ISMRM 20th Annual Meeting, Melbourne, Australie, May 2012, 1922 p.

    http://hal.archives-ouvertes.fr/hal-00712686
  • 28S. Merlet, M. Paquette, R. Deriche, M. Descoteaux.

    Ensemble Average Propagator Reconstruction via Compressed Sensing: Discrete or Continuous Bases ?, in: ISMRM 20th Annual Meeting, Australie, May 2012, 2277 p.

    http://hal.archives-ouvertes.fr/hal-00712687
  • 29S. Merlet, A.-C. Philippe, R. Deriche, M. Descoteaux.

    Tractography via the Ensemble Average Propagator in diffusion MRI, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), Nice, France, October 2012, vol. 7511, 7511 p, Lecture Notes in Computer Science series.

    http://hal.archives-ouvertes.fr/hal-00727797
  • 30T. Milne, A. Ghosh, R. Deriche.

    Constrained Diffusion Kurtosis Imaging Using Ternary Quartics and MLE, in: Computational Diffusion MRI Workshop (CDMRI), 2012, MICCAI, 2012, p. 153–164.

    http://cmic.cs.ucl.ac.uk/cdmri12/pdfs/p5.pdf
  • 31A.-C. Philippe, M. Clerc, T. Papadopoulo, R. Deriche.

    A nested cortex parcellation combining analysis of MEG forward problem and diffusion MRI tractography, in: IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, May 2012.
  • 32A.-C. Philippe, M. Clerc, T. Papadopoulo, R. Deriche.

    Whole cortex parcellation combining analysis of MEG forward problem, structural connectivity and Brodmann's atlas, in: BIOMAG, Paris, France, September 2012.

    http://hal.inria.fr/hal-00760042
  • 33E. M. Thomas, J. Fruitet, M. Clerc.

    Investigating brief motor imagery for an ERD/ERS based BCI, in: 34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'12), 2012, p. 2929-2932.

    http://dx.doi.org/10.1109/EMBC.2012.6346577
  • 34G. Vegas-Sánchez-Ferrero, A. Tristán-Vega, S. Aja-Fernández, M. Martín-Fernández, C. Palencia, R. Deriche.

    Anisotropic LMMSE denoising of MRI based on statistitcal tissue models, in: IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, May 2012.

National Conferences with Proceeding

  • 35A.-C. Philippe, M. Clerc, R. Deriche.

    dMRI tractography of WM fibers to recover the anatomical connectivity supporting a MEG epileptic network, in: SFRMBM, Marseille, France, March 2012.

    http://hal.inria.fr/hal-00760041
  • 36A.-C. Philippe, J.-C. Lombardo.

    Study of the brain connectivity in an Immersive Space, in: AFRV, Strasbourg, France, September 2012.

    http://hal.inria.fr/hal-00760084

Conferences without Proceedings

  • 37E. Olivi, M. Clerc, T. Papadopoulo.

    Domain Decomposition to handle versatile conductivity models, in: Proceedings of Biomag, 2012.
  • 38E. Olivi, A. Gramfort, T. Papadopoulo, M. Clerc.

    The adjoint method of OpenMEEG for EEG and MEG with large source space, in: Proceedings of Biomag, 2012.

    ftp://ftp-sop.inria.fr/athena/Publications/2012/olivi-gramfort-etal:12.pdf
  • 39A.-C. Philippe, M. Clerc, T. Papadopoulo, R. Deriche.

    Whole cortex parcellation combining analysis of MEG forward problem, structural connectivity and Brodmann atlas, in: Proceedings of Biomag, 2012.

Scientific Books (or Scientific Book chapters)

  • 40J. De Munck, C. Wolters, M. Clerc.

    EEG and MEG: forward modeling, in: Handbook of Neural Activity Measurement, R. Brette, A. Destexhe (editors), Cambridge University Press, 2012, p. 192-256.

    http://hal.inria.fr/hal-00736444

Scientific Popularization

  • 41A. Demir, M. Ünel, R. Deriche, G. Ünal.

    Elliptic fourier features of brain white matter pathways, in: 20th Signal Processing and Communications Applications Conference (SIU), Fethiye, Türkiye, 2012.

Other Publications

References in notes
  • 43A. Barmpoutis, M. S. Hwang, D. Howland, J. R. Forder, B. C. Vemuri.

    Regularized Positive-Definite Fourth-Order Tensor Field Estimation from DW-MRI, in: NeuroImage, March 2009, vol. 45, no 1, p. S153-162.. [ DOI : 10.1016/j.neuroimage.2008.10.056 ]

    http://www.sciencedirect.com/science/journal/10538119
  • 44P. J. Basser, J. Mattiello, D. Le Bihan.

    Estimation of the effective self-diffusion tensor from the NMR spin echo, in: Journal of Magnetic Resonance, 1994, vol. B, no 103, p. 247–254.
  • 45P. J. Basser, J. Mattiello, D. Le Bihan.

    MR Diffusion Tensor Spectroscopy and imaging, in: Biophysical Journal, 1994, vol. 66, no 1, p. 259–267.
  • 46C. Beaulieu.

    The basis of anisotropic water diffusion in the nervous system - a technical review, in: NMR in Biomedicine, 2002, vol. 15, p. 435-455.
  • 47T. E. J. Behrens, H. Johansen-Berg, S. Jbabdi, M. Rushworth, M. Woolrich.

    Probabilistic diffusion tractography with multiple fibre orientations. What can we gain?, in: NeuroImage, January 2007, vol. 34, no 1, p. 144-155.

    http://www.ncbi.nlm.nih.gov/pubmed/17070705
  • 48M. Descoteaux, E. Angelino, S. Fitzgibbons, R. Deriche.

    Apparent Diffusion Coefficients from High Angular Resolution Diffusion Imaging: Estimation and Applications, in: Magnetic Resonance in Medicine, 2006, vol. 56, p. 395–410.

    ftp://ftp-sop.inria.fr/odyssee/Publications/2006/descoteaux-angelino-etal:06c.pdf
  • 49M. Descoteaux, R. Deriche.

    High Angular Resolution Diffusion MRI Segmentation Using Region-Based Statistical Surface Evolution, in: Journal of Mathematical Imaging and Vision, February 2009, vol. 33, no 2, p. 239-252.

    ftp://ftp-sop.inria.fr/odyssee/Publications/2009/descoteaux-deriche:09.pdf
  • 50M. Descoteaux.

    High Angular Resolution Diffusion MRI: From Local Estimation to Segmentation and Tractography, University of Nice Sophia Antipolis, February 2008.

    ftp://ftp-sop.inria.fr/odyssee/Publications/PhDs/descoteaux_thesis.pdf
  • 51Q. Dong, R. Welsh, T. Chenevert, R. Carlos, P. Maly-Sundgren, D. Gomez-Hassan, S. Mukherji.

    Clinical Applications of Diffusion Tensor Imaging, in: Journal of Magnetic Resonance Imaging, 2004, vol. 19, p. 6–18.
  • 52J. Fruitet, A. Carpentier, R. Munos, M. Clerc.

    Automatic motor task selection via a bandit algorithm for a brain-controlled button, in: Journal of Neural Engineering, January 2013.
  • 53A. Ghosh, R. Deriche.

    From Second to Higher Order Tensors in Diffusion-MRI, in: Tensors in Image Processing and Computer Vision, S. Aja-Fernández, R. de Luis García, D. Tao, X. Li (editors), Advances in Pattern Recognition, Springer London, May 2009, chap. 9. [ DOI : 10.1007/978-1-84882-299-3 ]

    http://www.springer.com/computer/computer+imaging/book/978-1-84882-298-6
  • 54A. Ghosh, R. Deriche.

    Fast and Analytical EAP Approximation from a 4th Order Tensor, in: International Journal of Biomedical Imaging, Special Issue: Advanced Signal Processing Methods for Biomedical Imaging, 2013.
  • 55A. Ghosh, R. Deriche.

    From Diffusion MRI to Brain Connectomics, in: Modeling in Computational Biology and Medicine: A Multidisciplinary Endeavor, F. Cazals, P. Kornprobst (editors), Springer, 2013, chap. 6, p. 137–166.
  • 56A. Ghosh.

    High Order Models in Diffusion MRI and Applications, University of Nice Sophia Antipolis, April 2011.

    ftp://ftp-sop.inria.fr/athena/Publications/PhDs/ghosh:11.pdf
  • 57A. Ghosh, E. Tsigaridas, B. Mourrain, R. Deriche.

    A polynomial approach for extracting the extrema of a spherical function and its application in diffusion MRI, in: Medical Image Analysis, 2013.
  • 58K. M. Jansons, D. C. Alexander.

    Persistent angular structure: new insights fom diffusion magnetic resonance imaging data, in: Inverse Problems, 2003, vol. 19, p. 1031-1046.
  • 59D. Le Bihan, E. Breton.

    Imagerie de Diffusion it in vivo par Résonnance Magnétique Nucléaire, in: CR Académie des Sciences, 1985, no 301, p. 1109-1112.
  • 60D. Le Bihan, J.-F. Mangin, C. Poupon, C. Clark, S. Pappata, N. Molko, H. Chabriat.

    Diffusion tensor imaging: concepts and applications., in: J Magn Reson Imaging., 2001, vol. 13, no 4, p. 534-46.

    http://www.ncbi.nlm.nih.gov/pubmed/11276097
  • 61C. Lenglet, J. S. W. Campbell, M. Descoteaux, G. Haro, P. Savadjiev, D. Wassermann, A. Anwander, R. Deriche, G. B. Pike, G. Sapiro, K. Siddiqi, P. Thompson.

    Mathematical Methods for Diffusion MRI Processing, in: NeuroImage, March 2009, vol. 45, no 1, p. S111-S122..

    ftp://ftp-sop.inria.fr/odyssee/Publications/2009/lenglet-campbell-etal:09.pdf
  • 62C. Lenglet, M. Rousson, R. Deriche.

    DTI Segmentation by Statistical Surface Evolution, in: IEEE Transactions on Medical Imaging,, June 2006, vol. 25, no 06, p. 685–700.

    ftp://ftp-sop.inria.fr/odyssee/Publications/2006/lenglet-rousson-etal:06c.pdf
  • 63M. Liu, B. C. Vemuri, R. Deriche.

    A robust variational approach for simultaneous smoothing and estimation of DTI, in: NeuroImage, February 2013, vol. 67, p. 33–41.
  • 64K. Merboldt, W. Hanicke, J. Frahm.

    Self-diffusion NMR Imaging Using Stimulated Echoes, in: J. Magn. Reson., 1985, vol. 64, p. 479–486.
  • 65M. Moseley, Y. Cohen, J. Mintorovitch, J. Kucharczyk, J. Tsuruda, P. Weinstein, D. Norman.

    Evidence of Anisotropic Self-Diffusion, in: Radiology, 1990, vol. 176, p. 439–445.
  • 66P. Osment, K. Packer, M. Taylor, J. J. Attard, T. A. Carpenter, L. D. Hall, S. J. Doran, N. J. Herrod.

    NMR Imaging of Fluids in Porous Solids, in: Phil. Trans. Roy. Soc., 1990, vol. 333, p. 441–452.
  • 67C. Pierpaoli, P. Jezzard, P. J. Basser, A. Barnett, G. D. Chiro.

    Diffusion Tensor MR Imaging of Human Brain, in: Radiology, 1996, vol. 201, p. 637–648.
  • 68C. Poupon.

    Détection des faisceaux de fibres de la substance blanche pour l'étude de la connectivité anatomique cérébrale., Ecole Nationale Supérieure des Télécommunications, December 1999.
  • 69S. Rossignol, M. Schwab, M. Schwartz, M. Fehlings.

    Spinal cord injury: time to move ?, in: The Journal of Neuroscience,, October 2007, vol. 27, p. 11782-11792. [ DOI : 10.1523/JNEUROSCI.3444-07.2007 ]

    http://www.jneurosci.org/cgi/content/full/27/44/11782
  • 70D. Taylor, M. Bushell.

    The spatial mapping of translational diffusion coefficients by the NMR imaging technique, in: Phys. Med. Biol., 1985, vol. 30, p. 345-349. [ DOI : 10.1088/0031-9155/30/4/009 ]

    http://www.iop.org/EJ/abstract/0031-9155/30/4/009
  • 71S. Thuret, L. Moon, F. Gage.

    Therapeutic interventions after spinal cord injury., in: Nature Reviews Neuroscience, August 2006, vol. 7, p. 628-643. [ DOI : 10.1038/nrn1955 ]

    http://www.nature.com/nrn/journal/v7/n8/full/nrn1955.html
  • 72D. S. Tuch, J. W. Belliveau, R. M. Weisskoff, V. J. Wedeen.

    High Angular Resolution Imaging of the Human Brain, in: Proceedings of the International Society for the Magnetic Resonance in Medecine, April 1999.

    http://cds.ismrm.org/ismrm-1999/PDF2/321.pdf
  • 73D. S. Tuch, T. G. Reese, M. R. Wiegell, N. G. Makris, J. W. Belliveau, V. J. Wedeen.

    High Angular Resolution Diffusion Imaging Reveals Intravoxel White Matter Fiber Heterogeneity, in: Magn. Res. Med., 2002, vol. 48, no 4, p. 577–582.
  • 74D. S. Tuch.

    Diffusion MRI of Complex Tissue Structure, Harvard University and Massachusetts Institute of Technology, 2002.
  • 75S. Vallaghé, M. Clerc, J.-M. Badier.

    In vivo conductivity estimation using somatosensory evoked potentials and cortical constraint on the source, in: Proceedings of ISBI, April 2007, p. 1036–1039.

    http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4193466
  • 76V. J. Wedeen, T. G. Reese, D. S. Tuch, M. R. Weigell, J.-G. Dou, R. M. Weisskoff, D. Chessler.

    Mapping Fiber Orientation Spectra in Cerebral White Matter with Fourier-Transform Diffusion MRI, in: Proceedings of the International Society for the Magnetic Resonance in Medecine: 8th Scientific Meeting and Exhibition, 2000, vol. 8.
  • 77E. Özarslan, T. H. Mareci.

    Generalized Diffusion Tensor Imaging and Analytical Relationships Between Diffusion Tensor Imaging and High Angular Resolution Imaging, in: Magnetic Resonance in Medicine, 2003, vol. 50, p. 955–965.
  • 78E. Özarslan, N. Shemesh, C. G. Koay, Y. Cohen, P. J. Basser.

    NMR characterization of general compartment size distributions, in: New Journal of Physics, 2011, vol. 13.
  • 79E. Özarslan, T. Shepherd, B. C. Vemuri, S. Blackband, T. H. Mareci.

    Resolution of Complex Tissue Microarchitecture Using the Diffusion Orientation Transform (DOT), in: NeuroImage, 2006, vol. 31, no 3, p. 1086–1103.
  • 80E. Özarslan, B. C. Vemuri, T. H. Mareci.

    Generalized Scalar Measures for Diffusion MRI Using Trace, Variance and Entropy, in: Magnetic Resonance in Medicine, 2005, vol. 53, no 4, p. 866-876.


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