FR

EN

Homepage Inria website
  • Inria login
  • The Inria's Research Teams produce an annual Activity Report presenting their activities and their results of the year. These reports include the team members, the scientific program, the software developed by the team and the new results of the year. The report also describes the grants, contracts and the activities of dissemination and teaching. Finally, the report gives the list of publications of the year.

  • Legal notice
  • Cookie management
  • Personal data
  • Cookies


Section: Dissemination

Teaching - Supervision - Juries

Teaching track responsibilities

  • Coordination of the doctoral school "Biology and Health" of University of Bretagne Loire, Rennes Site 1 [N. Théret]

  • Coordination of the master degree "Bioinformatics and genomics", Univ. Rennes1 [O. Dameron]

Course responsibilities

  • "Internship", Master 1 in Computer Sciences, Univ. Rennes 1 [C. Belleannée]

  • "Supervised machine learning", Master 2 in Computer Sciences, Univ Rennes 1 [F. Coste]

  • "Atelier bioinformatique", Licence 2 informatique, Univ. Rennes 1 [O. Dameron]

  • "Bioinformatique pour la génomique", 2nd year school of medicine, Univ. Rennes 1 [O. Dameron]

  • "Bases de mathématiques et probablité" and "Méthodes en informatique", Master1 in public health, Univ. Rennes 1 [O. Dameron]

  • "Intégration: Remise à niveau en informatique", Master 1 in bioinformatics, Univ. Rennes 1 [O. Dameron]

  • "Programmation en Python", Master 1 in Public Health, Univ. Rennes 1 [O. Dameron]

  • "Programmation impérative en Python", Master 1 in bioinformatics, Univ. Rennes 1 [O. Dameron]

  • "Système informatique GNU/Linux", Master 1 in bioinformatics, Univ. Rennes 1 [O. Dameron]

  • "Semantic Web and bio-ontologies", Master 2 in bioinformatics, Univ. Rennes 1 [O. Dameron]

  • "Internship", Master 2 in bioinformatics, Univ. Rennes 1 [O. Dameron]

  • Master: A. Siegel, Integrative and Systems biology, Master 2 in bioinformatics, Univ. Rennes 1 [A. Siegel]

  • Micro-environnement Cellulaire normal & pathologique, Master 2 in Biologie cellulaire et Moléculaire, Univ. Rennes 1 [N. Théret]

Teaching

  • Licence: C. Belleannée, Langages formels, 20h, L3 informatique, Univ. Rennes1, France.

  • Licence: C. Belleannée, Projet professionnel et communication, 16h, L1 informatique, Univ. Rennes1, France.

  • Licence: C. Belleannée, Enseignant référent, 20h, L1 informatique, Univ. Rennes1, France.

  • Licence: C. Belleannée, Spécialité informatique : Functional and immutable programming , 42h, L1 informatique, Univ. Rennes1, France

  • Licence: O. Dameron, Biostatistiques, 12h, 1st year school of medicine, Univ. Rennes 1, France

  • Licence: O. Dameron, Bioinformatique pour la génomique, 2h, 2nd year school of medicine, Univ. Rennes 1, France

  • Licence: O. Dameron, "Atelier bioinformatique", 8h, Licence 2 informatique, Univ. Rennes 1, France

  • Master: O. Dameron, "Intégration: Remise à niveau en informatique", 14h Master 1 in bioinformatics, Univ. Rennes 1, France

  • Licence: C. Frioux, Projet Python, 18h, L3 ENSAI, France.

  • Licence: C. Frioux, Techniques d'optimsiation, 12h, L3 ENSAI, France.

  • Licence: M. Louarn, Introduction à la BioInformatique, 2h, L2 Informatique, Univ. Rennes 1, France.

  • Licence: M. Louarn, TPs Python, 8h, L1 Biologie, Univ. Rennes 1, France.

  • Licence: H. Talibart, Programmation scientifique Python, 24h, L1, Rennes1, France.

  • Licence: M. Wery, TPs Python, 36h, L1 Biologie, Univ. Rennes 1, France

  • Master: O. Dameron, "Programmation impérative en Python", 82.25h Master 1 in bioinformatics, Univ. Rennes 1, France

  • Master: C. Belleannée, Programmation logique avec contraintes et algorithmes génétiques, 40h, M1 informatique, Univ. Rennes1, France.

  • Master: C. Belleannée, Algorithmique du texte et bioinformatique, 10h, M1 informatique, Univ. Rennes1, France

  • Master: L. Bourneuf, Projet, 20h, M1 Santé Publique, France.

  • Master: F. Coste, Supervised machine learning, 15h, M2 Computer Sciences, Univ Rennes 1, France

  • Master: O. Dameron, "Object-oriented programming", 20h Master 1 in bioinformatics, Univ. Rennes 1, France

  • Master: O. Dameron, "Système informatique GNU/Linux", 20h, Master 1 in bioinformatics, Univ. Rennes 1, France

  • Master: O. Dameron, 8h, "Internship", Master 1 in bioinformatics, Univ. Rennes 1

  • Master: O. Dameron, "Bases de mathématiques et probablité", 18.75h, Master1 in public health, Univ. Rennes 1

  • Master: O. Dameron, "Programmation impérative en Python", 3h Master 1 in public health, Univ. Rennes 1, France

  • Master: O. Dameron, 21h, "Semantic Web and bio-ontologies", Master 2 in bioinformatics, Univ. Rennes 1

  • Master: O. Dameron, 10h, "Internship", Master 2 in bioinformatics, Univ. Rennes 1

  • Master: C. Belleannée, 20h, "Internship", Master 1 Computer Sciences, Univ. Rennes 1, France

  • Master: M. Louarn, Informatique Médicale Avancée, 2h, M1 Médecine, Univ. Rennes 1, France.

  • Master: M. Louarn, Object-oriented programming, 25h, M2 bioinformatique et génomique, Univ. Rennes 1, France.

  • Master: A. Siegel, Integrative and Systems biology, 25h, M2, Univ. Rennes 1, France.

  • Doctorat: A. Siegel, Reasoning over biological systems with large-scale and incomplete data, 3h, Thematic Research School on “advances in Systems & Synthetic Biology”, Evry’18.

Supervision

  • PhD : Clémence Frioux, Investigating host-microbiota cooperation with gap-filling optimization problems., started in Oct. 2015, defended on Nov. 19 2018, supervised by A. Siegel [11].

  • PhD in progress : Yann Rivault, Analyse de trajectoires de soins à partir de bases de données médico-administratives : apport d'un enrichissement pas des connaissances biomédicales issues du Web des Données, started in Oct. 2015, defense expected 28th January 2019, supervised by O. Dameron and N. Lemeur.

  • PhD in progress : Lucas Bourneuf, Justifiable graph decomposition to assist biological network understanding, started in Oct. 2016, supervised by J. Nicolas.

  • PhD in progress : Hugo Talibart, Learning grammars with long-distance correlations on proteins, started in Nov. 2017, supervised by F. Coste and J. Nicolas.

  • PhD in progress : Mael Conan, Predictive approach to assess the genotoxicity of environmental contaminants during liver fibrosis, started in Oct. 2017, supervised by S. Langouet and A. Siegel.

  • PhD in progress: Marine Louarn, Intégration de données génomiques massives et hétérogènes, application aux mutations non-codantes dans le lymphome folliculaire, started in Oct. 2017, supervised by A. Siegel, T. Fest (CHU) and O. Dameron.

  • PhD in progress : Méline Wery, Methodology development in disease treatment projects. , started in Oct. 2017, supervised by O. Dameron, C. Bettembourg (Sanofi) and A. Siegel.

  • PhD in progress : Nicolas Guillaudeux, Comparer des structures de gènes pour la prédiction de transcrits isoformes codants et non-codants, started in Oct. 2018, supervised by O. Dameron, C. Belleannée and S. Blanquart.

  • PhD in progress : Pierre Vignet, Identification et conception expérimentale de nouveaux agents thérapeutiques à partir d'un modèle informatique des réseaux d’influence du TGF-β dans les pathologies hépatiques chroniques , started in Dec. 2018, supervised by N. Théret and A. Siegel.

Juries

  • Referee of Ph-D thesis. C. Biane, Univ Paris Saclay [A. Siegel]. A. Bonnafoux, ENS Lyon [A. Siegel]. B. Miraglio, Univ Nice [A. Siegel]. G Personeni, Univ. Lorraine [O. Dameron].

  • Member of Ph-D thesis juries. C. Marchet, Univ Rennes [A. Siegel]. M. Pichene, Univ. Rennes [A. Siegel].

  • Refererr of habilitation thesis juries. A. Baudot, Univ. Marseille.

  • Member of medicine doctorate juries A. El Matoutat [O. Dameron].

Interns

  • Internship, from Jan 2018 until Jun 2018. Supervised by I. Vigalatti and O. Dameron. Student: Guillaume Alviset. Subject: Selecting SPARQL endpoints for faster processing of federated queries.

  • Internship, from Jan 2018 until Jun 2018. Supervised by A. Siegel. Student: Aurelien Cornet. Subject: Inférence de réseaux biologiques multi-échelles.

  • Internship, from Apr 2018 until Jul 2018. Supervised by A. Siegel, F. Legeai and J. Bobe. Student: Clara Delahaye. Subject: Intégration des réseaux géniques de Oryzias latipes impliqués dans la fécondité et régulés par le microARN-202-5p.

  • Internship, from Apr 2018 until Jul 2018. Supervised by A. Siegel and R. Munoz. Student: Emile Dumont. Subject: Reconstruction du réseau métabolique de bactéries cellulolytiques du rumen : exploration des voies de dégradation de la cellulose et de l’hémicellulose.

  • Internship, from Jan 2018 until Jun 2018. Supervised by C. Frioux. Student: Enora Fremy. Subject: Etude du potentiel de coopération métabolique entre hôte et microbiote à l'échelle fonctionnelle.

  • Internship, from Jan 2018 until Jun 2018. Supervised by C. Belleannée and S. Blanquart. Student: Nicolas Guillaudeux. Subject: Prédiction de transcriptome : analyse comparative multi-gènes, orthologues.

  • Internship, from Apr 2018 until Jul 2018. Supervised by J. Got. Student: Teo Lemane. Subject: Curation du réseau métabolique de T. Lutea via des méthodes hétérogènes.

  • Internship, from Jan 2018 until Jul 2018. Supervised by N. Théret, J. Nicolas and L. Bourneuf. Student: Linh Chi Nguyen. Subject: Compression of large interaction graphs for the identification of protein modules in the extracellular matrix.