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Bibliography

Major publications by the team in recent years
  • 1F. Bonomo, O. Schaudt, M. Stein, M. Valencia-Pabon.

    b-coloring is NP-hard on co-bipartite graphs and polytime solvable on tree-cographs, in: Algorithmica, 2014, 17 p, An extended abstract of this paper appears in the proceedings of ISCO symposium, LNCS 8596, pp. 100-11, 2014. [ DOI : 10.1007/s00453-014-9921-5 ]

    https://hal.archives-ouvertes.fr/hal-01102516
  • 2V. Codocedo, A. Napoli.

    A Proposition for Combining Pattern Structures and Relational Concept Analysis, in: Formal Concept Analysis - 12th International Conference, ICFCA 2014, Cluj-Napoca, Romania, June 10-13, 2014. Proceedings, Cluj-Napoca, Romania, June 2014, pp. 96 - 111. [ DOI : 10.1007/978-3-319-07248-7_8 ]

    https://hal.inria.fr/hal-01095870
  • 3J. Cojan, J. Lieber.

    Applying Belief Revision to Case-Based Reasoning, in: Computational Approaches to Analogical Reasoning: Current Trends, Studies in Computational Intelligence, Springer, 2014, vol. 548, pp. 133 - 161. [ DOI : 10.1007/978-3-642-54516-0_6 ]

    https://hal.inria.fr/hal-01095344
  • 4A. Cordier, V. Dufour-Lussier, J. Lieber, E. Nauer, F. Badra, J. Cojan, E. Gaillard, L. Infante-Blanco, P. Molli, A. Napoli, H. Skaf-Molli.

    Taaable: a Case-Based System for personalized Cooking, in: Successful Case-based Reasoning Applications-2, S. Montani, L. C. Jain (editors), Studies in Computational Intelligence, Springer, January 2014, vol. 494, pp. 121-162. [ DOI : 10.1007/978-3-642-38736-4_7 ]

    https://hal.inria.fr/hal-00912767
  • 5M. Couceiro, E. Lehtonen, K. Schölzel.

    Hypomorphic Sperner Systems and Non-Reconstructible Functions, in: Order, July 2014, 42 p. [ DOI : 10.1007/s11083-014-9330-z ]

    https://hal.archives-ouvertes.fr/hal-01090540
  • 6S. Da Silva, F. Le Ber, C. Lavigne.

    Structure Analysis of Hedgerows with Respect to Perennial Landscape Lines in Two Contrasting French Agricultural Landscapes, in: International Journal of Agricultural and Environmental Information Systems (IJAEIS), 2014, vol. 5, no 1, 19 p. [ DOI : 10.4018/ijaeis.2014010102 ]

    https://hal.archives-ouvertes.fr/hal-01057108
  • 7M.-D. Devignes, Y. Moreau.

    ECCB 2014: The 13th European Conference on Computational Biology, in: Bioinformatics, September 2014, vol. 30, no 17, 4 p. [ DOI : 10.1093/bioinformatics/btu512 ]

    https://hal.inria.fr/hal-01097339
  • 8E. Egho, C. Raïssi, T. Calders, N. Jay, A. Napoli.

    On measuring similarity for sequences of itemsets, in: Data Mining and Knowledge Discovery, July 2014, 33 p. [ DOI : 10.1007/s10618-014-0362-1 ]

    https://hal.inria.fr/hal-01094383
  • 9R. Gerbier, V. Leroux, P. Couvineau, R. Alvear-Perez, B. Maigret, C. Llorens-Cortes, X. Iturrioz.

    New structural insights into the apelin receptor: identification of key residues for apelin binding, in: The FASEB Journal, January 2015, vol. 29, no 1, pp. 314-322.

    https://hal.inria.fr/hal-01101857
  • 10A. Ghoorah, M.-D. Devignes, M. Smaïl-Tabbone, D. Ritchie.

    KBDOCK 2013: A spatial classification of 3D protein domain family interactions, in: Nucleic Acids Research, January 2014, vol. 42, no D1, pp. 389-395.

    https://hal.inria.fr/hal-00920612
  • 11G. Personeni, S. Daget, C. Bonnet, P. Jonveaux, M.-D. Devignes, M. Smaïl-Tabbone, A. Coulet.

    Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability, in: Data Integration in the Life Sciences - 10th International Conference, DILS 2014, Lisbon, Portugal, E. R. Helena Galhardas (editor), Lecture Notes in Computer Science, Springer, July 2014, vol. 8574, pp. 16 - 31. [ DOI : 10.1007/978-3-319-08590-6_2 ]

    https://hal.inria.fr/hal-01095591
  • 12Y. Xiao, C. Mignolet, J.-F. Mari, M. Benoît.

    Modeling the spatial distribution of crop sequences at a large regional scale using land-cover survey data: A case from France, in: Computers and Electronics in Agriculture, March 2014, vol. 012, pp. 51-63.

    https://hal.inria.fr/hal-00967890
Publications of the year

Doctoral Dissertations and Habilitation Theses

Articles in International Peer-Reviewed Journals

  • 17J. Baixeries, M. Kaytoue, A. Napoli.

    Characterizing functional dependencies in formal concept analysis with pattern structures, in: Annals of Mathematics and Artificial Intelligence, 2014, vol. 72, pp. 129 - 149. [ DOI : 10.1007/s10472-014-9400-3 ]

    https://hal.inria.fr/hal-01101107
  • 18A. Berry, A. Gutierrez, M. Huchard, A. Napoli, A. Sigayret.

    Hermes: a simple and efficient algorithm for building the AOC-poset of a binary relation, in: Annals of Mathematics and Artificial Intelligence, 2014, vol. ISSN, no 72, pp. 45 - 71. [ DOI : 10.1007/s10472-014-9418-6 ]

    https://hal.inria.fr/hal-01101144
  • 19F. Bonomo, O. Schaudt, M. Stein, M. Valencia-Pabon.

    b-coloring is NP-hard on co-bipartite graphs and polytime solvable on tree-cographs, in: Algorithmica, 2014, 17 p, An extended abstract of this paper appears in the proceedings of ISCO symposium, LNCS 8596, pp. 100-11, 2014. [ DOI : 10.1007/s00453-014-9921-5 ]

    https://hal.archives-ouvertes.fr/hal-01102516
  • 20A. Buzmakov, S. O. Kuznetsov, A. Napoli.

    Is Concept Stability a Measure for Pattern Selection?, in: procedia computer science, 2014, vol. 31, pp. 918 - 927. [ DOI : 10.1016/j.procs.2014.05.344 ]

    https://hal.inria.fr/hal-01095914
  • 21T. Caradec, M. Pupin, A. Vanvlassenbroeck, M.-D. Devignes, M. Smaïl-Tabbone, P. Jacques, V. Leclère.

    Prediction of Monomer Isomery in Florine: A Workflow Dedicated to Nonribosomal Peptide Discovery, in: PLoS ONE, January 2014, vol. 9, no 1, e85667. [ DOI : 10.1371/journal.pone.0085667 ]

    https://hal.archives-ouvertes.fr/hal-01090619
  • 22V. Codocedo, I. Lykourentzou, A. Napoli.

    A semantic approach to concept lattice-based information retrieval, in: Annals of Mathematics and Artificial Intelligence, October 2014, vol. 72, pp. 169 - 195. [ DOI : 10.1007/s10472-014-9403-0 ]

    https://hal.inria.fr/hal-01095859
  • 23M. Couceiro, E. Lehtonen.

    A survey on the arity gap, in: Journal of Multiple-Valued Logic and Soft Computing, 2015, vol. 24, no 1–4, pp. 223–249.

    https://hal.archives-ouvertes.fr/hal-01093666
  • 24M. Couceiro, E. Lehtonen.

    On the arity gap of finite functions : results and applications, in: Journal of Multiple-Valued Logic and Soft Computing, 2015, 15 p.

    https://hal.archives-ouvertes.fr/hal-01093929
  • 25M. Couceiro, E. Lehtonen, K. Schölzel.

    Hypomorphic Sperner Systems and Non-Reconstructible Functions, in: Order, July 2014, 42 p. [ DOI : 10.1007/s11083-014-9330-z ]

    https://hal.archives-ouvertes.fr/hal-01090540
  • 26M. Couceiro, E. Lehtonen, K. Schölzel.

    A complete classification of equational classes of threshold functions included in clones, in: RAIRO Operations Research, 2015, vol. 49, no 1, pp. 39-66, forthcoming. [ DOI : 10.1051/ro/2014034 ]

    https://hal.archives-ouvertes.fr/hal-01090621
  • 27M. Couceiro, E. Lehtonen, K. Schölzel.

    Set-reconstructibility of Post classes, in: Discrete Applied Mathematics, 2015, 8 p, arXiv admin note: text overlap with arXiv:1306.5578.

    https://hal.archives-ouvertes.fr/hal-01090618
  • 28M. Couceiro, E. Lehtonen, T. Waldhauser.

    Additive decomposition schemes for polynomial functions over fields, in: Novi Sad J. Math. , 2014, vol. 44, no 2, 16 p.

    https://hal.archives-ouvertes.fr/hal-01090554
  • 29M. Couceiro, E. Lehtonen, T. Waldhauser.

    On equational definability of function classes, in: Journal of Multiple-Valued Logic and Soft Computing, 2015, vol. 24, no 1–4, pp. 203–222.

    https://hal.archives-ouvertes.fr/hal-01093668
  • 30M. Couceiro, I. G. Rosenberg, L. Haddad.

    Partial clones containing all Boolean monotone self-dual partial functions, in: Journal of Multiple-Valued Logic and Soft Computing, 2015, 10 p.

    https://hal.archives-ouvertes.fr/hal-01093942
  • 31M. Couceiro, T. Waldhauser.

    Pseudo-polynomial functions over finite distributive lattices, in: Fuzzy Sets and Systems, 2014, vol. 239, pp. 21-34. [ DOI : 10.1016/j.fss.2012.09.007 ]

    https://hal.archives-ouvertes.fr/hal-01090562
  • 32S. Da Silva, F. Le Ber, C. Lavigne.

    Structure Analysis of Hedgerows with Respect to Perennial Landscape Lines in Two Contrasting French Agricultural Landscapes, in: International Journal of Agricultural and Environmental Information Systems (IJAEIS), 2014, vol. 5, no 1, 19 p. [ DOI : 10.4018/ijaeis.2014010102 ]

    https://hal.archives-ouvertes.fr/hal-01057108
  • 33M.-D. Devignes, Y. Moreau.

    ECCB 2014: The 13th European Conference on Computational Biology, in: Bioinformatics, September 2014, vol. 30, no 17, 4 p. [ DOI : 10.1093/bioinformatics/btu512 ]

    https://hal.inria.fr/hal-01097339
  • 34E. Egho, N. Jay, C. Raïssi, D. Ienco, P. Poncelet, M. Teisseire, A. Napoli.

    A contribution to the discovery of multidimensional patterns in healthcare trajectories, in: Journal of Intelligent Information Systems, April 2014, vol. 42, pp. 283 - 305. [ DOI : 10.1007/s10844-014-0309-4 ]

    https://hal.inria.fr/hal-01094377
  • 35E. Egho, C. Raïssi, T. Calders, N. Jay, A. Napoli.

    On measuring similarity for sequences of itemsets, in: Data Mining and Knowledge Discovery, July 2014, 33 p. [ DOI : 10.1007/s10618-014-0362-1 ]

    https://hal.inria.fr/hal-01094383
  • 36B. Fuchs, J. Lieber, A. Mille, A. Napoli.

    Differential adaptation: An operational approach to adaptation for solving numerical problems with CBR, in: Knowledge-Based Systems, 2014, vol. 68, pp. 103 - 114. [ DOI : 10.1016/j.knosys.2014.03.009 ]

    https://hal.inria.fr/hal-01101145
  • 37R. Gerbier, V. Leroux, P. Couvineau, R. Alvear-Perez, B. Maigret, C. Llorens-Cortes, X. Iturrioz.

    New structural insights into the apelin receptor: identification of key residues for apelin binding, in: The FASEB Journal, January 2015, vol. 29, no 1, pp. 314-322.

    https://hal.inria.fr/hal-01101857
  • 38A. Ghoorah, M.-D. Devignes, M. Smaïl-Tabbone, D. Ritchie.

    KBDOCK 2013: A spatial classification of 3D protein domain family interactions, in: Nucleic Acids Research, January 2014, vol. 42, no D1, pp. 389-395.

    https://hal.inria.fr/hal-00920612
  • 39S. Guessoum, M. T. Laskri, J. Lieber.

    RespiDiag: a Case-Based Reasoning System for the Diagnosis of Chronic Obstructive Pulmonary Disease, in: Expert Systems with Applications, February 2014, vol. 41, pp. 267–273.

    https://hal.inria.fr/hal-00912641
  • 40D. Hervé, J.-H. Ramaroson, A. Randrianarison, F. Le Ber.

    Comment les paysans du corridor forestier de Fianarantsoa (Madagascar) dessinent-ils leur territoire ? Des cartes individuelles pour confronter les points de vue, in: Cybergeo : Revue européenne de géographie / European journal of geography, 2014, document 681.

    https://hal.archives-ouvertes.fr/hal-01057112
  • 41M. Kaytoue, S. O. Kuznetsov, J. Macko, A. Napoli.

    Biclustering meets triadic concept analysis, in: Annals of Mathematics and Artificial Intelligence, 2014, vol. 70, pp. 55 - 79. [ DOI : 10.1007/s10472-013-9379-1 ]

    https://hal.inria.fr/hal-01101143
  • 42A. Napoli.

    Preface to the special issue on "Concept Lattice and their Applications" (CLA-2011), in: Annals of Mathematics and Artificial Intelligence, 2014, vol. 70, pp. 1 - 3. [ DOI : 10.1007/s10472-013-9390-6 ]

    https://hal.inria.fr/hal-01101104
  • 43P. Popov, D. Ritchie, S. Grudinin.

    DockTrina: Docking triangular protein trimers, in: Proteins: Structure, Function, and Genetics, January 2014, vol. 82, no 1, pp. 34-44. [ DOI : 10.1002/prot.24344 ]

    https://hal.inria.fr/hal-00880359
  • 44V. Pérez-Nueno, A. S. Karaboga, M. Souchet, D. Ritchie.

    GES Polypharmacology Fingerprints: A Novel Approach for Drug Repositioning, in: Journal of Chemical Information and Modeling, February 2014, vol. 54, no 3, pp. 720-734. [ DOI : 10.1021/ci4006723 ]

    https://hal.inria.fr/hal-01092928
  • 45L. Szathmary, P. Valtchev, A. Napoli, R. Godin, A. Boc, V. Makarenkov.

    A fast compound algorithm for mining generators, closed itemsets, and computing links between equivalence classes, in: Annals of Mathematics and Artificial Intelligence, 2014, vol. 70, pp. 81 - 105. [ DOI : 10.1007/s10472-013-9372-8 ]

    https://hal.inria.fr/hal-01101140
  • 46Y. Xiao, C. Mignolet, J.-F. Mari, M. Benoît.

    Modeling the spatial distribution of crop sequences at a large regional scale using land-cover survey data: A case from France, in: Computers and Electronics in Agriculture, March 2014, vol. 012, pp. 51-63.

    https://hal.inria.fr/hal-00967890

International Conferences with Proceedings

  • 47M. Alam, A. Napoli.

    Defining Views with Formal Concept Analysis for Understanding SPARQL Query Results, in: Proceedings of the Eleventh International Conference on Concept Lattices and Their Applications, Košice, Slovakia, October 2014.

    https://hal.inria.fr/hal-01089770
  • 48M. Alam, A. Napoli.

    Lattice-Based View Access: A way to Create Views over SPARQL Query for Knowledge Discovery, in: What can FCA do for Artificial Intelligence? (Third FCA4AI Workshop), Prague, Czech Republic, August 2014.

    https://hal.inria.fr/hal-01089777
  • 49M. Alam, A. Napoli.

    Lattice-Based Views over SPARQL Query Results, in: Proceedings of the 1st Workshop on Linked Data for Knowledge Discovery co-located with European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD 2014), Nancy, France, September 2014.

    https://hal.inria.fr/hal-01089774
  • 50J. Baixeries, M. Kaytoue, A. Napoli.

    Characterization of Database Dependencies with FCA and Pattern Structures, in: AIST - Third International Conference, Analysis of Images, Social Networks and Texts, Yekaterinburg, Russia, Communications in Computer and Information Science, Springer, 2014, vol. 436, pp. 3 - 14. [ DOI : 10.1007/978-3-319-12580-0_1 ]

    https://hal.inria.fr/hal-01101147
  • 51G. Bosc, M. Kaytoue, C. Raïssi, J.-F. Boulicaut, P. Tan.

    Mining Balanced Sequential Patterns in RTS Games 1, in: ECAI 2014 - 21st European Conference on Artificial Intelligence, Prague, Czech Republic, August 2014. [ DOI : 10.3233/978-1-61499-419-0-975 ]

    https://hal.inria.fr/hal-01100933
  • 52A. Buzmakov, S. O. Kuznetsov, A. Napoli.

    Concept Stability as a Tool for Pattern Selection, in: FCA4AI 2014. What can FCA do for Artificial Intelligence?, Praque, Czech Republic, August 2014.

    https://hal.inria.fr/hal-01095903
  • 53A. Buzmakov, S. O. Kuznetsov, A. Napoli.

    On Evaluating Interestingness Measures for Closed Itemsets, in: 7th European Starting AI Researcher Symposium (STAIRS 2014), Prague, Czech Republic, J. L. Ulle Endriss (editor), Proceedings of the 7th European Starting AI Researcher Symposium (STAIRS 2014), 2014, vol. 264, pp. 71 - 80. [ DOI : 10.3233/978-1-61499-421-3-71 ]

    https://hal.inria.fr/hal-01095927
  • 54A. Buzmakov, S. O. Kuznetsov, A. Napoli.

    Scalable Estimates of Concept Stability, in: 12th International Conference on Formal Concept Analysis (ICFCA 2014), Cluj-Napoca, Romania, C. S. Cynthia Vera Glodeanu (editor), Formal Concept Analysis, Springer, 2014, vol. 8478, pp. 157 - 172. [ DOI : 10.1007/978-3-319-07248-7_12 ]

    https://hal.inria.fr/hal-01095920
  • 55C. Chamard, E. Bresso, T. Boukobza, M.-D. Devignes, M. Smaïl-Tabbone, A. Chesnel, H. Dumond.

    Long chain alkylphenol mixture promotes mammary epithelial cell metaplastic phenotype through an estrogen receptor alpha 36 mediated mechanism, in: 23rd Biennial Congress of the European Association for Cancer Research, EACR-23, Munich, Germany, European Journal of cancer, July 2014, vol. 50, no Supplement 5, S118 p, Présentation Poster. [ DOI : 10.1016/S0959-8049(14)50435-2 ]

    https://hal.archives-ouvertes.fr/hal-01095429
  • 57V. Codocedo, A. Napoli.

    Bicluster enumeration using Formal Concept Analysis, in: What formal concept analysis can do for artificial intelligence? (FCA4AI 2014) Workshop at ECAI 2014, Prague, Czech Republic, August 2014.

    https://hal.inria.fr/hal-01095884
  • 58V. Codocedo, A. Napoli.

    Lattice-based biclustering using Partition Pattern Structures, in: ECAI 2014 - 21st European Conference on Artificial Intelligence - Including Prestigious Applications of Intelligent Systems (PAIS) 2014, Prague, Czech Republic, August 2014. [ DOI : 10.3233/978-1-61499-419-0-213 ]

    https://hal.inria.fr/hal-01095865
  • 59M. Couceiro, L. Haddad, T. Waldhauser, K. Schölzel.

    Relation Graphs and Partial Clones on a 2-Element Set, in: IEEE 44th International Symposium on Multiple-Valued Logic (ISMVL), Bremen , France, May 2014. [ DOI : 10.1109/ISMVL.2014.36 ]

    https://hal.archives-ouvertes.fr/hal-01090638
  • 60M. Couceiro, J.-L. Marichal.

    Quasi-Lovász extensions on bounded chains, in: IPMU - 15th International Conference on Information Processing and Management of Uncertainty in Knowledge-Based Systems, Montpellier, France, Communications in Computer and Information Science, Springer, July 2014, vol. 442. [ DOI : 10.1007/978-3-319-08795-5_21 ]

    https://hal.archives-ouvertes.fr/hal-01090634
  • 61V. Dufour-Lussier, A. Hermann, F. Le Ber, J. Lieber.

    Belief revision in the propositional closure of a qualitative algebra *, in: 14th International Conference on Principles of Knowledge Representation and Reasoning, Vienne, Austria, AAAI Press, July 2014, 4 p.

    https://hal.inria.fr/hal-01094264
  • 62E. Egho, C. Raïssi, N. Jay, A. Napoli.

    Mining Heterogeneous Multidimensional Sequential Patterns, in: European Conference on Artificial Intelligence, Prague, Czech Republic, France, August 2014, vol. 263, 6 p. [ DOI : 10.3233/978-1-61499-419-0-279 ]

    https://hal.inria.fr/hal-01094365
  • 63E. Gaillard, L. Infante-Blanco, J. Lieber, E. Nauer.

    Tuuurbine: A Generic CBR Engine over RDFS, in: Case-Based Reasoning Research and Development, Cork, Ireland, September 2014, vol. 8765, pp. 140 - 154. [ DOI : 10.1007/978-3-319-11209-1_11 ]

    https://hal.inria.fr/hal-01082372
  • 64E. Gaillard, J. Lieber, E. Nauer, A. Cordier.

    How Case-Based Reasoning on e-Community Knowledge Can Be Improved Thanks to Knowledge Reliability, in: Case-Based Reasoning Research and Development, Cork, Ireland, Ireland, Luc Lamontagne and Enric Plaza, September 2014, vol. 8765, pp. 155 - 169. [ DOI : 10.1007/978-3-319-11209-1_12 ]

    https://hal.inria.fr/hal-01082369
  • 65E. Gaillard, J. Lieber, E. Nauer.

    Case-Based Cooking with Generic Computer Utensils: Taaable Next Generation, in: Proceedings of the ICCBR 2014 Workshops, Cork, Ireland, David B. Leake and Jean Lieber, September 2014, no pp 89-100, 254 p.

    https://hal.archives-ouvertes.fr/hal-01082683
  • 66T. Guyet, F. Le Ber, S. Da Silva, C. Lavigne.

    Comparaison des chemins de Hilbert adaptatif et des graphes de voisinage pour la caractérisation d'un parcellaire agricole, in: Conférence Extraction et Gestion de Connaissances, Rennes, France, January 2014.

    https://hal.inria.fr/hal-00916964
  • 67M. Hassan, A. Coulet, Y. Toussaint.

    Learning Subgraph Patterns from text for Extracting Disease–Symptom Relationships, in: 1st International Workshop on Interactions between Data Mining and Natural Language Processing, Nancy, France, P. Cellier, T. Charnois, A. Hotho, S. Matwin, M.-F. Moens, Y. Toussaint (editors), CEUR-WS, September 2014, vol. 1202.

    https://hal.inria.fr/hal-01095595
  • 68P. Holat, M. Plantevit, C. Raïssi, N. Tomeh, T. Charnois, B. Crémilleux.

    Sequence Classification Based on Delta-Free Sequential Pattern, in: IEEE International Conference on Data Mining, Shenzhen, China, December 2014.

    https://hal.inria.fr/hal-01100929
  • 69M. Kaytoue, V. Codocedo, J. Baixeries, A. Napoli.

    Three Related FCA Methods for Mining Biclusters of Similar Values on Columns, in: Proceedings of the Eleventh International Conference on Concept Lattices and Their Applications, Kosice, Slovakia, October 2014.

    https://hal.inria.fr/hal-01095877
  • 70G. Personeni, S. Daget, C. Bonnet, P. Jonveaux, M.-D. Devignes, M. Smaïl-Tabbone, A. Coulet.

    ILP for Mining Linked Open Data: a biomedical Case Study, in: The 24th International Conference on Inductive Logic Programming (ILP 2014), Nancy, France, September 2014.

    https://hal.inria.fr/hal-01095597
  • 71G. Personeni, S. Daget, C. Bonnet, P. Jonveaux, M.-D. Devignes, M. Smaïl-Tabbone, A. Coulet.

    Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability, in: DILS - 10th International Conference on Data Integration in the Life Sciences, Lisbon, Portugal, E. R. Helena Galhardas (editor), Lecture Notes in Computer Science, Springer, July 2014, vol. 8574, pp. 16 - 31. [ DOI : 10.1007/978-3-319-08590-6_2 ]

    https://hal.inria.fr/hal-01095591
  • 72G. Personeni, A. Hermann, J. Lieber.

    Adapting Propositional Cases Based on Tableaux Repairs Using Adaptation Knowledge, in: International Conference on Case-Based Reasoning, Cork, Ireland, L. Lamontagne, E. Plaza (editors), Lecture Notes in Computer Science, Springer International Publishing, September 2014, vol. Case-Based Reasoning Research and Development, no 8765, pp. 390-404. [ DOI : 10.1007/978-3-319-11209-1_28 ]

    https://hal.inria.fr/hal-01092210
  • 73D. Rizzo, J.-F. Mari, E. Marraccini, E.-G. Lazrak.

    Agricultural landscape segmentation: a stochastic method to map heterogeneous variables, in: Advances in Spatial Typologies: How to move from concepts to practice?, Lisbon, Portugal, IALE-Europe Thematic Workshop 2014, July 2014.

    https://hal.inria.fr/hal-01098402

National Conferences with Proceedings

  • 74C. Chamard, E. Bresso, T. Boukobza, M.-D. Devignes, M. Smaïl-Tabbone, A. Chesnel, H. Dumond.

    Long chain alkylphenol mixture promotes mammary epithelial cell metaplastic phenotype through an ERalpha36-mediated mechanism, in: 8e Forum du Canceropôle Grand Est, Strasbourg, France, November 2014, Présentation Poster.

    https://hal.archives-ouvertes.fr/hal-01095763
  • 75V. Dufour-Lussier, A. Hermann, F. Le Ber, J. Lieber.

    Révision des croyances dans la clôture propositionnelle d'une algèbre qualitative, in: JIAF-2014 – Huitièmes Journées de l'Intelligence Artificielle Fondamentale, Angers, France, JIAF - Huitièmes Journées de l'Intelligence Artificielle Fondamentale, June 2014, 10 p.

    https://hal.inria.fr/hal-01093977

Scientific Books (or Scientific Book chapters)

  • 76Proceedings of ECCB 2014: The 13th European Conference on Computational Biology, Bioinformatics, Oxford University Press, Strasbourg, France, September 2014, vol. 30, no 17.

    https://hal.inria.fr/hal-01097346
  • 77J. Cojan, J. Lieber.

    Applying Belief Revision to Case-Based Reasoning, in: Computational Approaches to Analogical Reasoning: Current Trends, Studies in Computational Intelligence, Springer, 2014, vol. 548, pp. 133 - 161. [ DOI : 10.1007/978-3-642-54516-0_6 ]

    https://hal.inria.fr/hal-01095344
  • 78A. Cordier, V. Dufour-Lussier, J. Lieber, E. Nauer, F. Badra, J. Cojan, E. Gaillard, L. Infante-Blanco, P. Molli, A. Napoli, H. Skaf-Molli.

    Taaable: a Case-Based System for personalized Cooking, in: Successful Case-based Reasoning Applications-2, S. Montani, L. C. Jain (editors), Studies in Computational Intelligence, Springer, January 2014, vol. 494, pp. 121-162. [ DOI : 10.1007/978-3-642-38736-4_7 ]

    https://hal.inria.fr/hal-00912767
  • 79V. Dufour-Lussier, B. Guillaume, G. Perrier.

    Parsing Coordination Extragrammatically, in: Human Language Technology. Challenges for Computer Science and Linguistics. 5th Language and Technology Conference, LTC 2011, Poznan, Poland, November 25-27, 2011, Revised Selected Papers, Z. Vetulani, J. Mariani (editors), Springer International Publishing, July 2014, 12 p. [ DOI : 10.1007/978-3-319-08958-4_5 ]

    https://hal.inria.fr/hal-00921033

Books or Proceedings Editing

  • 80N. Jay, I. Tiddi, M. D’Aquin (editors)

    Proceedings of the Workshop on Linked Data for Knowledge Discovery (LD4KD 2014), CEUR Workshop Proceedings, Nancy, France, September 2014, vol. 1232, no 3.

    https://hal.archives-ouvertes.fr/hal-01101149
  • 81S. O. Kuznetsov, A. Napoli, S. Rudolph (editors)

    Proceedings of the International Workshop "What can FCA do for Artificial Intelligence?" (FCA4AI 2014), CEUR Proceedings, August 2014, vol. 1257, 100 p.

    https://hal.inria.fr/hal-01101150
  • 82D. B. Leake, J. Lieber (editors)

    Proceedings of the Workshops of the 22nd International Conference on Case-Based Reasoning, September 2014, 260 p.

    https://hal.inria.fr/hal-01097373
  • 83M. Minor, E. Nauer (editors)

    Proceedings of the Computer Cooking Contest Workshop at ICCBR 2014, Proceedings of the Workshops of the 22nd International Conference on Case-Based Reasoning, September 2014, 48 p.

    https://hal.inria.fr/hal-01095840

Internal Reports

Other Publications

  • 94F. Bonomo, G. Duran, A. Napoli, M. Valencia-Pabon.

    A one-to-one correspondence between potential solutions of the cluster deletion problem and the minimum sum coloring problem, and its application to P 4 -sparse graphs, May 2014, Paper submitted to a journal, 11/05/2014.

    https://hal.archives-ouvertes.fr/hal-01102515
  • 95F. Bonomo, G. Duran, M. Valencia-Pabon.

    Complexity of the cluster deletion problem on subclasses of chordal graphs and cographs , October 2014, Paper submitted to a Journal, 28/10/2014.

    https://hal.archives-ouvertes.fr/hal-01102512
  • 96F. Bonomo, I. Koch, P. Torres, M. Valencia-Pabon.

    k-tuple chromatic number of the cartesian product of graphs, November 2014.

    https://hal.archives-ouvertes.fr/hal-01103534
  • 97M. Couceiro, J.-L. Marichal, B. Teheux.

    Conservative median algebras, 2014.

    https://hal.archives-ouvertes.fr/hal-01090614
  • 98T. Guyet, S. Da Silva, C. Lavigne, F. Le Ber.

    Caractérisation d'un parcellaire agricole : comparaison des sacs de noeuds obtenus par un chemin de Hilbert adaptatif et un graphe de voisinage, January 2014, 13 p, Atelier FST "fouille de données spatiales et temporelles" associé à la conférence EGC, Rennes, 28 janvier 2014.

    https://hal.inria.fr/hal-01100583
  • 99G. Personeni, S. Daget, C. Bonnet, P. Jonveaux, M.-D. Devignes, M. Smaïl-Tabbone, A. Coulet.

    Mining Linked Open Data: a Case Study with Genes Responsible for Intellectual Disability, September 2014, ECCB'14 (European Conference on Computational Biology 2014).

    https://hal.inria.fr/hal-01092800
References in notes
  • 100F. Baader, D. Calvanese, D. McGuinness, D. Nardi, P. Patel-Schneider (editors)

    The Description Logic Handbook, Cambridge University Press, Cambridge, UK, 2003.
  • 101Y. Asses, A. Buzmakov, T. Bourquard, S. O. Kuznetsov, A. Napoli.

    A Hybrid Classification Approach based on FCA and Emerging Patterns - An application for the classification of biological inhibitors, in: CLA'12: The Ninth International Conference on Concept Lattices and Their Applications - 2012, Fuengirola, Spain, L. Szathmary, U. Priss (editors), October 2012.

    http://hal.inria.fr/hal-00761586
  • 102J. Baixeries, M. Kaytoue, A. Napoli.

    Computing Similarity Dependencies with Pattern Structures, in: The Tenth International Conference on Concept Lattices and their Applications - CLA 2013, La Rochelle, France, France, M. Ojeda-Aciego, J. Outrata (editors), CEUR Workshop Proceedings Vol. 1062, Karell Bertet, 2013, pp. 33-44.

    http://hal.inria.fr/hal-00922592
  • 103M. Barbut, B. Monjardet.

    Ordre et classification – Algèbre et combinatoire (2 tomes), Hachette, Paris, 1970.
  • 104S. Benabderrahmane, M. Smaïl-Tabbone, O. Poch, A. Napoli, M.-D. Devignes.

    IntelliGO: a new vector-based semantic similarity measure including annotation origin, in: BMC Bioinformatics, December 2010, vol. 11, no 1, 588 p. [ DOI : 10.1186/1471-2105-11-588 ]

    http://www.biomedcentral.com/1471-2105/11/588/abstract
  • 105R. Bendaoud, A. Napoli, Y. Toussaint.

    Formal Concept Analysis: A unified framework for building and refining ontologies, in: Knowledge Engineering: Practice and Patterns - Proceedings of the 16th International Conference EKAW, A. Gangemi, J. Euzenat (editors), Lecture Notes in Computer Science 5268, 2008, pp. 156–171.
  • 106H. M. Berman, T. Battistuz, T. N. Bhat, W. F. Bluhm, P. E. Bourne, K. Burkhardt, L. Iype, S. Jain, P. Fagan, J. Marvin, D. Padilla, V. Ravichandran, B. Schneider, N. Thanki, H. Weissig, J. D. Westbrook, C. Zardecki.

    The Protein Data Bank, in: Acta Crystallographica Section D-Biological Crystallography, 2002, vol. 58, pp. 899–907.
  • 107A. Buzmakov, E. Egho, N. Jay, S. O. Kuznetsov, A. Napoli, C. Raïssi.

    On Projections of Sequential Pattern Structures (with an application on care trajectories), in: The Tenth International Conference on Concept Lattices and Their Applications - CLA'13, La Rochelle, France, October 2013.

    http://hal.inria.fr/hal-00910300
  • 108A. Coulet, F. Domenach, M. Kaytoue, A. Napoli.

    Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical Data, in: International Conference on Formal Concept Analysis, Dresden, Germany, Springer, May 2013.

    http://hal.inria.fr/hal-00880643
  • 109M. D'Aquin, J. Lieber, A. Napoli.

    Decentralized case-based reasoning and Semantic Web technologies applied to decision support in oncology, in: Knowledge Engineering Review, March 2013, vol. 28, no 4, pp. 425–449. [ DOI : 10.1017/S0269888913000027 ]

    http://hal.inria.fr/hal-00922080
  • 110R. Feldman, J. Sanger.

    The Text Mining Handbook (Advanced Approaches in Analyzing Unstructured Data), Cambridge University Press, 2007.
  • 111R. D. Finn, J. Mistry, J. Tate, P. Coggill, A. Heger, J. E. Pollington, O. L. Gavin, P. Gunasekaran, G. Ceric, K. Forslund, L. Holm, E. L. L. Sonnhammer, S. R. Eddy, A. Bateman.

    The Pfam protein families database, in: Nucleic Acids Research, 2010, vol. 38, pp. D211–D222.
  • 112B. Ganter, S. O. Kuznetsov.

    Pattern Structures and Their Projections, in: Conceptual Structures: Broadening the Base, Proceedings of the 9th International Conference on Conceptual Structures, ICCS 2001, Stanford, CA, H. Delugach, G. Stumme (editors), Lecture Notes in Computer Science 2120, Springer, 2001, pp. 129–142.
  • 113B. Ganter, R. Wille.

    Formal Concept Analysis, Springer, Berlin, 1999.
  • 114A. Ghoorah, M.-D. Devignes, M. Smaïl-Tabbone, D. Ritchie.

    Spatial clustering of protein binding sites for template based protein docking, in: Bioinformatics, August 2011, vol. 27, no 20, pp. 2820-2827. [ DOI : 10.1093/bioinformatics/btr493 ]

    http://hal.inria.fr/inria-00617921
  • 115A. Ghoorah, M.-D. Devignes, M. Smaïl-Tabbone, D. Ritchie.

    Protein Docking Using Case-Based Reasoning, in: Proteins, October 2013, vol. 81, no 12, pp. 2150-2158. [ DOI : 10.1002/prot.24433 ]

    http://hal.inria.fr/hal-00880341
  • 116A. Ghoorah.

    Extraction de Connaissances pour la Modelisation tri-dimensionnelle de l'Interactome Structural, Université de Lorraine, November 2012.

    http://hal.inria.fr/tel-00762444
  • 117H. Hwang, T. Vreven, J. Janin, Z. Weng.

    Protein-protein docking benchmark version 4.0, in: Proteins: Structure Function and Bioinformatics, 2010, vol. 78, no 15, pp. 3111–3114.
  • 118C. Jonquet, P. LePendu, S. Falconer, A. Coulet, N. Noy, M. A. Musen, N. H. Shah.

    NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources, in: Journal of Journal of Web Semantics, Sep 2011, vol. 9, no 3, pp. 316–324, NIH Projet NCBO. [ DOI : 10.1016/j.websem.2011.06.005 ]

    http://hal-lirmm.ccsd.cnrs.fr/lirmm-00622155
  • 119M. Kaytoue, S. O. Kuznetsov, A. Napoli, S. Duplessis.

    Mining Gene Expression Data with Pattern Structures in Formal Concept Analysis, in: Information Science, 2011, vol. 181, no 10, pp. 1989–2001.
  • 120M. Kaytoue, F. Marcuola, A. Napoli, L. Szathmary, J. Villerd.

    The Coron System, in: 8th International Conference on Formal Concept Analsis (ICFCA) - Supplementary Proceedings, L. Boumedjout, P. Valtchev, L. Kwuida, B. Sertkaya (editors), 2010, pp. 55–58.
  • 121T. Leviandier, A. Alber, F. Le Ber, H. Piégay.

    Comparison of statistical algorithms for detecting homogeneous river reaches along a longitudinal continuum, in: Geomorphology, 2012, vol. 138, no 1, pp. 130-144. [ DOI : 10.1016/j.geomorph.2011.08.031 ]

    http://hal.inria.fr/hal-00640698
  • 122Y. Liu, A. Coulet, P. LePendu, N. H. Shah.

    Using ontology-based annotation to profile disease research, in: Journal of the American Medical Informatics Association, June 2012, vol. 19, no e1, pp. e177-e186. [ DOI : 10.1136/amiajnl-2011-000631 ]

    http://hal.inria.fr/hal-00752101
  • 123G. Macindoe, L. Mavridis, V. Venkatraman, M.-D. Devignes, D. Ritchie.

    HexServer: an FFT-based protein docking server powered by graphics processors, in: Nucleic Acids Research, May 2010, vol. 38, pp. W445-W449. [ DOI : 10.1093/nar/gkq311 ]
  • 124J.-F. Mari, F. Le Ber, E.-G. Lazrak, M. Benoît, C. Eng, A. Thibessard, P. Leblond.

    Using Markov Models to Mine Temporal and Spatial Data, in: New Fundamental Technologies in Data Mining, K. Funatsu, K. Hasegawa (editors), Intech, 2011, pp. 561–584.

    http://hal.inria.fr/inria-00566801/en
  • 125F. Pennerath, G. Niel, P. Vismara, P. Jauffret, C. Laurenço, A. Napoli.

    A graph-mining method for the evaluation of bond formability, in: ACS Journal of Chemical Information and Modeling, 2010, vol. 50, no 2, pp. 221–239.
  • 126V. Pérez-Nueno, D. Ritchie, J. Borrell, J. Teixidó.

    Clustering and Classifying Diverse HIV Entry Inhibitors Using a Novel Consensus Shape-Based Virtual Screening Approach: Further Evidence for Multiple Binding Sites within the CCR5 Extracellular Pocket, in: Journal of Chemical Information and Modeling, 2008, vol. 48, no 11, pp. 2146–2165.
  • 127C. Raïssi, J. Pei, T. Kister.

    Computing Closed Skycubes, in: Proceedings of the VLDB Endowment, September 2010, vol. 3, no 1, pp. 838–847.

    http://hal.inria.fr/inria-00610923/en
  • 128D. Ritchie, A. Ghoorah, L. Mavridis, V. Venkatraman.

    Fast Protein Structure Alignment using Gaussian Overlap Scoring of Backbone Peptide Fragment Similarity, in: Bioinformatics, October 2012, vol. 28, no 24, pp. 3274-3281. [ DOI : 10.1093/bioinformatics/bts618 ]

    http://hal.inria.fr/hal-00756813
  • 129D. Ritchie, G. Kemp.

    Protein Docking Using Spherical Polar Fourier Correlations, in: Proteins: Structure, Function and Genetics, 2000, vol. 39, no 2, pp. 178–194.
  • 130D. Ritchie, V. Venkatraman.

    Ultra-fast FFT protein docking on graphics processors, in: Bioinformatics, 2010, vol. 26, no 19, pp. 2398–2405. [ DOI : 10.1093/bioinformatics/btq444 ]

    http://hal.inria.fr/inria-00537988/en/
  • 131M. Rouane-Hacene, M. Huchard, A. Napoli, P. Valtchev.

    Relational Concept Analysis: Mining Concept Lattices From Multi-Relational Data, in: Annals of Mathematics and Artificial Intelligence, January 2013, vol. 67, no 1, pp. 81-108. [ DOI : 10.1007/s10472-012-9329-3 ]

    http://hal.inria.fr/lirmm-00816300
  • 132N. Schaller, E.-G. Lazrak, P. Martin, J.-F. Mari, C. Aubry, M. Benoît.

    Combining farmers' decision rules and landscape stochastic regularities for landscape modelling, in: Landscape Ecology, March 2012, vol. 27, no 3, pp. 433-446. [ DOI : 10.1007/s10980-011-9691-2 ]

    http://hal.inria.fr/hal-00656407
  • 133L. Szathmary.

    Symbolic Data Mining Methods with the Coron Platform, Université Henri Poincaré (Nancy 1), 2006.
  • 134Y. Zhang, J. Skolnick.

    TM-align: a protein structure alignment algorithm based on TM-score, in: Nucleic Acids Research, 2005, vol. 33, no 7, pp. 2302–2309.


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