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Bibliography

Major publications by the team in recent years Publications of the year

Doctoral Dissertations and Habilitation Theses

Articles in International Peer-Reviewed Journals

  • 13E. Caruyer, I. Aganj, C. Lenglet, G. Sapiro, R. Deriche.

    Motion Detection in Diffusion MRI via Online ODF Estimation, in: International Journal of Biomedical Imaging, January 2013, vol. 2013, no Article ID 84936, pp. 1-8. [ DOI : 10.1155/2013/849363 ]

    http://hal.inria.fr/hal-00798582
  • 14E. Caruyer, C. Lenglet, G. Sapiro, R. Deriche.

    Design of multishell sampling schemes with uniform coverage in diffusion MRI, in: Magnetic Resonance in Medicine, April 2013, vol. 69, no 6, pp. 1534-1540. [ DOI : 10.1002/mrm.24736 ]

    http://hal.inria.fr/hal-00821688
  • 15M. Clerc.

    Review of "Brain-Computer Interfaces, principles and practise", edited by Jonathan R. Wolpaw and Elizabeth Winter Wolpaw, in: BioMedical Engineering OnLine, March 2013, vol. 12, no 22. [ DOI : 10.1186/1475-925X-12-22 ]

    http://hal.inria.fr/hal-00804545
  • 16A. Daducci, E. Canales Rodgriguez, M. Descoteaux, E. Garyfallidis, Y. Gur, Y. C. Lin, M. Mani, S. Merlet, M. Paquette, A. Ramirez-Manzanares, M. Reisert, P. R. Rodrigues, F. Sepehrband, E. Caruyer, J. Choupan, R. Deriche, M. Jacob, G. Menegaz, V. Prckovska, M. Rivera, Y. Wiaux, J.-P. Thiran.

    Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI, in: IEEE Transactions on Medical Imaging, October 2013, no 99. [ DOI : 10.1109/TMI.2013.2285500 ]

    http://hal.inria.fr/hal-00908289
  • 17J. Fruitet, A. Carpentier, R. Munos, M. Clerc.

    Automatic motor task selection via a bandit algorithm for a brain-controlled button, in: Journal of Neural Engineering, January 2013, vol. 10, no 1. [ DOI : 10.1088/1741-2560/10/1/016012 ]

    http://hal.inria.fr/hal-00798561
  • 18A. Ghosh, T. Milne, R. Deriche.

    Constrained diffusion kurtosis imaging using ternary quartics & MLE, in: Magnetic Resonance in Medicine, July 2013. [ DOI : 10.1002/mrm.24781 ]

    http://hal.inria.fr/hal-00842786
  • 19A. Ghosh, E. Tsigaridas, B. Mourrain, R. Deriche.

    A polynomial approach for extracting the extrema of a spherical function and its application in diffusion MRI, in: Medical Image Analysis, July 2013, vol. 17, no 5, pp. 503-514. [ DOI : 10.1016/j.media.2013.03.004 ]

    http://hal.inria.fr/hal-00815120
  • 20M. Liu, B. C. Vemuri, R. Deriche.

    A Robust Variational Approach for Simultaneous Smoothing and Estimation of DTI, in: NeuroImage, February 2013, vol. 67, pp. 33-41. [ DOI : 10.1016/j.neuroimage.2012.11.012 ]

    http://hal.inria.fr/hal-00808015
  • 21S. Merlet, E. Caruyer, A. Ghosh, R. Deriche.

    A computational diffusion MRI and parametric dictionary learning framework for modeling the diffusion signal and its features, in: Medical Image Analysis, May 2013, MEDIMA779 p. [ DOI : 10.1016/j.media.2013.04.011 ]

    http://hal.inria.fr/hal-00820817
  • 22S. Merlet, R. Deriche.

    Continuous diffusion signal, EAP and ODF estimation via Compressive Sensing in diffusion MRI, in: Medical Image Analysis, July 2013, vol. 17, no 5, pp. 556-572. [ DOI : 10.1016/j.media.2013.02.010 ]

    http://hal.inria.fr/hal-00815108
  • 23E. Thomas, M. Dyson, M. Clerc.

    An analysis of performance evaluation for motor-imagery based BCI, in: Journal of Neural Engineering, 2013. [ DOI : 10.1088/1741-2560/10/3/031001 ]

    http://hal.inria.fr/hal-00821971
  • 24E. Thomas, J. Fruitet, M. Clerc.

    Combining ERD and ERS features to create a system-paced BCI, in: Journal of Neuroscience Methods, 2013. [ DOI : 10.1016/j.jneumeth.2013.03.026 ]

    http://hal.inria.fr/hal-00821973
  • 25M. Zaepffel, R. Trachel, B. E. Kilavik, T. Brochier.

    Modulations of EEG Beta Power during Planning and Execution of Grasping Movements, in: PLoS ONE, 2013, vol. 8, no 3. [ DOI : 10.1371/journal.pone.0060060 ]

    http://hal.inria.fr/hal-00816340

Invited Conferences

  • 26M. Clerc, J. Mattout, E. Maby, D. Devlaminck, T. Papadopoulo, V. Guy, C. Desnuelle.

    Verbal Communication through Brain Computer Interfaces, in: Interspeech - 14th Annual Conference of the International Speech Communication Association - 2013, Lyon, France, Frédéric Bimbot, 2013.

    http://hal.inria.fr/hal-00842851

International Conferences with Proceedings

  • 27J. Cheng, T. Jiang, R. Deriche, S. Dinggang, Y. Pew-Thian.

    Regularized Spherical Polar Fourier Diffusion MRI with Optimal Dictionary Learning, in: The 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Nagoya, Japan, September 2013.

    http://hal.inria.fr/hal-00824507
  • 28D. Cherifi, A. Chellouche, A. Ait Ouakli, Y. Benamara, R. Deriche.

    Tensor Estimation and Visualization using dMRI, in: 8th International Workshop on Systems, Signal Processing and their Applications (WoSSPA), 2013, Zeralda, Algeria, CDTA, May 2013.

    http://hal.inria.fr/hal-00917618
  • 29A. Ghosh, T. Megherbi, F. Oulebsir Boumghar, R. Deriche.

    Fiber Orientation Distribution from Non-Negative Sparse Recovery, in: International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, CA, United States, April 2013.

    http://hal.inria.fr/hal-00808065
  • 30S. Hitziger, M. Clerc, A. Gramfort, S. Saillet, C. Bénar, T. Papadopoulo.

    Jitter-Adaptive Dictionary Learning - Application to Multi-Trial Neuroelectric Signals, in: ICLR - 1st International Conference on Learning Representations - 2013, Scottsdale, AZ, United States, Yoshua Bengio, Yann Lecun, January 2013, submission for ICLR 2013.

    http://hal.inria.fr/hal-00837987
  • 31S. Merlet, M. Paquette, R. Deriche, M. Descoteaux.

    Compressive Sensing DSI, in: International Symposium on BIOMEDICAL IMAGING: From Nano to Macro - ISBI HARDI Reconstruction Challenge, San Francisco, United States, April 2013.

    http://hal.inria.fr/hal-00908209
  • 32A.-C. Philippe, M. Clerc, T. Papadopoulo, R. Deriche.

    Cortex parcellation via diffusion data as prior knowledge for the MEG inverse problem, in: Biomedical Imaging (ISBI), 2013 IEEE 10th International Symposium on, San Francisco, United States, 2013, pp. 994-997. [ DOI : 10.1109/ISBI.2013.6556644 ]

    http://hal.inria.fr/hal-00858019
  • 33E. M. Thomas, M. Clerc, A. Carpentier, E. Daucé, D. Devlaminck, R. Munos.

    Optimizing P300-speller sequences by RIP-ping groups apart, in: IEEE/EMBS 6th international conference on neural engineering (2013), San Diego, United States, IEEE/EMBS, November 2013.

    http://hal.inria.fr/hal-00907781
  • 34R. Trachel, T. Brochier, M. Clerc.

    Adaptive and Warning Displays with Brain-Computer Interfaces : Enhanced Visuospatial Attention Performance, in: IEEE/EMBS 6th international conference on neural engineering, San diego, United States, November 2013, Some parts of this work have been covered by a patent, application (n° 13 60563) at Institut National de la Propriété Intellectuelle (INPI).

    http://hal.inria.fr/hal-00903288
  • 35R. Trachel, T. Brochier, M. Clerc.

    Enhancing Visuospatial Attention Performance with Brain-Computer Interfaces, in: ACM SIGCHI Conference on Human Factors in Computing Systems, Paris, France, May 2013, pp. ACM 978-1-4503-1952-2.

    http://hal.inria.fr/hal-00817799

Scientific Books (or Scientific Book chapters)

  • 36M. Clerc, T. Papadopoulo, C. Bénar.

    Single-Trial Analysis of Bioelectromagnetic Signals: The Quest for Hidden Information, in: Modeling in Computational Biology and Biomedicine: A Multidisciplinary Endeavor, F. Cazals, P. Kornprobst (editors), Springer, 2013, pp. 237–259. [ DOI : 10.1007/978-3-642-31208-3 ]

    http://hal.inria.fr/hal-00849690
  • 37A. Ghosh, R. Deriche.

    4th Order Symmetric Tensors and Positive ADC Modelling, in: Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data (Dagstuhl Seminar 11501), A. Vilanova, C.-F. Westin, B. Burgeth (editors), Springer, 2013.

    http://hal.inria.fr/hal-00848513
  • 38A. Ghosh, R. Deriche.

    From Diffusion MRI to Brain Connectomics, in: Modeling in Computational Biology and Biomedicine: A Multidisciplinary Endeavor, F. Cazals, P. Kornprobst (editors), Springer, 2013, pp. 193-234. [ DOI : 10.1007/978-3-642-31208-3 ]

    http://hal.inria.fr/hal-00667912
  • 39T. Schultz, A. Fuster, A. Ghosh, R. Deriche, L. Florack, L. Lek-Heng.

    Higher-Order Tensors in Diffusion Imaging, in: Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data. Dagstuhl Seminar 2011, B. Burgeth, A. Vilanova, C. F. Westin (editors), Springer, 2013.

    http://hal.inria.fr/hal-00848526

Other Publications

  • 40A.-C. Philippe, C. Bénar, J.-M. Badier, T. Papadopoulo, R. Deriche, M. Clerc.

    Propagation of epileptic spikes revealed by diffusion-based constrained MEG source reconstruction, in: Scale-free Dynamics and Networks in Neuroscience, Montreal, Canada, October 2013, Scale-free Dynamics and Networks in Neuroscience.

    http://hal.inria.fr/hal-00908664
References in notes
  • 41A. Barmpoutis, M. S. Hwang, D. Howland, J. R. Forder, B. C. Vemuri.

    Regularized Positive-Definite Fourth-Order Tensor Field Estimation from DW-MRI, in: NeuroImage, March 2009, vol. 45, no 1, pp. S153-162.. [ DOI : 10.1016/j.neuroimage.2008.10.056 ]

    http://www.sciencedirect.com/science/journal/10538119
  • 42P. J. Basser, J. Mattiello, D. Le Bihan.

    Estimation of the effective self-diffusion tensor from the NMR spin echo, in: Journal of Magnetic Resonance, 1994, vol. B, no 103, pp. 247–254.
  • 43P. J. Basser, J. Mattiello, D. Le Bihan.

    MR Diffusion Tensor Spectroscopy and imaging, in: Biophysical Journal, 1994, vol. 66, no 1, pp. 259–267.
  • 44C. Beaulieu.

    The basis of anisotropic water diffusion in the nervous system - a technical review, in: NMR in Biomedicine, 2002, vol. 15, pp. 435-455.
  • 45T. E. J. Behrens, H. Johansen-Berg, S. Jbabdi, M. Rushworth, M. Woolrich.

    Probabilistic diffusion tractography with multiple fibre orientations. What can we gain?, in: NeuroImage, January 2007, vol. 34, no 1, pp. 144-155.

    http://www.ncbi.nlm.nih.gov/pubmed/17070705
  • 46C. Bénar, T. Papadopoulo, B. Torrésani, M. Clerc.

    Consensus Matching Pursuit for Multi-Trial EEG Signals, in: Journal of Neuroscience Methods, 2009, vol. 180, pp. 161–170. [ DOI : DOI: 10.1016/j.jneumeth.2009.03.005 ]

    http://www.sciencedirect.com/science/article/B6T04-4VWHVX5-2/2/e6ebdc581a60cde843503fe30f9940d1
  • 47E. Caruyer.

    Q-Space diffusion MRI: Acquisition and signal processing, University of Nice Sophia Antipolis, July 2012.

    http://hal.inria.fr/tel-00750144
  • 48J. Cheng.

    Estimation and Processing of Ensemble Average Propagator and Its Features in Diffusion MRI, University of Nice Sophia Antipolis, May 2012.

    http://hal.inria.fr/tel-00759048
  • 49M. Clerc, J. Leblond, J.-P. Marmorat, T. Papadopoulo.

    Source localization using rational approximation on plane sections, in: Inverse Problems, 2012, vol. 28, no 5, 055018 p. [ DOI : 10.1088/0266-5611/28/5/055018 ]

    http://hal.inria.fr/hal-00699541
  • 50P. A. Cook, Y. Bai, S. Nedjati-Gilani, K. K. Seunarine, M. G. Hall, G. J. Parker, D. C. Alexander.

    Camino: Open-Source Diffusion-MRI Reconstruction and Processing, in: 14th ISMRM, Seattle, USA, 2006.
  • 51M. Descoteaux, E. Angelino, S. Fitzgibbons, R. Deriche.

    Apparent Diffusion Coefficients from High Angular Resolution Diffusion Imaging: Estimation and Applications, in: Magnetic Resonance in Medicine, 2006, vol. 56, pp. 395–410.

    ftp://ftp-sop.inria.fr/odyssee/Publications/2006/descoteaux-angelino-etal:06c.pdf
  • 52M. Descoteaux, R. Deriche.

    High Angular Resolution Diffusion MRI Segmentation Using Region-Based Statistical Surface Evolution, in: Journal of Mathematical Imaging and Vision, February 2009, vol. 33, no 2, pp. 239-252.

    ftp://ftp-sop.inria.fr/odyssee/Publications/2009/descoteaux-deriche:09.pdf
  • 53M. Descoteaux.

    High Angular Resolution Diffusion MRI: From Local Estimation to Segmentation and Tractography, University of Nice Sophia Antipolis, February 2008.

    ftp://ftp-sop.inria.fr/odyssee/Publications/PhDs/descoteaux_thesis.pdf
  • 54Q. Dong, R. Welsh, T. Chenevert, R. Carlos, P. Maly-Sundgren, D. Gomez-Hassan, S. Mukherji.

    Clinical Applications of Diffusion Tensor Imaging, in: Journal of Magnetic Resonance Imaging, 2004, vol. 19, pp. 6–18.
  • 55A. Ghosh, R. Deriche.

    From Second to Higher Order Tensors in Diffusion-MRI, in: Tensors in Image Processing and Computer Vision, S. Aja-Fernández, R. de Luis García, D. Tao, X. Li (editors), Advances in Pattern Recognition, Springer London, May 2009, chap. 9. [ DOI : 10.1007/978-1-84882-299-3 ]

    http://www.springer.com/computer/computer+imaging/book/978-1-84882-298-6
  • 56A. Ghosh.

    High Order Models in Diffusion MRI and Applications, University of Nice Sophia Antipolis, April 2011.

    ftp://ftp-sop.inria.fr/athena/Publications/PhDs/ghosh:11.pdf
  • 57A. Gramfort, T. Papadopoulo, E. Olivi, M. Clerc.

    OpenMEEG: opensource software for quasistatic bioelectromagnetics, in: BioMedical Engineering OnLine, September 2010, vol. 9, no 45.

    http://hal.inria.fr/inria-00467061
  • 58A. Gramfort, T. Papadopoulo, E. Olivi, M. Clerc.

    Forward Field Computation with OpenMEEG, in: Computational Intelligence and Neuroscience, 2011. [ DOI : 10.1155/2011/923703 ]

    http://www.hindawi.com/journals/cin/2011/923703/
  • 59K. M. Jansons, D. C. Alexander.

    Persistent angular structure: new insights fom diffusion magnetic resonance imaging data, in: Inverse Problems, 2003, vol. 19, pp. 1031-1046.
  • 60D. Le Bihan, E. Breton.

    Imagerie de Diffusion it in vivo par Résonnance Magnétique Nucléaire, in: CR Académie des Sciences, 1985, no 301, pp. 1109-1112.
  • 61D. Le Bihan, J.-F. Mangin, C. Poupon, C. Clark, S. Pappata, N. Molko, H. Chabriat.

    Diffusion tensor imaging: concepts and applications, in: J Magn Reson Imaging., 2001, vol. 13, no 4, pp. 534-46.

    http://www.ncbi.nlm.nih.gov/pubmed/11276097
  • 62C. Lenglet, J. S. W. Campbell, M. Descoteaux, G. Haro, P. Savadjiev, D. Wassermann, A. Anwander, R. Deriche, G. B. Pike, G. Sapiro, K. Siddiqi, P. Thompson.

    Mathematical Methods for Diffusion MRI Processing, in: NeuroImage, March 2009, vol. 45, no 1, pp. S111-S122..

    ftp://ftp-sop.inria.fr/odyssee/Publications/2009/lenglet-campbell-etal:09.pdf
  • 63C. Lenglet, M. Rousson, R. Deriche.

    DTI Segmentation by Statistical Surface Evolution, in: IEEE Transactions on Medical Imaging,, June 2006, vol. 25, no 06, pp. 685–700.

    ftp://ftp-sop.inria.fr/odyssee/Publications/2006/lenglet-rousson-etal:06c.pdf
  • 64K. Merboldt, W. Hanicke, J. Frahm.

    Self-diffusion NMR Imaging Using Stimulated Echoes, in: J. Magn. Reson., 1985, vol. 64, pp. 479–486.
  • 65M. Moseley, Y. Cohen, J. Mintorovitch, J. Kucharczyk, J. Tsuruda, P. Weinstein, D. Norman.

    Evidence of Anisotropic Self-Diffusion, in: Radiology, 1990, vol. 176, pp. 439–445.
  • 66P. Osment, K. Packer, M. Taylor, J. J. Attard, T. A. Carpenter, L. D. Hall, S. J. Doran, N. J. Herrod.

    NMR Imaging of Fluids in Porous Solids, in: Phil. Trans. Roy. Soc., 1990, vol. 333, pp. 441–452.
  • 67C. Pierpaoli, P. Jezzard, P. J. Basser, A. Barnett, G. D. Chiro.

    Diffusion Tensor MR Imaging of Human Brain, in: Radiology, 1996, vol. 201, pp. 637–648.
  • 68C. Poupon.

    Détection des faisceaux de fibres de la substance blanche pour l'étude de la connectivité anatomique cérébrale, Ecole Nationale Supérieure des Télécommunications, December 1999.
  • 69S. Rossignol, M. Schwab, M. Schwartz, M. Fehlings.

    Spinal cord injury: time to move ?, in: The Journal of Neuroscience,, October 2007, vol. 27, pp. 11782-11792. [ DOI : 10.1523/JNEUROSCI.3444-07.2007 ]

    http://www.jneurosci.org/cgi/content/full/27/44/11782
  • 70T. Schultz, A. Fuster, A. Ghosh, R. Deriche, L. Florack, L.-H. Lim.

    Higher-Order Tensors in Diffusion Imaging, in: Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data, C.-F. Westin, B. Burgeth (editors), Springer, 2013, Dagstuhl Reports.

    http://hal.inria.fr/hal-00848526
  • 71D. Taylor, M. Bushell.

    The spatial mapping of translational diffusion coefficients by the NMR imaging technique, in: Phys. Med. Biol., 1985, vol. 30, pp. 345-349. [ DOI : 10.1088/0031-9155/30/4/009 ]

    http://www.iop.org/EJ/abstract/0031-9155/30/4/009
  • 72S. Thuret, L. Moon, F. Gage.

    Therapeutic interventions after spinal cord injury, in: Nature Reviews Neuroscience, August 2006, vol. 7, pp. 628-643. [ DOI : 10.1038/nrn1955 ]

    http://www.nature.com/nrn/journal/v7/n8/full/nrn1955.html
  • 73D. S. Tuch, J. W. Belliveau, R. M. Weisskoff, V. J. Wedeen.

    High Angular Resolution Imaging of the Human Brain, in: Proceedings of the International Society for the Magnetic Resonance in Medecine, April 1999.

    http://cds.ismrm.org/ismrm-1999/PDF2/321.pdf
  • 74D. S. Tuch, T. G. Reese, M. R. Weigel, N. G. Makris, J. W. Belliveau, V. J. Wedeen.

    High Angular Resolution Diffusion Imaging Reveals Intravoxel White Matter Fiber Heterogeneity, in: Magn. Res. Med., 2002, vol. 48, no 4, pp. 577–582.
  • 75D. S. Tuch.

    Diffusion MRI of Complex Tissue Structure, Harvard University and Massachusetts Institute of Technology, 2002.
  • 76S. Vallaghé, M. Clerc, J.-M. Badier.

    In vivo conductivity estimation using somatosensory evoked potentials and cortical constraint on the source, in: Proceedings of ISBI, April 2007, pp. 1036–1039.

    http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4193466
  • 77V. J. Wedeen, T. G. Reese, D. S. Tuch, M. R. Weigel, J.-G. Dou, R. M. Weisskoff, D. Chessler.

    Mapping Fiber Orientation Spectra in Cerebral White Matter with Fourier-Transform Diffusion MRI, in: Proceedings of the International Society for the Magnetic Resonance in Medecine: 8th Scientific Meeting and Exhibition, 2000, vol. 8.
  • 78E. Özarslan, T. H. Mareci.

    Generalized Diffusion Tensor Imaging and Analytical Relationships Between Diffusion Tensor Imaging and High Angular Resolution Imaging, in: Magnetic Resonance in Medicine, 2003, vol. 50, pp. 955–965.
  • 79E. Özarslan, N. Shemesh, C. G. Koay, Y. Cohen, P. J. Basser.

    NMR characterization of general compartment size distributions, in: New Journal of Physics, 2011, vol. 13.
  • 80E. Özarslan, T. Shepherd, B. C. Vemuri, S. Blackband, T. H. Mareci.

    Resolution of Complex Tissue Microarchitecture Using the Diffusion Orientation Transform (DOT), in: NeuroImage, 2006, vol. 31, no 3, pp. 1086–1103.
  • 81E. Özarslan, B. C. Vemuri, T. H. Mareci.

    Generalized Scalar Measures for Diffusion MRI Using Trace, Variance and Entropy, in: Magnetic Resonance in Medicine, 2005, vol. 53, no 4, pp. 866-876.


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