BONSAI - 2013 - Annual activity report

BONSAI

BONSAI - 2013

Project-Team Bonsai

Members

Overall Objectives

Presentation

Research Program

Combinatorial discrete models and algorithms
Discrete statistics and probability

Application Domains

Sequence processing for Next Generation Sequencing
Noncoding RNA
Genome structures
Nonribosomal peptides

Software and Platforms

YASS – Local homology search
RNA tools – RNA structure prediction and comparison
TFM-Explorer – Identification and analysis of transcription factor binding sites
RNAspace – A platform for noncoding RNA annotation
CGseq – A toolbox for comparative analysis
SortMeRNA – Metatranscriptome classification
Vidjil – Quantifying lymphocytes rearrangements in high-throughput sequencing data
Biomanycores.org – A community for bioinformatics on manycore processors
Norine – A resource for nonribosomal peptides
Crac – RNA-seq read analysis
GkArrays – Indexing high throughput sequencer reads

New Results

High-throughtput sequence processing
RNA algorithms
Genomic rearrangements
Nonribosomal peptides

Partnerships and Cooperations

Regional Initiatives
National Initiatives
International Initiatives
International Research Visitors

Dissemination

Scientific Animation
Teaching - Supervision - Juries

Bibliography

Publications of the year
References in notes

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2013 Project-Team Activity Report

BONSAI

Bioinformatics and Sequence Analysis

Research centre: Lille - Nord Europe

In partnership with: CNRS, Université des sciences et technologies de Lille (Lille 1)

In collaboration with: Laboratoire d'informatique fondamentale de Lille (LIFL)

Field: Digital Health, Biology and Earth

Theme: Computational Biology

Keywords: Computational Biology, Genomics, Next Generation Sequencing, RNA Annotation, Nonribosomal Peptides, Genome Rearrangement