Bibliography

Publications of the year

Doctoral Dissertations and Habilitation Theses

1A. Razetti.

Modelling and characterizing axon growth from in vivo data, Université Côte d'Azur, April 2018.

https://tel.archives-ouvertes.fr/tel-01868324

Articles in International Peer-Reviewed Journals

2I. David, P. L. Kohnke, J. Fehrenbach, A. R. Lopes Simoes, E. Debreuve, X. Descombes, F. Plouraboué, P. Degond, X. Druart.

New objective measurements of semen wave motion are associated with fertility in sheep, in: Reproduction, Fertility and Development, 2018, vol. 30, n^o 6, pp. 889-896. [ DOI : 10.1071/RD17472 ]

https://hal.archives-ouvertes.fr/hal-01808988
3K. McDole, L. Guignard, F. Amat, A. Berger, G. Malandain, L. Royer, S. Turaga, K. Branson, P. Keller.

In Toto Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level, in: Cell, October 2018, vol. 175, n^o 3, pp. 859 - 876.e33. [ DOI : 10.1016/j.cell.2018.09.031 ]

https://hal.inria.fr/hal-01900416
4A. Razetti, C. Medioni, G. Malandain, F. Besse, X. Descombes.

A stochastic framework to model axon interactions within growing neuronal populations, in: PLoS Computational Biology, December 2018, vol. 14, n^o 12, e1006627 p.

https://hal.inria.fr/hal-01953244

International Conferences with Proceedings

5A. Bechensteen, L. Blanc-Féraud, G. Aubert.

Single molecule localization by $ℓ_{2} - ℓ_{0}$ constrained optimization, in: iTWIST 2018, Marseille, France, November 2018, https://arxiv.org/abs/1812.05971.

https://hal.inria.fr/hal-01957427
6V. l. Coli, P.-H. Tournier, V. Dolean, I. El Kanfoud, C. Pichot, C. Migliaccio, L. Blanc-Féraud.

Detection of Brain Strokes Using Microwave Tomography, in: International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, Boston, United States, IEEE, July 2018.

https://hal.archives-ouvertes.fr/hal-01824526
7A.-I. Grapa, R. Meunier, L. Blanc-Féraud, G. Efthymiou, S. Schaub, A. Radwanska, E. Van Obberghen-Schilling, X. Descombes.

Classification of the fibronectin variants with curvelets, in: ISBI 2018 - IEEE 15th International Symposium on Biomedical Imaging, Washington, DC, United States, April 2018, pp. 930-933. [ DOI : 10.1109/ISBI.2018.8363723 ]

https://hal.archives-ouvertes.fr/hal-01868726
8B. M. Toledo Acosta, X. Heiligenstein, G. Malandain, P. Bouthemy.

Intensity-based matching and registration for 3D correlative microscopy with large discrepancies, in: ISBI 2018 - IEEE 15th International Symposium on Biomedical Imaging, Washington, United States, IEEE, April 2018, pp. 493-496. [ DOI : 10.1109/ISBI.2018.8363623 ]

https://hal.inria.fr/hal-01930740

Conferences without Proceedings

9N. Cedilnik, E. Debreuve, F. De Graeve, F. Besse, X. Descombes.

SPADE: A Small Particle Detection Method Using A Dictionary Of Shapes Within The Marked Point Process Framework, in: IEEE International Symposium on Biomedical Imaging (ISBI) 2018, Washington, DC, United States, April 2018.

https://hal.inria.fr/hal-01867805

Other Publications

10N. Cedilnik, E. Debreuve, F. De Graeve, F. Besse, X. Descombes.

SPADE: A Small Particle Detection Method Using A Dictionary Of Shapes Within The Marked Point Process Framework, April 2018, IEEE International Symposium on Biomedical Imaging (ISBI) 2018, Poster.

https://hal.inria.fr/hal-01867816
11F. De Graeve, S. Rahmoun, D. Kozlowski, N. Cedilnik, E. Debreuve, X. Descombes, F. Besse.

An image based high throughput screen to identify regulators of Imp containing RNP granules, October 2018, 32nd French Drosophila Meeting, Poster.

https://hal.archives-ouvertes.fr/hal-01900773
12L. Guignard, U.-M. Fiuza, B. Leggio, E. Faure, J. Laussu, L. Hufnagel, G. Malandain, C. Godin, P. Lemaire.

Contact-dependent cell-cell communications drive morphological invariance during ascidian embryogenesis, November 2018, working paper or preprint. [ DOI : 10.1101/238741 ]

https://hal.archives-ouvertes.fr/hal-01938126

References in notes

13A. Beck, Y. C. Eldar.

Sparsity constrained nonlinear optimization: Optimality conditions and algorithms, in: SIAM Journal on Optimization, 2013, vol. 23, n^o 3, pp. 1480–1509.
14S. Gazagnes, E. Soubies, L. Blanc-Féraud.

High density molecule localization for super-resolution microscopy using CEL0 based sparse approximation, in: ISBI 2017 - IEEE International Symposium on Biomedical Imaging, Melbourne, Australia, Proceedings of ISBI 2017, April 2017, 4 p.

https://hal.inria.fr/hal-01443565
15E. Nehme, L. E. Weiss, T. Michaeli, Y. Shechtman.

Deep-STORM: super-resolution single-molecule microscopy by deep learning, in: Optica, 2018, vol. 5, n^o 4, pp. 458–464.
16G. Peyré, M. Cuturi, J. Solomon.

Gromov-Wasserstein Averaging of Kernel and Distance Matrices, in: Proc. 33rd International Conference on Machine Learning (ICML), New-York, United States, June 2016.

https://hal.archives-ouvertes.fr/hal-01322992
17E. Poulain, G. Malandain, R. Vaillant.

3D Coronary vessel tracking in x-ray projections, in: International Conference on Functional Imaging and Modeling of the Heart (FIMH), Toronto, Canada, LNCS, June 2017, vol. 10263, pp. 204-215. [ DOI : 10.1007/978-3-319-59448-4_20 ]

https://hal.inria.fr/hal-01502128
18D. Sage, H. Kirshner, T. Pengo, N. Stuurman, J. Min, S. Manley, M. Unser.

Quantitative evaluation of software packages for single-molecule localization microscopy, in: Nature methods, 2015, vol. 12, n^o 8, 717 p.
19E. Soubies, L. Blanc-Féraud, G. Aubert.

A Unified View of Exact Continuous Penalties for l2-l0 Minimization, in: SIAM Journal on Optimization, 2017, vol. 27, n^o 3. [ DOI : 10.1137/16M1059333 ]

https://hal.inria.fr/hal-01267701
20G. Yuan, B. Ghanem.

Sparsity Constrained Minimization via Mathematical Programming with Equilibrium Constraints, August 2016, arXiv:1608.04430.
21M. Zaslavskiy, F. Bach, J.-P. Vert.

Many-to-Many Graph Matching: A Continuous Relaxation Approach, in: Machine Learning and Knowledge Discovery in Databases, Berlin, Heidelberg, J. L. Balcázar, F. Bonchi, A. Gionis, M. Sebag (editors), Springer Berlin Heidelberg, 2010, pp. 515–530.

Previous |

Home