Section: Research Program
High performance Fast Multipole Method for N-body problems
Participants : Emmanuel Agullo, Olivier Coulaud, Pierre Esterie, Guillaume Sylvand.
In most scientific computing applications considered nowadays as computational challenges (like biological and material systems, astrophysics or electromagnetism), the introduction of hierarchical methods based on an octree structure has dramatically reduced the amount of computation needed to simulate those systems for a given accuracy. For instance, in the N-body problem arising from these application fields, we must compute all pairwise interactions among N objects (particles, lines, ...) at every timestep. Among these methods, the Fast Multipole Method (FMM) developed for gravitational potentials in astrophysics and for electrostatic (coulombic) potentials in molecular simulations solves this N-body problem for any given precision with runtime complexity against for the direct computation.
The potential field is decomposed in a near field part, directly computed, and a far field part approximated thanks to multipole and local expansions. We introduced a matrix formulation of the FMM that exploits the cache hierarchy on a processor through the Basic Linear Algebra Subprograms (BLAS). Moreover, we developed a parallel adaptive version of the FMM algorithm for heterogeneous particle distributions, which is very efficient on parallel clusters of SMP nodes. Finally on such computers, we developed the first hybrid MPI-thread algorithm, which enables to reach better parallel efficiency and better memory scalability. We plan to work on the following points in HiePACS .
Improvement of calculation efficiency
Nowadays, the high performance computing community is examining alternative architectures that address the limitations of modern cache-based designs. GPU (Graphics Processing Units) and the Cell processor have thus already been used in astrophysics and in molecular dynamics. The Fast Mutipole Method has also been implemented on GPU . We intend to examine the potential of using these forthcoming processors as a building block for high-end parallel computing in N-body calculations. More precisely, we want to take advantage of our specific underlying BLAS routines to obtain an efficient and easily portable FMM for these new architectures. Algorithmic issues such as dynamic load balancing among heterogeneous cores will also have to be solved in order to gather all the available computation power. This research action will be conduced on close connection with the activity described in Section 3.2.
Non uniform distributions
In many applications arising from material physics or astrophysics, the distribution of the data is highly non uniform and the data can grow between two time steps. As mentioned previously, we have proposed a hybrid MPI-thread algorithm to exploit the data locality within each node. We plan to further improve the load balancing for highly non uniform particle distributions with small computation grain thanks to dynamic load balancing at the thread level and thanks to a load balancing correction over several simulation time steps at the process level.
Fast multipole method for dislocation operators
The engine that we develop will be extended to new potentials arising from material physics such as those used in dislocation simulations. The interaction between dislocations is long ranged () and anisotropic, leading to severe computational challenges for large-scale simulations. Several approaches based on the FMM or based on spatial decomposition in boxes are proposed to speed-up the computation. In dislocation codes, the calculation of the interaction forces between dislocations is still the most CPU time consuming. This computation has to be improved to obtain faster and more accurate simulations. Moreover, in such simulations, the number of dislocations grows while the phenomenon occurs and these dislocations are not uniformly distributed in the domain. This means that strategies to dynamically balance the computational load are crucial to achieve high performance.
Fast multipole method for boundary element methods
The boundary element method (BEM) is a well known solution of boundary value problems appearing in various fields of physics. With this approach, we only have to solve an integral equation on the boundary. This implies an interaction that decreases in space, but results in the solution of a dense linear system with complexity. The FMM calculation that performs the matrix-vector product enables the use of Krylov subspace methods. Based on the parallel data distribution of the underlying octree implemented to perform the FMM, parallel preconditioners can be designed that exploit the local interaction matrices computed at the finest level of the octree. This research action will be conduced on close connection with the activity described in Section 3.3. Following our earlier experience, we plan to first consider approximate inverse preconditionners that can efficiently exploit these data structures.