Bibliography

Major publications by the team in recent years

• 1E. Bresso, R. Grisoni, G. Marchetti, A.-S. Karaboga, M. Souchet, M.-D. Devignes, M. Smaïl-Tabbone.
  
  Integrative relational machine-learning for understanding drug side-effect profiles, in: BMC Bioinformatics, 2013, vol. 14, n^o 1, 11 p. [ DOI : 10.1186/1471-2105-14-207 ]
  
  http://hal.inria.fr/hal-00843914
• 2A. Coulet, F. Domenach, M. Kaytoue, A. Napoli.
  
  Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical Data, in: International Conference on Formal Concept Analysis, Dresden, Germany, Springer, May 2013.
  
  http://hal.inria.fr/hal-00880643
• 3V. Dufour-Lussier, F. Le Ber, J. Lieber, L. Martin.
  
  Case Adaptation with Qualitative Algebras, in: International Joint Conferences on Artificial Intelligence, Pékin, China, F. Rossi (editor), AAAI Press, August 2013, pp. 3002-3006.
  
  http://hal.inria.fr/hal-00871703
• 4Z. Dvořák, J.-S. Sereni, J. Volec.
  
  Subcubic triangle-free graphs have fractional chromatic number at most $14/5$, January 2013.
  
  http://hal.inria.fr/hal-00779634
• 5E. Gaillard, J. Lieber, Y. Naudet, E. Nauer.
  
  Case-Based Reasoning on E-Community Knowledge, in: 21st International Conference on Case-Based Reasoning, Saratoga Springs, NY, United States, Springer, 2013, vol. 7969, pp. 104-118. [ DOI : 10.1007/978-3-642-39056-2_8 ]
  
  http://hal.inria.fr/hal-00918518
• 6A. Ghoorah, M.-D. Devignes, M. Smaïl-Tabbone, D. Ritchie.
  
  KBDOCK 2013: A spatial classification of 3D protein domain family interactions, in: Nucleic Acids Research, November 2013.
  
  http://hal.inria.fr/hal-00920612
• 7N. Jay, G. Nuemi, M. Gadreau, C. Quantin.
  
  A data mining approach for grouping and analyzing trajectories of care using claim data: the example of breast cancer, in: BMC Medical Informatics and Decision Making, November 2013, vol. 13, n^o 1, 130 p. [ DOI : 10.1186/1472-6947-13-130 ]
  
  http://hal.inria.fr/inserm-00917359
• 8C. Low-Kam, C. Raïssi, M. Kaytoue, J. Pei.
  
  Mining Statistically Significant Sequential Patterns, in: IEEE International Conference on Data Mining, Dallas, United States, December 2013.
  
  http://hal.inria.fr/hal-00922255
• 9J.-F. Mari, E.-G. Lazrak, M. Benoît.
  
  Time space stochastic modelling of agricultural landscapes for environmental issues, in: Environmental Modelling and Software, March 2013, vol. 46, pp. 219-227. [ DOI : 10.1016/j.envsoft.2013.03.014 ]
  
  http://hal.inria.fr/hal-00807178
• 10M. Rouane-Hacene, M. Huchard, A. Napoli, P. Valtchev.
  
  Relational Concept Analysis: Mining Concept Lattices From Multi-Relational Data, in: Annals of Mathematics and Artificial Intelligence, January 2013, vol. 67, n^o 1, pp. 81-108. [ DOI : 10.1007/s10472-012-9329-3 ]
  
  http://hal.inria.fr/lirmm-00816300

Publications of the year

Doctoral Dissertations and Habilitation Theses

• 11E. Bresso.
  
  Organisation et exploitation des connaissances sur les réseaux d'interactions biomoléculaires pour l'étude de l'étiologie des maladies génétiques et la caractérisation des effets secondaires de principes actifs, Université de Lorraine, September 2013.
  
  http://hal.inria.fr/tel-00917934
• 12T. Meilender.
  
  Un wiki sémantique pour la gestion des connaissances décisionnelles - Application à la cancérologie, Université de Lorraine, June 2013.
  
  http://hal.inria.fr/tel-00919997

Articles in International Peer-Reviewed Journals

• 13N. Agrinier, C. Altieri, F. Alla, N. Jay, D. Dobre, N. Thilly, F. Zannad.
  
  Effectiveness of a multidimensional home nurse led heart failure disease management program-A French nationwide time-series comparison, in: International Journal of Cardiology, October 2013, vol. 168, n^o 4, pp. 3652-8. [ DOI : 10.1016/j.ijcard.2013.05.090 ]
  
  http://hal.inria.fr/hal-00903263
• 14E. Bresso, R. Grisoni, G. Marchetti, A.-S. Karaboga, M. Souchet, M.-D. Devignes, M. Smaïl-Tabbone.
  
  Integrative relational machine-learning for understanding drug side-effect profiles, in: BMC Bioinformatics, 2013, vol. 14, n^o 1, 11 p. [ DOI : 10.1186/1471-2105-14-207 ]
  
  http://hal.inria.fr/hal-00843914
• 15A. Carrieri, V. Pérez-Nueno, G. Lentini, D. Ritchie.
  
  Recent trends and future prospects in computational GPCR drug discovery: from virtual screening to polypharmacology, in: Current Topics in Medicinal Chemistry, 2013, vol. 13, n^o 9, pp. 1069-1097. [ DOI : 10.2174/15680266113139990028 ]
  
  http://hal.inria.fr/hal-00880351
• 16V. Coevoet, J. Fresson, R. Vieux, N. Jay.
  
  Socioeconomic deprivation and hospital length of stay: a new approach using area-based socioeconomic indicators in multilevel models, in: Medical Care, June 2013, vol. 51, n^o 6, pp. 548-54. [ DOI : 10.1097/MLR.0b013e3182928f84 ]
  
  http://hal.inria.fr/hal-00903258
• 17M. D'Aquin, J. Lieber, A. Napoli.
  
  Decentralized case-based reasoning and Semantic Web technologies applied to decision support in oncology, in: Knowledge Engineering Review, March 2013, vol. 28, n^o 4, pp. 425–449. [ DOI : 10.1017/S0269888913000027 ]
  
  http://hal.inria.fr/hal-00922080
• 18H. De Almeida, I. Bastos, B. Ribeiro, B. Maigret, J. Santana.
  
  New Binding Site Conformations of the Dengue Virus NS3 Protease Accessed by Molecular Dynamics Simulation, in: PLoS ONE, August 2013, vol. 8, n^o 8.
  
  http://hal.inria.fr/hal-00922971
• 19L. Ghemtio, V. I. Pèrez-Nueno, V. Leroux, Y. Assess, M. Souchet, L. Mavridis, B. Maigret, D. Ritchie.
  
  Recent trends and applications in 3D virtual screening, in: Combinatorial Chemistry & High Throughput Screening, November 2013, vol. 15, n^o 9, pp. 749-769.
  
  http://hal.inria.fr/hal-00923017
• 20A. Ghoorah, M.-D. Devignes, M. Smaïl-Tabbone, D. Ritchie.
  
  KBDOCK 2013: A spatial classification of 3D protein domain family interactions, in: Nucleic Acids Research, November 2013.
  
  http://hal.inria.fr/hal-00920612
• 21A. Ghoorah, M.-D. Devignes, M. Smaïl-Tabbone, D. Ritchie.
  
  Protein Docking Using Case-Based Reasoning, in: Proteins, October 2013, vol. 81, n^o 12, pp. 2150-2158. [ DOI : 10.1002/prot.24433 ]
  
  http://hal.inria.fr/hal-00880341
• 22S. Guessoum, M. T. Laskri, J. Lieber.
  
  RespiDiag: a Case-Based Reasoning System for the Diagnosis of Chronic Obstructive Pulmonary Disease, in: Expert Systems with Applications, February 2014, vol. 41, pp. 267–273.
  
  http://hal.inria.fr/hal-00912641
• 23T. V. Hoang, E. H. Barney Smith, S. Tabbone.
  
  Sparsity-based edge noise removal from bilevel graphical document images, in: International Journal on Document Analysis and Recognition, August 2013.
  
  http://hal.inria.fr/hal-00852418
• 24T. V. Hoang, X. Cavin, D. Ritchie.
  
  gEMfitter: A highly parallel FFT-based 3D density fitting tool with GPU texture memory acceleration, in: Journal of Structural Biology, September 2013. [ DOI : 10.1016/j.jsb.2013.09.010 ]
  
  http://hal.inria.fr/hal-00866871
• 25T. V. Hoang, X. Cavin, P. Schultz, D. Ritchie.
  
  gEMpicker: A Highly Parallel GPU-Accelerated Particle Picking Tool for Cryo-Electron Microscopy, in: BMC Structural Biology, October 2013.
  
  http://hal.inria.fr/hal-00872625
• 26T. V. Hoang, S. Tabbone.
  
  Errata and comments on "Generic orthogonal moments: Jacobi–Fourier moments for invariant image description", in: Pattern Recognition, April 2013, vol. 46, n^o 11, pp. 3148-3155. [ DOI : 10.1016/j.patcog.2013.04.011 ]
  
  http://hal.inria.fr/hal-00820279
• 27N. Jay, G. Nuemi, M. Gadreau, C. Quantin.
  
  A data mining approach for grouping and analyzing trajectories of care using claim data: the example of breast cancer, in: BMC Medical Informatics and Decision Making, November 2013, vol. 13, n^o 1, 130 p. [ DOI : 10.1186/1472-6947-13-130 ]
  
  http://hal.inria.fr/inserm-00917359
• 28A.-S. Karaboga, F. Petronin, G. Marchetti, M. Souchet, B. Maigret.
  
  Benchmarking of HPCC: A novel 3D molecular representation combining shape and pharmacophoric descriptors for efficient molecular similarity assessments, in: Journal of Molecular Graphics and Modelling, January 2013, vol. 41, pp. 20-30.
  
  http://hal.inria.fr/hal-00922973
• 29M. Lensink, I. Moal, P. Bates, P. Kastritis, A. Melquiond, E. Karaca, C. Schmitz, M. Van Dijk, A. Bonvin, M. Eisenstein, B. Jiménez-Garcí, S. Grosdidier, A. Solernou, L. Pérez-Cano, C. Pallar, J. Fernández-Recio, J. Xu, P. Muthu, K. Praneeth Kilambi, J. Gray, S. Grudinin, G. Derevyanko, J. Mitchell, J. Wieting, E. Kanamori, Y. Tsuchiya, Y. Murakami, J. Sarmiento, D. Standley, M. Shirota, K. Kinoshita, H. Nakamura, M. Chavent, D. Ritchie, H. Park, D. Ritchie, J. Ko, H. Lee, C. Seok, Y. Shen, D. Kozakov, S. Vajda, P. Kundrotas, I. Vakser, B. Pierce, H. Hwang, T. Vreven, Z. Weng, I. Buch, E. Farkash, H. Wolfson, M. Zacharias, S. Qin, H.-X. Zhou, S.-Y. Huang, X. Zou, J. Wojdyla, C. Kleanthous, S. Wodak.
  
  Blind prediction of interfacial water positions in CAPRI, in: Proteins, October 2013. [ DOI : 10.1002/prot.24439 ]
  
  http://hal.inria.fr/hal-00880345
• 30J.-F. Mari, E.-G. Lazrak, M. Benoît.
  
  Time space stochastic modelling of agricultural landscapes for environmental issues, in: Environmental Modelling and Software, March 2013, vol. 46, pp. 219-227. [ DOI : 10.1016/j.envsoft.2013.03.014 ]
  
  http://hal.inria.fr/hal-00807178
• 31P. Popov, D. Ritchie, S. Grudinin.
  
  DockTrina: Docking triangular protein trimers, in: Proteins: Structure, Function, and Genetics, January 2014, vol. 82, n^o 1, pp. 34-44. [ DOI : 10.1002/prot.24344 ]
  
  http://hal.inria.fr/hal-00880359
• 32J.-H. Ramaroson, F. Le Ber, B. Ramamonjisoa, D. Hervé.
  
  Treillis de Galois pour la fusion de connaissances spatiales sur des territoires villageois malgaches, in: Revue d'Intelligence Artificielle, 2013, vol. 2013, n^o 4-5, pp. 595-617.
  
  http://hal.inria.fr/hal-00862250
• 33M. Rouane-Hacene, M. Huchard, A. Napoli, P. Valtchev.
  
  Relational Concept Analysis: Mining Concept Lattices From Multi-Relational Data, in: Annals of Mathematics and Artificial Intelligence, January 2013, vol. 67, n^o 1, pp. 81-108. [ DOI : 10.1007/s10472-012-9329-3 ]
  
  http://hal.inria.fr/lirmm-00816300
• 34J.-S. Sereni, Z. Yilma.
  
  A Tight Bound on the Set Chromatic Number, in: Discussiones Mathematicae Graph Theory, 2013, vol. 33, n^o 2, pp. 461–465. [ DOI : 10.7151/dmgt.1679 ]
  
  http://hal.inria.fr/hal-00624323
• 35P. Torres, M. Valencia-Pabon.
  
  On the packing chromatic number of hypercubes, in: Electronic Notes in Discrete Mathematics, November 2013, vol. 44, n^o 5, pp. 263-268.
  
  http://hal.inria.fr/hal-00926875

Articles in National Peer-Reviewed Journals

• 36F. Kohler, N. Jay, F. Ducreau, G. Casanova, C. Kohler, A.-C. Benhamou.
  
  COURLIS (COURs en LIgne de Statistiques appliquées) : un MOOC francophone innovant, in: HEGEL, 2013, vol. 3, n^o 1, pp. 27-32. [ DOI : 10.4267/2042/49205 ]
  
  http://hal.inria.fr/hal-00903262

International Conferences with Proceedings

• 37M. Alam, M. Wudage Chekol, A. Coulet, A. Napoli, M. Smaïl-Tabbone.
  
  Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in Biology, in: DMoLD'13 - Data Mining on Linked Data Workshop (ECML/PKDD, 2013), Prague, Czech Republic, Springer, September 2013.
  
  http://hal.inria.fr/hal-00903450
• 38J. Baixeries, M. Kaytoue, A. Napoli.
  
  Computing Similarity Dependencies with Pattern Structures, in: The Tenth International Conference on Concept Lattices and their Applications - CLA 2013, La Rochelle, France, France, M. Ojeda-Aciego, J. Outrata (editors), CEUR Workshop Proceedings Vol. 1062, Karell Bertet, 2013, pp. 33-44.
  
  http://hal.inria.fr/hal-00922592
• 39S. Basu Roy, I. Lykourentzou, S. Thirumuruganathan, S. Amer-Yahia, G. Das.
  
  Crowds, not Drones: Modeling Human Factors in Interactive Crowdsourcing, in: DBCrowd 2013 - VLDB Workshop on Databases and Crowdsourcing, Riva del Garda, Trento, Italy, R. Cheng, A. D. Sarma, S. Maniu, P. Senellart (editors), CEUR Workshop Proceedings, CEUR-WS, August 2013, pp. 39-42.
  
  http://hal.inria.fr/hal-00923542
• 40A. Buzmakov, E. Egho, N. Jay, S. O. Kuznetsov, A. Napoli, C. Raïssi.
  
  FCA and pattern structures for mining care trajectories, in: Workshop FCA4AI, "What FCA can do for artificial intelligence?", Beijing, China, August 2013.
  
  http://hal.inria.fr/hal-00910290
• 41A. Buzmakov, E. Egho, N. Jay, S. O. Kuznetsov, A. Napoli, C. Raïssi.
  
  On Projections of Sequential Pattern Structures (with an application on care trajectories), in: The Tenth International Conference on Concept Lattices and Their Applications - CLA'13, La Rochelle, France, October 2013.
  
  http://hal.inria.fr/hal-00910300
• 42A. Buzmakov, E. Egho, N. Jay, S. O. Kuznetsov, A. Napoli, C. Raïssi.
  
  The representation of sequential patterns and their projections within Formal Concept Analysis, in: Workshop Notes for LML (PKDD), Prague, Czech Republic, September 2013.
  
  http://hal.inria.fr/hal-00910266
• 43A. Buzmakov, A. Neznanov.
  
  Practical Computing with Pattern Structures in FCART Environment, in: Workshop FCA4AI, "What FCA can do for artificial intelligence?", Beijing, China, August 2013.
  
  http://hal.inria.fr/hal-00910296
• 44M. W. Chekol, M. Alam, A. Napoli.
  
  A Study on the Correspondence between FCA and ELI Ontologies, in: CLA - The Tenth International Conference on Concept Lattices and Their Applications - 2013, La Rochelle, France, October 2013.
  
  http://hal.inria.fr/hal-00906757
• 45M. W. Chekol, J. Euzenat, P. Genevès, N. Layaïda.
  
  Evaluating and benchmarking SPARQL query containment solvers, in: Proc. 12th International semantic web conference (ISWC), Sydney, Australia, H. Alani, L. Kagal, A. Fokoue, P. Groth, C. Biemann, J. X. Parreira, L. Aroyo, N. Noy, C. Welty, K. Janowicz (editors), Lecture notes in computer science, Springer Verlag, 2013, vol. 8219, pp. 408-423. [ DOI : 10.1007/978-3-642-41338-4_26 ]
  
  http://hal.inria.fr/hal-00917911
• 46M. W. Chekol, A. Napoli.
  
  A Study on the Correspondence between FCA and ELI Ontologies, in: ISWC - The 12th International Semantic Web Conference - 2013, Sydney, Australia, October 2013.
  
  http://hal.inria.fr/hal-00906736
• 47M. W. Chekol, A. Napoli.
  
  An FCA Framework for Knowledge Discovery in SPARQL Query Answers, in: The 12th International Semantic Web Conference, Sydney, Australia, October 2013.
  
  http://hal.inria.fr/hal-00881080
• 48V. Codocedo, I. Lykourentzou, H. Astudillo, A. Napoli.
  
  Using pattern structures to support information retrieval with Formal Concept Analysis, in: International Workshop "What can FCA do for Artificial Intelligence?", Beijing, China, S. O. Kuznetsov, A. Napoli, S. Rudolph (editors), August 2013, pp. 15-24.
  
  http://hal.inria.fr/hal-00880020
• 49A. Coulet, F. Domenach, M. Kaytoue, A. Napoli.
  
  Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical Data, in: International Conference on Formal Concept Analysis, Dresden, Germany, Springer, May 2013.
  
  http://hal.inria.fr/hal-00880643
• 50M. D'Aquin, N. Jay.
  
  Interpreting data mining results with linked data for learning analytics: motivation, case study and directions, in: LAK - Third International Conference on Learning Analytics and Knowledge - 2013, Leuven, Belgium, ACM, 2013, pp. 155–164. [ DOI : 10.1145/2460296.2460327 ]
  
  http://hal.inria.fr/hal-00903259
• 51V. Dufour-Lussier, F. Le Ber, J. Lieber, L. Martin.
  
  Case Adaptation with Qualitative Algebras, in: International Joint Conferences on Artificial Intelligence, Pékin, China, F. Rossi (editor), AAAI Press, August 2013, pp. 3002-3006.
  
  http://hal.inria.fr/hal-00871703
• 52E. Egho, N. Jay, C. Raïssi, G. Nuemi, C. Quantin, A. Napoli.
  
  An approach for mining care trajectories for chronic diseases, in: 14th Conference on Artificial Intelligence in Medicine, Murcia, Spain, Springer, June 2013, vol. 7885.
  
  http://hal.inria.fr/hal-00883117
• 53E. Gaillard, J. Lieber, Y. Naudet, E. Nauer.
  
  Case-Based Reasoning on E-Community Knowledge, in: 21st International Conference on Case-Based Reasoning, Saratoga Springs, NY, United States, Springer, 2013, vol. 7969, pp. 104-118. [ DOI : 10.1007/978-3-642-39056-2_8 ]
  
  http://hal.inria.fr/hal-00918518
• 54T. Guyet, F. Le Ber, S. Da Silva, C. Lavigne.
  
  Comparaison des chemins de Hilbert adaptatif et des graphes de voisinage pour la caractérisation d'un parcellaire agricole, in: Conférence Extraction et Gestion de Connaissances, Rennes, France, January 2014.
  
  http://hal.inria.fr/hal-00916964
• 55N. Jay, M. D'Aquin.
  
  Linked Data and Online Classifications to Organise Mined Patterns in Patient Data, in: Proceedings of the AMIA 2013 Annual Symposium, Washington, United States, 2013, in press.
  
  http://hal.inria.fr/hal-00903261
• 56C. Low-Kam, C. Raïssi, M. Kaytoue, J. Pei.
  
  Mining Statistically Significant Sequential Patterns, in: IEEE International Conference on Data Mining, Dallas, United States, December 2013.
  
  http://hal.inria.fr/hal-00922255
• 57M. Rouane-Hacene, M. Huchard, A. Napoli, P. Valtchev.
  
  Soundness and Completeness of Relational Concept Analysis, in: ICFCA'2013: 11th International Conference on Formal Concept Analysis, Dresden, Germany, P. Cellier, F. Distel, B. Ganter (editors), Lecture Notes in Computer Science, Springer Netherlands, May 2013, vol. 7880, pp. 228-243. [ DOI : 10.1007/978-3-642-38317-5_15 ]
  
  http://hal.inria.fr/lirmm-00833506
• 58R. Stanley, H. Astudillo, V. Codocedo, A. Napoli.
  
  A Conceptual-KDD approach and its application to cultural heritage, in: Concept Lattices and their Applications, La Rochelle, France, M. Ojeda-Aciego, J. Outrata (editors), L3i laboratory, University of La Rochelle, October 2013, pp. 163-174.
  
  http://hal.inria.fr/hal-00880002
• 59M. T. Tang, Y. Toussaint.
  
  A Collaborative Approach for FCA-Based Knowledge Extraction, in: CLA - The Tenth International Conference on Concept Lattices and Their Applications - 2013, La Rochelle, France, October 2013.
  
  http://hal.inria.fr/hal-00906814

National Conferences with Proceedings

• 60J. Cojan, V. Dufour-Lussier, A. Hermann, F. Le Ber, J. Lieber, E. Nauer, G. Personeni.
  
  Révisor : un ensemble de moteurs d'adaptation de cas par révision des croyances, in: JIAF - Septièmes Journées de l'Intelligence Artificielle Fondamentale - 2013, Aix-en-Provence, France, June 2013.
  
  http://hal.inria.fr/hal-00856487
• 61A. Coulet, F. Domenach, M. Kaytoue, A. Napoli.
  
  Using pattern structures for analyzing ontology-based annotations of biomedical data, in: Septièmes Journées d'Intelligence Artificielle Fondamentale, Aix-en-Provence, France, S. Konieczny, N. Maudet, D. Habet, V. Risch (editors), LSIS and LIF Marseille, June 2013, pp. 97–106.
  
  http://hal.inria.fr/hal-00922392
• 62E. Egho, C. Raïssi, T. Calders, N. Jay, A. Napoli.
  
  Vers une mesure de similarité pour les séquences complexes, in: Extraction et gestion des connaissances (EGC'2013), Toulouse, France, Cépaduès, February 2013, pp. 335-340.
  
  http://hal.inria.fr/hal-00885965
• 63R. Hafiane, M. Smaïl-Tabbone, M.-D. Devignes, S. Tabbone.
  
  Clustering optimal de gènes fondé sur une mesure de similarité sémantique, in: 10ème édition de la COnférence en Recherche d'Information et Applications - CORIA 2013, Neufchâtel, Switzerland, C. Berrut (editor), 2013, 15 p.
  
  http://hal.inria.fr/hal-00920700
• 64A. Hermann, M. Ducassé, S. Ferré, J. Lieber.
  
  Une approche fondée sur le raisonnement à partir de cas pour la mise à jour interactive d'objets du Web sémantique, in: 21ème atelier Français de Raisonnement à Partir de Cas (RàPC), Lille, France, 2013.
  
  http://hal.inria.fr/hal-00910294
• 65G. Personeni, A. Hermann, J. Lieber.
  
  Adaptation de cas propositionnels par réparations fondées sur des connaissances d'adaptation, in: RàPC - 21ème atelier Français de Raisonnement à Partir de Cas - 2013, Lille, France, V. Dufour-Lussier, E. Gaillard, A. Hermann (editors), 2013.
  
  http://hal.inria.fr/hal-00910276
• 66M. T. Tang, Y. Toussaint.
  
  Vers un processus continu d'extraction de connaissances à partir de textes, in: IC - The 24e journées francophones d'Ingénierie des Connaissances - 2013, Lille, France, July 2013.
  
  http://hal.inria.fr/hal-00861865

Conferences without Proceedings

• 67G. Canals, A. Cordier, E. Desmontils, L. Infante-Blanco, E. Nauer.
  
  Collaborative Knowledge Acquisition under Control of a Non-Regression Test System, in: Workshop on Semantic Web Collaborative Spaces, Montpellier, France, May 2013, 14 p.
  
  http://hal.inria.fr/hal-00880347
• 68E. Gaillard, J. Lieber, Y. Naudet, E. Nauer.
  
  Raisonner sur des connaissances provenant d'une e-communauté, in: Ingénierie des connaissances 2013, Lille, France, 2013.
  
  http://hal.inria.fr/hal-00918540

Scientific Books (or Scientific Book chapters)

• 69A. Cordier, V. Dufour-Lussier, J. Lieber, E. Nauer, F. Badra, J. Cojan, E. Gaillard, L. Infante-Blanco, P. Molli, A. Napoli, H. Skaf-Molli.
  
  Taaable: a Case-Based System for personalized Cooking, in: Successful Case-based Reasoning Applications-2, S. Montani, L. C. Jain (editors), Studies in Computational Intelligence, Springer, January 2014, vol. 494, pp. 121-162. [ DOI : 10.1007/978-3-642-38736-4_7 ]
  
  http://hal.inria.fr/hal-00912767
• 70D. Ritchie, V. Pérez-Nueno.
  
  ParaFit, in: Scaffold Hopping in Medicinal Chemistry, N. Brown (editor), Methods and Principles in Medicinal Chemistry, Wiley, 2013, vol. 58.
  
  http://hal.inria.fr/hal-00880352

Books or Proceedings Editing

• 71C. Carpineto, S. O. Kuznetsov, A. Napoli (editors)
  
  FCAIR 2012 Formal Concept Analysis Meets Information Retrieval Workshop co-located with the 35th European Conference on Information Retrieval (ECIR 2013) March 24, 2013, Moscow, Russia, CEUR Proceedings, 2013, vol. 977, 157 p.
  
  http://hal.inria.fr/hal-00922617
• 72S. O. Kuznetsov, A. Napoli, S. Rudolph (editors)
  
  International Workshop "What can FCA do for Artificial Intelligence?" (FCA4AI at IJCAI 2013, Beijing, China, August 4 2013), CEUR Proceedings, 2013, vol. 1058, 58 p.
  
  http://hal.inria.fr/hal-00922616

Internal Reports

• 73A. P. Dove, J. R. Griggs, R. J. Kang, J.-S. Sereni.
  
  Supersaturation in the Boolean lattice, March 2013.
  
  http://hal.inria.fr/hal-00802000
• 74Z. Dvořák, J.-S. Sereni, J. Volec.
  
  Subcubic triangle-free graphs have fractional chromatic number at most $14/5$, January 2013.
  
  http://hal.inria.fr/hal-00779634
• 75D. Rautenbach, J.-S. Sereni.
  
  Transversals of Longest Paths and Cycles, February 2013.
  
  http://hal.inria.fr/hal-00793271
• 76J.-S. Sereni, J. Volec.
  
  A note on acyclic vertex-colorings, December 2013.
  
  http://hal.inria.fr/hal-00921122

Other Publications

• 77F. Bonomo, O. Schaudt, M. Stein, M. Valencia-Pabon.
  
  b-coloring is NP-hard on co-bipartite graphs and polytime solvable on tree-cographs, 2013.
  
  http://hal.inria.fr/hal-00926924
• 78V. Dufour-Lussier, B. Guillaume, G. Perrier.
  
  Parsing Coordination Extragrammatically, 2013, accepted for publication in LNAI (Lecture Notes in Artificial Intelligence).
  
  http://hal.inria.fr/hal-00921033

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• 95A. Ghoorah.
  
  Extraction de Connaissances pour la Modelisation tri-dimensionnelle de l'Interactome Structural, Université de Lorraine, November 2012.
  
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• 96P. Hitzler, M. Krötsch, S. Rudolph.
  
  Foundations of Semantic Web Technologies, CRC Press, Boca raton (FL), 2009.
• 97H. Hwang, T. Vreven, J. Janin, Z. Weng.
  
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• 98C. Jonquet, P. LePendu, S. Falconer, A. Coulet, N. Noy, M. A. Musen, N. H. Shah.
  
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• 99M. Kaytoue, S. O. Kuznetsov, J. Macko, W. Meira, A. Napoli.
  
  Mining Biclusters of Similar Values with Triadic Concept Analysis, in: The Eighth International Conference on Concept Lattices and their Applications - CLA 2011, Nancy, France, A. Napoli, V. Vychodil (editors), Inria Nancy Grand Est - LORIA, 2011.
  
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• 100M. Kaytoue, S. O. Kuznetsov, A. Napoli.
  
  Revisiting Numerical Pattern Mining with Formal Concept Analysis, in: Twenty second International Joint Conference on Artificial Intelligence - IJCAI 2011, Barcelona, Spain, 2011.
  
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• 101M. Kaytoue, F. Marcuola, A. Napoli, L. Szathmary, J. Villerd.
  
  The Coron System, in: 8th International Conference on Formal Concept Analsis (ICFCA) - Supplementary Proceedings, L. Boumedjout, P. Valtchev, L. Kwuida, B. Sertkaya (editors), 2010, pp. 55–58.
• 102T. Leviandier, A. Alber, F. Le Ber, H. Piégay.
  
  Comparison of statistical algorithms for detecting homogeneous river reaches along a longitudinal continuum, in: Geomorphology, 2012, vol. 138, n^o 1, pp. 130-144. [ DOI : 10.1016/j.geomorph.2011.08.031 ]
  
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• 103J. Lieber, M. D'Aquin, F. Badra, A. Napoli.
  
  Modeling adaptation of breast cancer treatment decision protocols in the KASIMIR project, in: Applied Intelligence, 2008, vol. 28, n^o 3, pp. 261–274.
• 104J. Lieber, A. Napoli, L. Szathmary, Y. Toussaint.
  
  First Elements on Knowledge Discovery guided by Domain Knowledge (KDDK), in: Concept Lattices and Their Applications (CLA 06), S. B. Yahia, E. M. Nguifo, R. Belohlavek (editors), Lecture Notes in Artificial Intelligence 4923, Springer, Berlin, 2008, pp. 22–41.
• 105Y. Liu, A. Coulet, P. LePendu, N. H. Shah.
  
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• 107J.-F. Mari, F. Le Ber, E.-G. Lazrak, M. Benoît, C. Eng, A. Thibessard, P. Leblond.
  
  Using Markov Models to Mine Temporal and Spatial Data, in: New Fundamental Technologies in Data Mining, K. Funatsu, K. Hasegawa (editors), Intech, 2011, pp. 561–584.
  
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• 108A. Napoli.
  
  A smooth introduction to symbolic methods for knowledge discovery, in: Handbook of Categorization in Cognitive Science, H. Cohen, C. Lefebvre (editors), Elsevier, Amsterdam, 2005, pp. 913–933.
• 109M. Pupin, M. Smaïl-Tabbone, P. Jacques, M.-D. Devignes, V. Leclère.
  
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• 110V. Pérez-Nueno, D. Ritchie, J. Borrell, J. Teixidó.
  
  Clustering and Classifying Diverse HIV Entry Inhibitors Using a Novel Consensus Shape-Based Virtual Screening Approach: Further Evidence for Multiple Binding Sites within the CCR5 Extracellular Pocket, in: Journal of Chemical Information and Modeling, 2008, vol. 48, n^o 11, pp. 2146–2165.
• 111C. Raïssi, J. Pei, T. Kister.
  
  Computing Closed Skycubes, in: Proceedings of the VLDB Endowment, September 2010, vol. 3, n^o 1, pp. 838–847.
  
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• 112D. Ritchie, A. Ghoorah, L. Mavridis, V. Venkatraman.
  
  Fast Protein Structure Alignment using Gaussian Overlap Scoring of Backbone Peptide Fragment Similarity, in: Bioinformatics, October 2012, vol. 28, n^o 24, pp. 3274-3281. [ DOI : 10.1093/bioinformatics/bts618 ]
  
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  Protein Docking Using Spherical Polar Fourier Correlations, in: Proteins: Structure, Function and Genetics, 2000, vol. 39, n^o 2, pp. 178–194.
• 114D. Ritchie, V. Venkatraman.
  
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• 115V. Roth, J. Laub, M. Kawanabe, J. M. Buhmann.
  
  Optimal cluster preserving embedding of nonmetric proximity data, in: IEEE Trans. Pattern Analysis and Machine Intelligence, 2003, vol. 25.
• 116N. Schaller, E.-G. Lazrak, P. Martin, J.-F. Mari, C. Aubry, M. Benoît.
  
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• 117L. Szathmary.
  
  Symbolic Data Mining Methods with the Coron Platform, Université Henri Poincaré (Nancy 1), 2006.
• 118L. Szathmary, P. Valtchev, A. Napoli, R. Godin.
  
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• 119L. Szathmary, P. Valtchev, A. Napoli, R. Godin.
  
  Efficient Vertical Mining of Frequent Closures and Generators, in: Proceedings of the 8th International Symposium on Intelligent Data Analysis (IDA-2009), Lyon, France, N. Adams, J.-F. Boulicaut, C. Robardet, A. Siebes (editors), Lecture Notes in Computer Science 5772, Springer, Berlin, 2009, pp. 393–404.
• 120L. Szathmary, P. Valtchev, A. Napoli.
  
  Finding Minimal Rare Itemsets and Rare Association Rules, in: Proceedings of the 4th International Conference on Knowledge Science, Engineering and Management (KSEM-2010), Belfast, Northern Ireland, UK, Y. Bi, M.-A. Williams (editors), Lecture Notes in Artificial Intelligence 6291, Springer, Berlin, 2010, pp. 16–27.
• 121L. Szathmary, P. Valtchev, A. Napoli.
  
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• 122V. Venkatraman, D. Ritchie.
  
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• 124Y. Zhang, J. Skolnick.
  
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• 125U. von Luxburg.
  
  A tutorial on spectral clustering, in: Statistics and Computing, 2007, vol. 17, n^o 4, pp. 395-416.