Section: Dissemination

Teaching - Supervision - Juries

Teaching

Note that due to his sabbatical stay in Berkeley, Hédi Soula had no teaching assignment in 2012-2013.

• Licence: Guillaume Beslon, Computer Architecture, 100h, L3, Computer Science Department of INSA-Lyon.

• Licence: Guillaume Beslon, Project Management, 20h, L3 and M1, Computer Science Department of INSA-Lyon.

• Licence: Guillaume Beslon, Backstage management and organization, 20h, L3, Humanities Department of INSA-Lyon.

• Licence: Carole Knibbe (Carole Knibbe has a “délégation Inria” for the 2013-2014 period. The teaching indicated here is for the 2012-2013 period.), Procedural Programming, 133h, L2

• Licence: Christophe Rigotti, Imperative Programming, 39h L1 and 47h L2, Département 1er cycle of INSA-Lyon.

• Licence: Christophe Rigotti, Object-Oriented Programming, 47h, L2, Département 1er cycle of INSA-Lyon.

• Licence: Christophe Rigotti, Computer Simulation, 24h, L2, Département 1er cycle of INSA-Lyon.

• Master: Guillaume Beslon, Bio-inspired computing, 30h, M2, Computer Science Department of INSA-Lyon and Artificial Intelligence master program of Université Lyon 1.

• Master: Guillaume Beslon, Computational Biology, 10h, M2, Bioinformatics and Modeling Department of INSA-Lyon.

• Master: Guillaume Beslon, Digital genetics, 2h, M2, Interface Physics-Biology master program at Ecole Normale Supérieure de Lyon (ENS-Lyon).

• Master: Guillaume Beslon, Introduction to Modeling, 20h, M2, Master of Complex Systems at Ecole Normale Supérieure de Lyon (ENS-Lyon).

• Master: Carole Knibbe, Scientific methodology, 24h, M2, Artificial Intelligence master program of Université Lyon 1.

• Master: Carole Knibbe, Bio-inspired computing, 14h, M2, Artificial Intelligence master program of Université Lyon 1.

• Master: Carole Knibbe, Modeling and simulation in Biology and Medicine, 12h, M2, Complex Systems master program of Ecole Normale Supérieure de Lyon.

• Master: Eric Tannier, Computational Biology, 24h, M2, Ecole Normale Supérieure de Lyon.

• Master: Eric Tannier, Discrete Mathematics, 8h, M1, Bioinformatics and Modeling Department of INSA-Lyon.

• Master: Eric Tannier, Mathématiques et Informatique pour le génome, 26h, M1, Bioinformatics and Modeling Department of INSA-Lyon.

• Master: Eric Tannier, Bioinformatique, 24h, M1, ISBM Monastir, Tunisie.

• Master: Christophe Rigotti, Data Mining, 25h, M1, Bioinformatics and Modeling Department of INSA-Lyon.

Supervision

• PhD: Gaël Kaneko, Analyse et modélisation de la stochasticité de l’expression génique dans des cellules eucaryotes, INSA de Lyon, defended on September 26th, 2013, co-supervised by G. Beslon and O. Gandrillon (CGPhiMC, UMR CNRS 5534, Lyon).

• PhD: Stephan Fischer, Modélisation de l’évolution de la taille des génomes et de leur densité en gènes par mutations locales et grands réarrangements chromosomiques, INSA de Lyon, defended on December 2nd, 2013, co-supervised by C. Knibbe, G. Beslon and S. Bernard (Inria Dracula team and Institut Camille Jordan, UMR CNRS 5208, Lyon).

• PhD in progress: Bérénice Batut, Study of reductive evolution of bacterial genomes using bioinformatic analyses and in silico evolutionary experiments, INSA de Lyon, started in October 2011, co-supervised by C. Knibbe, G. Beslon and G. Marais (LBBE, UMR CNRS 5558, Lyon).

• PhD in progress: Charles Rocabert, Modélisation de l'évolution des microorganismes bactériens par des approches de simulation informatique, INSA de Lyon, started in Novembre 2013, co-supervised by G. Beslon and C. Knibbe.

• PhD in progress: Yoram Vadee Le Brun, Evolution expérimentale in silico de réseaux de régulation génétique, INSA de Lyon, started in September 2013, superviser by G. Beslon.

• PhD in progress: Magali Semeria, Biologie évolutive des systèmes, Université Lyon 1, started in September 2012, co-supervised by E. Tannier and L. Gueguen (LBBE, UMR CNRS 5558)

• PhD in progress: Jules Lallouette, Transport dans les reseaux complexes : le cas des réseaux mixtes neurones-cellules gliales, INSA de Lyon, started in October 2011, supervised by H. Berry.

• PhD in progress: Ilia Prokin, Computational Systems Biology of Signal Transduction in Living Cells: Synaptic Plasticity of Basal Ganglia Neurons, INSA de Lyon, started in October 2013, supervised by H. Berry.

• Master internship: Ewy Yang, Détection phylogénétique de co-évolution de gènes, March-August 2013, supervised by E. Tannier

• Master internship: Charles Rocabert, Evolution de la stochasticité de l’expression génique, from February 2013 to June 2013, supervised by G. Beslon

• Master internship: Sylvain Devaux, Development of a computer game to teach evolution of antibiotic resistance, from October 2013 to February 2014, supervised by G. Beslon

• Master internship: Maxence Dolle, Simulation of biochemical reactions in non-homogeneous media, from May 2013 until Aug 2013, co-supervised by G. Beslon and H. Berry

• Master internship: Osama Khalil, Computational systems biology of signal transduction in living cells, from Feb 2013 until May 2013, supervised by H. Berry

• Master internship: Amanda Lo Van, Modélisation basée sur l'individu de circuits génétiques simples, from Feb 2013 until Jun 2013, supervised by H. Berry

• Master internship: Alvaro Mateos Gonzalez, Analysis of a Jump-Renewal Equation for Intracellular Subdiffusion, from Apr 2013 until Aug 2013, supervised by V. Calvez (Inria Numed) 66% and H. Berry 33%

• Master internship: Duc Thanh Phan, Clustering of DNA intervals based on descriptors computed from epigenetic profiles, from Feb 2013 until Jul 2013, co-supervised by C. Rigotti and Marion Leleu (Ecole Polytechnique Fédérale de Lausanne).

Juries

• Guillaume Beslon reviewed the HDR manuscript and participated to the HDR defense committee of Philippe Lopez, Univ. Paris 6 Pierre et Marie Curie, December 2013.

• Guillaume Beslon participated to the PhD defense committee of Guenola Drillon, Univ. Paris 6 Pierre et Marie Curie, March 2013.

• Guillaume Beslon reviewed the PhD manuscript and participated to the PhD defense committee of Guillaume Chérel, Univ. Paris 6 Pierre et Marie Curie, 2013.

• Guillaume Beslon reviewed the PhD manuscript and participated to the PhD defense committee of Thomas Garcia, Ecole Normale Supérieure de la rue d’Ulm, Paris, December 2013.

• Guillaume Beslon reviewed the PhD manuscript and participated to the PhD defense committee of Jean-Marc Montanier, Univ. Paris Sud, 2013.

• Hugues Berry reviewed the PhD manuscript and participated to the PhD defense committee of G. Detorakis, “Cortical Plasticity, Dynamic neural fields and self-organisation”, Nancy, October 2013.

• Hugues Berry reviewed the PhD manuscript and participated to the PhD defense committee of Visou ADY, “Développement et plasticité des connexions des cellules de Purkinje”, Paris Descartes University, November 2013.

• Eric Tannier reviewed the PhD manuscript and participated to the PhD defense committee of Thi Hau NGuyen from the University of Montpellier 2, on October 3, 2013.

• Eric Tannier reviewed the PhD manuscript and participated to the PhD defense committee of Guenola Drillon from the University of Paris 6, on March 25, 2013.

• Eric Tannier participated to the HDR defense committee of Nicolas Thierry-Mieg, from University of Grenoble 1, January 25, 2013.

• Christophe Rigotti reviewed the PhD manuscript and participated to the defense committee of Winn Voravuthikunchai, PhD, Univ. Caen Basse Normandie, 2013.

• Christophe Rigotti participated to the HDR defense committee of Nicolas Méger, HDR, Univ. de Savoie, Annecy, 2013.

Invited talks

• Guillaume Beslon was an invited speaker at the workshop “Games in evolution”, Ecole Normale de la rue d'Ulm, Paris, December 2013.

• Guillaume Beslon was an invited speaker of the Dyliss/Genscales groups, May 2013, Rennes, France.

• Hugues Berry was an invited speaker at the workshop "Complex Network Dynamics", March 25-26, 2013, Montpellier, France.

• Hugues Berry was an invited speaker at the workshop " Control of Self-Organizing Nonlinear Systems", August 28-30, Wittenberg (Berlin), Germany.

• Hugues Berry was an invited speaker at the workshop "BioImage Informatics", 8-9 July 2013, Curie Institute, Paris, France.

• Carole Knibbe was an invited speaker at the Evolyon workshop, November 21st 2013, Lyon.

• Carole Knibbe was an invited speaker at a FINOVI mini-symposium, June 20th 2013, Lyon.

• Christophe Rigotti gave an invited talk on "Spatiotemporal data mining" during "The Meetings of Digital Technologies" organized by ANR at the Cit ́e des Sciences et de l’Industrie, April 2013, Paris. Work in collaboration with N. Meger, C. Pothier, R. Andreoli, F. Lodge, M.-P. Doin, C. Lasserre and R. Jolivet.

• Christophe Rigotti gave an invited talk on "GFS-pattern extraction in satellite image time series: application to the monitoring of Mount Etna", Atelier Mesure de Déformations par Imagerie Spatiale, October 2013, Autrans. Work in collaboration with F. Lodge, N. Meger, L. Gueguen, C. Pothier, R. Andreoli, M.-P. Doin and M. Datcu.

• Hédi Soula was invited an invited speaker in the Seminar Sessions of ETHOS Rennes in December 2013.

• Eric Tannier was a keynote speaker at the IBC (Computational Biology Institute) in Montpellier in 2013.

• Eric Tannier was invited by the “Laboratoire d'Informatique Fondamentale” in Marseille for a talk in March 2013.