Section: Dissemination

Research

Scientific events: organizing committees

Member of organizing committees

Table 8.

IBIS members	Conference, workshop, school	Date
Hidde de Jong, Johannes Geiselmann	BEeSy Conference on Perspectives in Environmental and Systems Biology, Grenoble	April 2015
Hidde de Jong	CompSysBio: Advanced Lecture Course on Computational Systems Biology, Aussois	April 2015
Delphine Ropers	Séminaires de l'IXXI, Grenoble	2015
Delphine Ropers	Séminaire de Modélisation du Vivant (SeMoVi), Lyon and Grenoble	2015

Scientific events: selection committees

Chair of conference program committees

Table 9.

IBIS member	Conference, workshop, school	Role
Eugenio Cinquemani	European Control Conference (ECC) 2015 and 2016	Associate editor
Hidde de Jong	International Conference on Intelligent Systems in Molecular Biology (ISMB) jointly held with European Conference on Computational Biology (ECCB) 2015 and ISMB 2016	Area chair

Member of conference program committees

Table 10.

IBIS member	Conference, workshop, program
Hidde de Jong	CMSB 2015, HSB 2015, FOSBE 2016

Journals

Member of editorial boards

Table 11.

IBIS member	Journal
Johannes Geiselmann	Frontiers in Microbiology (review editor)
Hidde de Jong	Journal of Mathematical Biology
Hidde de Jong	Biosystems
Hidde de Jong	ACM/IEEE Transactions on Computational Biology and Bioinformatics

Scientific evaluation and expertise

Table 12.

IBIS member	Organism	Role
Johannes Geiselmann	BGene	Member scientific advisory board
Johannes Geiselmann	ANR	Member of selection committee
Johannes Geiselmann	INRA	Member of scientific advisory committee Microbiology Microbiologie, Adaptation, Pathogénie
Johannes Geiselmann	UMR5240 CNRS-UCBL-INSA-BayerCropScience	Member scientific council
Johannes Geiselmann	ARC1, Rhône-Alpes region	Member scientific committee
Hidde de Jong	International Human Frontier Science Program (HFSP)	Member selection and review committees
Hidde de Jong	Microbiology and Food Chain Department, Inra	Member scientific council
Hidde de Jong	BGene	Member scientific advisory board
Delphine Ropers	IXXI, Complex Systems Institute in Lyon	Member scientific board

Recruitment committees

Table 13.

IBIS member	Organism	Recruitment
Johannes Geiselmann	INSA de Lyon	Professor
Delphine Ropers	Inria	Chargés de recherche (jury d'admission)
Delphine Ropers	INSA de Lyon	Assistant professor

Invited talks

Eugenio Cinquemani

Table 14.

Title	Event and location	Date
Reconstruction of promoter activity statistics from reporter protein population snapshot data	Presentation at 54th IEEE Conference on Decision and Control (CDC), Osaka, Japan	December 2015
Reconstructing statistics of promoter switching from reporter protein population snapshot data	Presentation at 4th International Workshop on Hybrid Systems Biology (HSB), Madrid, Spain	September 2015

Hidde de Jong

Table 15.

Title	Event and location	Date
Global physiological effects and the analysis of gene regulatory networks	Invited talk at Lorentz center workshop Integrated cell models, Leiden, the Netherlands	January 2015
Modeling gene regulatory networks by means of piecewise-linear models	Invited talk during Spring school on Sliding mode control: theory and applications, Aussois	June 2015
Integrated models of the cell: metabolism, gene expression, signalling	Tutorial at CompSysBio: Advanced Lecture Course on Computational Systems Biology, Aussois	March 2015
Analysis and control of bacterial regulatory networks	Seminar Centre for Research and Interdisciplinarity (CRI), INSERM, Paris, with Johannes Geiselmann and Delphine Ropers	June 2015
Accounting for global physiological effects in the analysis of gene regulatory networks	Seminar BrisSynBio, University of Bristol, UK	February 2015
Global physiological effects in the analysis of gene regulatory networks	Invited talk ETH Systems biology student retreat, Reichenau, Germany	September 2015

Johannes Geiselmann

Table 16.

Title	Event and location	Date
Analysis and control of bacterial regulatory networks	Seminar Centre for Research and Interdisciplinarity (CRI), INSERM, Paris, with Hidde de Jong and Delphine Ropers	June 2015
A synthetic growth switch and its biotechnological application	Presentation at BioSynSys Conference, Paris	September 2015
Control of bacterial growth	Seminar ENS Cachan	December 2015

Nils Giordano

Table 17.

Title	Event and location	Date
Understanding regulatory strategies for dynamical resource allocation in microorganisms	Presentation at CompSysBio (Advanced Lecture Course on Computational Systems Biology), Aussois	April 2015
Dynamical allocation of cellular resources as an optimal control problem: Novel insights into microbial growth strategies	Invited presentation at Séminaire de Modélisation du Vivant (SeMoVi), Grenoble	October 2015
Dynamical allocation of cellular resources as an optimal control problem: Novel insights into microbial growth strategies	Poster at Journée Annuelle des Doctorants de l'Ecole Doctorale CSV, Grenoble	October 2015

Stéphan Lacour

Table 18.

Title	Event and location	Date
Characterization of the Escherichia coli sigmaS core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis: regulation of ncRNA by the alternative sigmaS factor	Regulating with RNA in Bacteria and Archaea Conference, Cancun, Mexico	December 2015

Delphine Ropers

Table 19.

Title	Event and location	Date
Analysis and control of bacterial regulatory networks	Seminar Centre for Research and Interdisciplinarity (CRI), INSERM, Paris, with Hidde de Jong and Johannes Geiselmann	June 2015
Adaptation of E. coli growth to environmental cues: global control of gene expression and post-transcriptional regulation	CEA Grenoble	November 2015

Research administration

Table 20.

IBIS member	Committee	Role
Eugenio Cinquemani	Inria Grenoble - Rhône-Alpes	Member Commission des Emplois Scientifiques
Eugenio Cinquemani	Comité des Utilisateurs des Moyens Informatiques (CUMI), Inria Grenoble - Rhône-Alpes	Member
Johannes Geiselmann	Department of Biology, Université Joseph Fourier	Member scientific council
Hidde de Jong	Grenoble - Rhône-Alpes research centre, Inria	Member scientific council
Hidde de Jong	Conseil d'Orientation Scientifique et Technique (COST), Inria	Member working group on International Relations
Delphine Ropers	Référente chercheurs, Inria Grenoble - Rhône-Alpes
Delphine Ropers	Commission de Formation Permanente, Inria Grenoble - Rhône-Alpes	Member
Delphine Ropers	Inria	Member of Commission d'évaluation