Section: Dissemination

Teaching - Supervision - Committees

Teaching

Four members of the IBIS team are either full professor, associate professor or assistant professor at the Université Grenoble Alpes. They therefore have a full teaching service (at least 192 hours per year) and administrative duties related to the organization and evaluation of the university course programs on all levels (from BSc to PhD). Besides the full-time academic staff in IBIS, the following people have contributed to courses last year.

Eugenio Cinquemani

• Master: Stochastic modelling of gene regulatory networks, M2, BIM, INSA de Lyon (6 h)

• Master: Statistics for systems biology, M1, Master Approches Interdisciplinaires du Vivant, CRI/Université Paris Descartes (24 h, also in charge of 24 h of practicals)

• Master: Modelling and identification of metabolic networks, M1, Phelma, INP Grenoble (4 h)

Hidde de Jong

• Master: Modeling and simulation of gene regulatory networks, M2, BIM, INSA de Lyon (20 h)

• Master: Integrated models of the cell: metabolism, gene expression, signalling, M2, ENS Paris (6 h)

• Master: Integrated models of the cell: metabolism, gene expression, signalling, M2, Institut de Technologie et d'Innovation, Paris Sciences Lettres (PSL) (6 h)

Delphine Ropers

• Master: Modelling in systems biology, M1, Phelma, INP Grenoble (16 h)

• Master: Modeling and simulation of genetic regulatory networks, M1, Université Grenoble Alpes (9 h)

• Master: Modeling and simulation of genetic regulatory networks, M2, INSA de Toulouse (4 h)

Supervision

• PhD defended: Stefano Casagranda, Analysis and control of models of gene regulatory networks. Supervisors: Jean-Luc Gouzé (BIOCORE) and Delphine Ropers

• PhD defended: Nils Giordano, Microbial growth control in shifting environments: Theoretical and experimental study of resource allocation in Escherichia coli. Supervisors: Hidde de Jong and Johannes Geiselmann

• PhD defended: Bernard Chelli Ponce de Leon, Quantitative study of the effects of low DnaA concentrations in Escherichia coli, using the uhp pathway as an inducible expression system. Supervisors: Irina Mihalcescu (Université Grenoble Alpes) and Johannes Geiselmann

• PhD in progress: Thibault Etienne, Analyse intégrative de la coordination entre stabilité des ARNm et physiologie cellulaire chez Escherichia coli. Supervisors: Delphine Ropers and Muriel Cocaign-Bousquet (INRA Toulouse)

• PhD in progress: Joël Espel, RNA engineering: Design of the dynamical folding of RNA and of RNA switches. Supervisors: Alexandre Dawid (Université Grenoble Alpes) and Johannes Geiselmann

PhD thesis committees, PhD advisory committees, and habilitation committees

PhD thesis committees

Table 24.

IBIS member	Role	PhD student	University	Date
Eugenio Cinquemani	Invité	Stefano Casagranda	Université Nice Sophia Antipolis	Jun 2017
Hidde de Jong	Président	Bernard Chelli Ponce de Leon	Université de Grenoble	Mar 2017
Hidde de Jong	Directeur de thèse	Nils Giordano	Université de Grenoble	Mar 2017
Hidde de Jong	Rapporteur	Mathias Weyder	Université de Toulouse	Mar 2017
Johannes Geiselmann	Rapporteur	Stanislas Thiriet-Rupert	Université du Mans	Jan 2017
Johannes Geiselmann	Président	Defne Dalkara	Université de Grenoble	Jan 2017
Johannes Geiselmann	Directeur de thèse	Nils Giordano	Université de Grenoble	Mar 2017
Johannes Geiselmann	Directeur de thèse	Bernard Chelli Ponce de Leon	Université de Grenoble	Mar 2017
Johannes Geiselmann	Rapporteur	Lionel Uhl	Université de Marseille	Apr 2017
Johannes Geiselmann	Rapporteur	Zoran Marinkovic	Université Paris Diderot	Nov 2017
Stephan Lacour	Examinateur	Benjamin Diel	Université de Lyon	Sep 2017
Stephan Lacour	Examinateur	Sophie Bouillet	Université Aix-Marseille	Dec 2017
Delphine Ropers	Directrice de thèse	Stefano Casagranda	Université Nice Sophia Antipolis	Jun 2017
Delphine Ropers	Examinateur	Guillaume Madelaine	Université de Lille	Mar 2017

Habilitation (HDR) committees

Table 25.

IBIS member	Role	PhD student	University	Date
Hidde de Jong	Rapporteur	Elisabeth Rémy	Université Aix-Marseille	Avr 2017

PhD advisory committees

Table 26.

IBIS member	PhD student	University
Eugenio Cinquemani	Luis Pereira	Université Nice Sophia Antipolis
Stephan Lacour	Alice Berry	Université de Grenoble
Stephan Lacour	Simon Léonard	Université Claude Bernard de Lyon

Teaching adminstration

Yves Markowicz is director of the BSc department at Université Grenoble Alpes.

Michel Page is coordinator of the master Systèmes d'information et d'organisation at the Institut d'Adminstration des Entreprises (IAE), Université Grenoble Alpes.

Eugenio Cinquemani organizes a module on statistics in systems biology at CRI/Université Paris Descartes.

Delphine Ropers organizes a module on the mathematical modeling of biological systems at PHELMA, INP Grenoble.

Hidde de Jong organizes with Daniel Kahn a module on the modeling of genetic and metabolic networks at INSA de Lyon.