GENSCALE - 2018 - Annual activity report

GENSCALE

GENSCALE - 2018

Project-Team Genscale

Team, Visitors, External Collaborators

Overall Objectives

Genomic data processing
Life science partnerships

Research Program

Axis 1: Data Structure
Axis 2: Algorithms
Axis 3: Parallelism

Application Domains

Introduction
Health
Agronomy and Environment

Highlights of the Year

New Software and Platforms

GATB-Core
CARNAC-LR
MindTheGap
bcool

New Results

Data Structure
Algorithms & Methods
Optimisation
Parallelism
Benchmarks and Reviews
Bioinformatics Analysis

Bilateral Contracts and Grants with Industry

Bilateral Contracts with Industry
Bilateral Grants with Industry

Partnerships and Cooperations

Regional Initiatives
National Initiatives
European Initiatives
International Initiatives
International Research Visitors

Dissemination

Promoting Scientific Activities
Teaching - Supervision - Juries
Popularization

Bibliography

Major publications
Publications of the year
References in notes

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Section: Highlights of the Year

Highlights of the Year

Our new tool, Carnac-LR, dedicated to the clustering of third generation sequencing data, has been published in the high impact journal Nucleic Acid Research (NAR) [16].

Awards

Best Paper Award:

[26]

S. Francois, R. Andonov, D. Lavenier, H. Djidjev.

Global optimization approach for circular and chloroplast genome assembly, in: BICoB 2018 - 10th International Conference on Bioinformatics and Computational Biology, Las Vegas, United States, March 2018, pp. 1-11. [ DOI : 10.1101/231324 ]

https://hal.inria.fr/hal-01666830

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