GENSCALE - 2016 - Annual activity report

GENSCALE

Members

Overall Objectives

Research Program

Application Domains

New Software and Platforms

New Results

Bilateral Contracts and Grants with Industry

Partnerships and Cooperations

Dissemination

Bibliography

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Section: Dissemination

Licence : R. Andonov, Graph Algorithms, 60h, Univ. Rennes 1, France.
Licence : A. Mucherino, Java basis, 80h, L1, Univ. Rennes 1, France.
Master : A. Mucherino, R. Andonov, Operational Research, 78h, M1, Univ. Rennes 1, France.
Master : A. Mucherino, Introduction to Computational Systems and Networks, 42h, M1, Univ. Rennes 1, France.
Master : A. Mucherino, Object Oriented Programming, 40h, M1, Univ. Rennes 1, France.
Master : A. Mucherino, P. Peterlongo and R. Andonov, Algorithms on Sequences and Structures, 36h, M2, Univ. Rennes 1, France.
Master : A. Mucherino, Parallel Computing (in English), 18h, M1, Univ. Rennes 1, France.
Master : C. Lemaitre, Dynamical systems for biological networks, 20h, M2, Univ. Rennes 1, France.
Master : C. Lemaitre, P. Peterlongo, Algorithms on Sequences for Bioinformatics, 24h, M1, Univ. Rennes 1, France.
Master : P. Peterlongo, Experimental Bioinformactics, 12h, M1, ENS Rennes, France.
Master : D. Lavenier, Research training module, 24h, M1, Univ. Rennes 1, Rennes, France.
Master : R. Andonov, Advanced Algorithmics, 25h, Univ. Rennes 1, France.
Training : P. Durand, G. Rizk, GATB Programming Day, 8h (June 16th), Univ. Rennes 1, Rennes, France.
Training : P. Durand, G. Rizk, GATB Programming Day, 8h (May 9th), Institut Henri Poincaré, France.

E-learning
- Online tutorial : GATB-Core Online Training tool. http://gatb-core.gforge.inria.fr/training/
- discoSnp tutorial available from the discoSnp webpage: https://colibread.inria.fr/software/discosnp/

HdR : Pierre Peterlongo, Lire les lectures : analyse de données de séquençage, Univ. Rennes 1, 25/01/2016, [11] https://hal.inria.fr/tel-01278275.
PhD in progress : G. Benoit, New algorithms for comparative metagenomics, 01/11/2014, D. Lavenier and C. Lemaitre.
PhD in progress : A. Limasset, Algorithm for Genomics, 09/2014, D. Lavenier and P. Peterlongo.
PhD in progress : C. Guyomar, Bioinformatic tools and applications for metagenomics of bacterial communities associated to insects, 01/10/2015, C. Lemaitre and F. Legeai.
PhD in progress : C. Marchet, Nouvelles méthodologies pour l’assemblage de données de séquençage polymorphes, 01/10/2015, P. Peterlongo.
PhD in progress : P. Hoan Son, Data mining and bioinformatics, 01/2015, D. Lavenier and A. Termier.
PhD in progress : S. François, Combinatorial Optimization Approaches for Bioinformatics, 01/10/2016, R. Andonov.

President of Ph-D thesis jury. Phuong Do Viet, University of Montpellier [R. Andonov], Karel Brinda, University of Marne la Vallée [D. Lavenier]
Member of Ph-D thesis juries. Joseph Lucas, University Pierre et Marie Curie [C. Lemaitre].
Referee of Ph-D thesis. Cécile Monat, University of Montpellier [D. Lavenier], C. Vroland, University of Lille [P. Peterlongo].
Member of Ph-D thesis comitees. L. Ishi Soares de Lima, University of Lyon [C. Lemaitre], Yoann Aigu, University of Rennes [F. Legeai], Hélène Boulain, University of Rennes [F. Legeai], Chunxiang Hao, University of Rennes [D. Lavenier], Alix Mas, University of Rennes [P. Peterlongo], Pierre Charrier, University of Nantes [P. Peterlongo], Cervin Guyomar, University of Rennes [P. Peterlongo], Lea Siegwald, University of Lille [P. Peterlongo].

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