CAPSID - 2018 - Annual activity report

CAPSID

CAPSID - 2018

Project-Team Capsid

Team, Visitors, External Collaborators

Overall Objectives

Computational Challenges in Structural Biology

Research Program

Classifying and Mining Protein Structures and Protein Interactions
Integrative Multi-Component Assembly and Modeling

Application Domains

Biomedical Knowledge Discovery
Prokaryotic Type IV Secretion Systems
Protein-RNA Interactions

Highlights of the Year

New Software and Platforms

Hex
Kbdock
Kpax
Sam
gEMfitter
ECDM
GODM
BLADYG
CGC
GrAPFI
Platforms

New Results

Drug Targeting and Adverse Drug Side Effects
Docking Symmetrical Protein Structures
Multiple Flexible Protein Structure Alignments
Large-Scale Annotation of Protein Domains and Sequences
Distributed Protein Graph Processing
Flexible Docking of Protein-GAG Complexes
Stochastic Decision Trees for Similarity Computation

Partnerships and Cooperations

Regional Initiatives
National Initiatives
International Initiatives
International Research Visitors

Dissemination

Promoting Scientific Activities
Teaching - Supervision - Juries

Bibliography

Major publications
Publications of the year
References in notes

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Section: New Software and Platforms

Kbdock

Keyword: 3D interaction

Scientific Description: Kbdock is a database of 3D protein domain-domain interactions with a web interface.

Functional Description: The Kbdock database is built from a snapshot of the Protein Databank (PDB) in which all 3D structures are cut into domains according to the Pfam domain description. A web interface allows 3D domain-domain interactions to be compared by Pfam family.

Authors: Anisah Ghoorah, David Ritchie and Marie-Dominique Devignes
Contact: David Ritchie
URL: http://kbdock.loria.fr

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