BONSAI - 2014 - Annual activity report

BONSAI

BONSAI - 2014

Project-Team Bonsai

Members

Overall Objectives

Presentation

Research Program

Combinatorial discrete models and algorithms
Discrete statistics and probability

Application Domains

Sequence processing for Next Generation Sequencing
Noncoding RNA
Genome structures
Nonribosomal peptides

New Software and Platforms

SortMeRNA – Metatranscriptome classification
Vidjil – Quantifying lymphocyte rearrangements in high-throughput sequencing data
Norine – A resource for nonribosomal peptides
miRkwood –microRNAs in plant genomes
ProCARs

New Results

Highlights of the Year
High-throughtput sequence processing
RNA algorithms
Ancestral gene order reconstruction
Nonribosomal peptides

Bilateral Contracts and Grants with Industry

Bilateral Contracts with Industry

Partnerships and Cooperations

Regional Initiatives
National Initiatives
European Initiatives
International Initiatives
International Research Visitors

Dissemination

Promoting Scientific Activities
Teaching - Supervision - Juries
Popularization

Bibliography

Publications of the year
References in notes

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2014 Project-Team Activity Report

BONSAI

Bioinformatics and Sequence Analysis

Research centre: Lille - Nord Europe

In partnership with: CNRS, Université des sciences et technologies de Lille (Lille 1)

In collaboration with: Laboratoire d'informatique fondamentale de Lille (LIFL)

Field: Digital Health, Biology and Earth

Theme: Computational Biology

Keywords: Computational Biology, Genomics, Next Generation Sequencing, Rna Annotation, Nonribosomal Peptides, Genome Rearrangement