Section: Dissemination

Promoting Scientific Activities

Scientific Events Organisation

General Chair, Scientific Chair

• Workshop Colib'read. Scientific and practical organization [C. Lemaitre, C. Marchet, P. Peterlongo]

Scientific Events Selection

Chair of Conference Program Committees

• WCO16, Gdansk, Poland (co-chair) [A. Mucherino]

Member of the Conference Program Committees

• BIBM 2016: IEEE International Conference on Bioinformatics and Biomedicine [D. Lavenier]

• BIOKDD 2016: 15th International Workshop on Data Mining in Bioinformatics [D. Lavenier]

• ACM PASC16 Conference : Platform for Advanced Scientific Computing [D. Lavenier]

• RECOMB 2016 : International Conference on Research in Computational Molecular Biology [D. Lavenier]

• ECCB 2016 : 15th European Conference on Computational Biology [P. Peterlongo]

• SeqBio 2016 : Bioinformatics multidisciplinary workshop [P. Peterlongo]

• WACEBI 2016 : Workshop on Accelerator-Enabled Algorithms and Applications in Bioinformatics [D. Lavenier]

Reviewer

• RECOMB 2017 [R. Andonov, C. Lemaitre]

• ECCB 2016 [P. Peterlongo]

Journal

Reviewer - Reviewing Activities

• Algorithms for Molecular Biology [P. Peterlongo]

• Bioinformatics [D. Lavenier, P. Peterlongo]

• BMC Bioinformatics [P. Peterlongo]

• Drug Dicovery Today [D. Lavenier]

• Journal of Parallel and Distributed Computing [D. Lavenier]

• Plos One [D. Lavenier, R. Andonov]

• Journal of Biomedical and Health Informatics [D. Lavenier]

• Briefing in Bioinformatics [D. Lavenier]

• Theoretical Computer Science [P. Peterlongo]

• Fundamenta Informaticae, Integrated Computer-Aided Engineering (IOS Press) [A. Mucherino]

• COMPAG, Elsevier [A. Mucherino]

Invited Talks

• D. Lavenier, Parallel Processing of Sequencing Data, Conférence d’informatique en Parallélisme, Architecture et Système, Lorient, France, July 2016

• D. Lavenier GATB: A Genomic Analysis Tool Box for designing parallel and low memory fingerprint bioinformatics software, Pasteur Institut, Paris, France, Sep. 2016.

• D. Lavenier, Low memory fingerprint data structure for genomics, ENS Rennes, France, oct. 2016.

• D. Lavenier GATB: A Genome Analysis Tool Box for designing parallel and low memory footprint bioinformatics software, Workshop on Emerging Bioinformatics Applications for Microbial Ecogenomics, Brest, France, oct. 2016.

• C. Lemaitre, Comparing numerous metagenomics datasets, Laboratoire de Biométrie et Biologie Évolutive, Lyon, France, Nov. 2016.

• P. Peterlongo De novo comparison of (large number of) metagenomic samples, Metagenomics day, Billile, Lille, France June 2016.

• P. Peterlongo Finding SNPs de novo from reads , Bioadvection workshop, Napoli, Italy, June 2016.

• P. Peterlongo De novo comparison of (large number of) metagenomic samples, What are the technical challenges? what can we expect from this?, RCAM workshop - keynote speaker, The Hague, Netherlands, September 2016.

• P. Peterlongo Multiple Comparative Metagenomics using Multiset k-mer Counting, Pasteur Summer School 2016 In Metagenomics, September 2016.

• C. Lemaitre Comparaison (massive) de (nombreux) metagénomes. Passons par les kmers pour passer à l’échelle, Journée scientifique sur "le Microbiome" organisée par Biogenouest, Rennes, France, December 2016.

• F. Legeai Les analyses bioinformatiques pour les données épigénomiques, Atelier ChIP du réseau REacTION, Paris, France, December 2016.

• R. Andonov, Global Optimization Methods for Genome Scaffolding and Completing Genome Assemblies, Workshop on Graph Assembly Algorithms for omics data, Univ. Milano-Bicocca, Italy, November 18, 2016

Leadership within the Scientific Community

• P. Peterlongo. Animator of one of the scientific axes of the GDR BIM group of research.

• P. Peterlongo. Member of the SFBI board.

Scientific Expertise

• Expert for the MEI (International Expertise Mission), French Research Ministry [D. Lavenier]

• Member of the Scientific Council of BioGenOuest [D. Lavenier]

• Member of the Scientific Council of the Computational Biology Institute of Montpellier [D. Lavenier]

Research and Pedagogical Administration

• Member of the CoNRS, section 06, [D. Lavenier]

• Member of the local Inria Rennes CDT (Technologic Transfer Commission) [D. Lavenier]

• Member of the steering committee of the INRA BIPAA Platform (BioInformatics Platform for Agro-ecosystems Arthropods) [D. Lavenier]

• Member of the steering committee of The GenOuest Platform (Bioinformatics Platform of BioGenOuest) [D. Lavenier]

• Representative of the environnemental axis of UMR IRISA [C. Lemaitre]

• AGOS first secretary [P. Peterlongo]

• Organisation of the weekly seminar "Symbiose" [P. Peterlongo]

• Scientific Responsible for International Relationships at ISTIC [A. Mucherino]

• Member of "Commission Affaires Internationales" at University of Rennes 1 [A. Mucherino]

• In charge of the bachelor's degree in the computer science department of University of Rennes 1 (90 students) [R. Andonov]