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Bibliography

Major publications by the team in recent years
  • 1J. Albella Martínez, S. Imperiale, P. Joly, J. Rodríguez.

    Solving 2D linear isotropic elastodynamics by means of scalar potentials: a new challenge for finite elements, in: Journal of Scientific Computing, 2018. [ DOI : 10.1007/s10915-018-0768-9 ]

    https://hal.inria.fr/hal-01803536
  • 2M. Caruel, P. Moireau, D. Chapelle.

    Stochastic modeling of chemical-mechanical coupling in striated muscles, in: Biomechanics and Modeling in Mechanobiology, 2018, forthcoming. [ DOI : 10.1007/s10237-018-1102-z ]

    https://hal.inria.fr/hal-01928279
  • 3R. Chabiniok, P. Moireau, P.-F. Lesault, A. Rahmouni, J.-F. Deux, D. Chapelle.

    Estimation of tissue contractility from cardiac cine-MRI using a biomechanical heart model, in: Biomechanics and Modeling in Mechanobiology, 2012, vol. 11, no 5, pp. 609-630. [ DOI : 10.1007/s10237-011-0337-8 ]

    http://hal.inria.fr/hal-00654541
  • 4D. Chapelle, K. Bathe.

    The Finite Element Analysis of Shells - Fundamentals - Second Edition, Computational Fluid and Solid Mechanics, Springer, 2011, 410 p. [ DOI : 10.1007/978-3-642-16408-8 ]

    http://hal.inria.fr/hal-00654533
  • 5D. Chapelle, N. Cîndea, P. Moireau.

    Improving convergence in numerical analysis using observers - The wave-like equation case, in: Mathematical Models and Methods in Applied Sciences, 2012, vol. 22, no 12. [ DOI : 10.1142/S0218202512500406 ]

    http://hal.inria.fr/inria-00621052
  • 6D. Chapelle, P. Le Tallec, P. Moireau, M. Sorine.

    An energy-preserving muscle tissue model: formulation and compatible discretizations, in: International Journal for Multiscale Computational Engineering, 2012, vol. 10, no 2, pp. 189-211. [ DOI : 10.1615/IntJMultCompEng.2011002360 ]

    http://hal.inria.fr/hal-00678772
  • 7D. Chapelle, P. Moireau.

    General coupling of porous flows and hyperelastic formulations – From thermodynamics principles to energy balance and compatible time schemes, in: European Journal of Mechanics - B/Fluids, 2014, vol. 46, pp. 82-96, Updated version of previously published research report. [ DOI : 10.1016/j.euromechflu.2014.02.009 ]

    https://hal.inria.fr/inria-00520612
  • 8A. Collin, S. Imperiale.

    Mathematical analysis and 2-scale convergence of a heterogeneous microscopic bidomain model, in: Mathematical Models and Methods in Applied Sciences, 2018, forthcoming.

    https://hal.inria.fr/hal-01759914
  • 9B. Lynch, S. Bancelin, C. Bonod-Bidaud, J.-B. Gueusquin, F. Ruggiero, M.-C. Schanne-Klein, J.-M. Allain.

    A novel microstructural interpretation for the biomechanics of mouse skin derived from multiscale characterization, in: Acta Biomaterialia, 2017, vol. 50, pp. 302-311. [ DOI : 10.1016/j.actbio.2016.12.051 ]

    https://hal.archives-ouvertes.fr/hal-01531321
  • 10P. Moireau.

    A Discrete-time Optimal Filtering Approach for Non-linear Systems as a Stable Discretization of the Mortensen Observer, in: ESAIM: Control, Optimisation and Calculus of Variations, 2017, forthcoming.

    https://hal.inria.fr/hal-01671271
  • 11M. Sermesant, R. Chabiniok, P. Chinchapatnam, T. Mansi, F. Billet, P. Moireau, J.-M. Peyrat, K. C. Wong, J. Relan, K. S. Rhode, M. Ginks, P. Lambiase, H. Delingette, M. Sorine, C. A. Rinaldi, D. Chapelle, R. Razavi, N. Ayache.

    Patient-Specific Electromechanical Models of the Heart for Prediction of the Acute Effects of Pacing in CRT: a First Validation, in: Medical Image Analysis, 2012, vol. 16, no 1, pp. 201-215. [ DOI : 10.1016/j.media.2011.07.003 ]

    http://hal.inria.fr/inria-00616191
Publications of the year

Doctoral Dissertations and Habilitation Theses

  • 12F. Caforio.

    Mathematical modelling and numerical simulation of elastic wave propagation in soft tissues with application to cardiac elastography, Université Paris-Saclay, January 2019.

    https://pastel.archives-ouvertes.fr/tel-02262282
  • 13F. Kimmig.

    Modélisation multi-échelles de la contraction musculaire : De la dynamique stochastique des moteurs moléculaires à la mécanique des milieux continus, Université Paris-Saclay, December 2019.

    https://tel.archives-ouvertes.fr/tel-02439432

Articles in International Peer-Reviewed Journals

  • 14J. Albella Martínez, H. Ben Dhia, S. Imperiale, J. Rodríguez.

    Mathematical and numerical study of transient wave scattering by obstacles with the Arlequin Method, in: SIAM Journal on Numerical Analysis, 2019, forthcoming. [ DOI : 10.1137/19M1263959 ]

    https://hal.inria.fr/hal-01898420
  • 15D. H. Baffet, M. J. Grote, S. Imperiale, M. Kachanovska.

    Energy Decay and Stability of a Perfectly Matched Layer For the Wave Equation, in: Journal of Scientific Computing, November 2019. [ DOI : 10.1007/s10915-019-01089-9 ]

    https://hal.archives-ouvertes.fr/hal-01865484
  • 16B. Burtschell, P. Moireau, D. Chapelle.

    Numerical analysis for an energy-stable total discretization of a poromechanics model with inf-sup stability, in: Acta Mathematicae Applicatae Sinica, 2019, vol. 35, no 1, pp. 28-53. [ DOI : 10.1007/s10255-019-0799-5 ]

    https://hal.inria.fr/hal-01928312
  • 17F. Caforio, S. Imperiale.

    High-order discrete fourier transform for the solution of the Poisson equation, in: SIAM Journal on Scientific Computing, June 2019, vol. 41, no 5, pp. A2747-A2771. [ DOI : 10.1137/18M1225410 ]

    https://hal.inria.fr/hal-01914257
  • 18M. Caruel, P. Moireau, D. Chapelle.

    Stochastic modeling of chemical-mechanical coupling in striated muscles, in: Biomechanics and Modeling in Mechanobiology, 2019. [ DOI : 10.1007/s10237-018-1102-z ]

    https://hal.inria.fr/hal-01928279
  • 19J. Chabassier, J. Diaz, S. Imperiale.

    Construction and analysis of fourth order, energy consistent, family of explicit time discretizations for dissipative linear wave equations, in: ESAIM: Mathematical Modelling and Numerical Analysis, 2019, forthcoming.

    https://hal.inria.fr/hal-01894238
  • 20F. Clément, B. Laroche, F. Robin.

    Analysis and numerical simulation of an inverse problem for a structured cell population dynamics model, in: Mathematical Biosciences & Engineering, 2019, vol. 16, no 4, pp. 3018-3046. [ DOI : 10.3934/mbe.2019150 ]

    https://hal.archives-ouvertes.fr/hal-02154588
  • 21F. Clément, F. Robin, R. Yvinec.

    Analysis and calibration of a linear model for structured cell populations with unidirectional motion : Application to the morphogenesis of ovarian follicles, in: SIAM Journal on Applied Mathematics, February 2019, vol. 79, no 1, pp. 207-229, https://arxiv.org/abs/1712.05372. [ DOI : 10.1137/17M1161336 ]

    https://hal.archives-ouvertes.fr/hal-01852560
  • 22A. Collin, S. Imperiale, P. Moireau, J.-F. Gerbeau, D. Chapelle.

    Apprehending the effects of mechanical deformations in cardiac electrophysiology - An homogenization approach, in: Mathematical Models and Methods in Applied Sciences, December 2019, vol. 29, no 13, pp. 2377-2417. [ DOI : 10.1142/S0218202519500490 ]

    https://hal.inria.fr/hal-02267941
  • 23J. Diani, P. Le Tallec.

    A fully equilibrated microsphere model with damage for rubberlike materials, in: Journal of the Mechanics and Physics of Solids, March 2019, vol. 124, pp. 702-713. [ DOI : 10.1016/j.jmps.2018.11.021 ]

    https://hal.archives-ouvertes.fr/hal-01986861
  • 24G. Ducourthial, J. Affagard, M. Schmeltz, X. Solinas, M. Lopez‐Poncelas, C. Bonod-Bidaud, R. Rubio‐Amador, F. Ruggiero, J.-M. Allain, E. Beaurepaire, M.-C. Schanne-Klein.

    Monitoring dynamic collagen reorganization during skin stretching with fast polarization‐resolved second harmonic generation imaging, in: Journal of Biophotonics, January 2019, vol. 12, no 5, e201800336 p, https://arxiv.org/abs/1904.09177. [ DOI : 10.1002/jbio.201800336 ]

    https://hal.archives-ouvertes.fr/hal-02103594
  • 25H. N. T. Finsberg, J. Sundnes, C. Xi, L. C. Lee, X. Zhao, J. L. Tan, M. Genet, L. Zhong, S. T. Wall.

    Computational quantification of patient specific changes in ventricular dynamics associated with pulmonary hypertension, in: AJP - Heart and Circulatory Physiology, 2019. [ DOI : 10.1152/ajpheart.00094.2019 ]

    https://hal.archives-ouvertes.fr/hal-02375749
  • 26J.-M. Frachisse, S. Thomine, J.-M. Allain.

    Calcium and plasma membrane force-gated ion channels behind development, in: Current Opinion in Plant Biology, 2019, vol. 53, pp. 57–64. [ DOI : 10.1016/j.pbi.2019.10.006 ]

    https://hal.archives-ouvertes.fr/hal-02389243
  • 27M. Genet.

    A relaxed growth modeling framework for controlling growth-induced residual stresses, in: Clinical Biomechanics, 2019. [ DOI : 10.1016/j.clinbiomech.2019.08.015 ]

    https://hal.archives-ouvertes.fr/hal-02069113
  • 28M. Guichard, J.-M. Allain, M. W. Bianchi, J.-M. Frachisse.

    Root Hair Sizer: an algorithm for high throughput recovery of different root hair and root developmental parameters, in: Plant Methods, December 2019, vol. 15, no 1. [ DOI : 10.1186/s13007-019-0483-z ]

    https://hal.archives-ouvertes.fr/hal-02293640
  • 29S. Imperiale, P. Moireau, A. Tonnoir.

    Analysis of an observer strategy for initial state reconstruction of wave-like systems in unbounded domains, in: ESAIM: Control, Optimisation and Calculus of Variations, April 2019. [ DOI : 10.1051/cocv/2019026 ]

    https://hal.inria.fr/hal-01898440
  • 30F. Kimmig, D. Chapelle, P. Moireau.

    Thermodynamic properties of muscle contraction models and associated discrete-time principles, in: Advanced Modeling and Simulation in Engineering Sciences, 2019, forthcoming. [ DOI : 10.1186/s40323-019-0128-9 ]

    https://hal.inria.fr/hal-02065957
  • 31Z. Ma, H. Maitournam, P. Le Tallec.

    An energy-based strategy for fatigue analysis in presence of general multi-axial time varying loadings, in: International Journal of Fatigue, March 2020, vol. 132, 105367 p. [ DOI : 10.1016/j.ijfatigue.2019.105367 ]

    https://hal.archives-ouvertes.fr/hal-02421856
  • 32A. Marboeuf, A. Claisse, P. Le Tallec.

    Conservative and entropy controlled remap for multi-material ALE simulations with space-staggered schemes, in: Journal of Computational Physics, August 2019, vol. 390, pp. 66-92. [ DOI : 10.1016/j.jcp.2019.04.017 ]

    https://hal.archives-ouvertes.fr/hal-02421917
  • 33M. Postel, A. Karam, G. Pézeron, S. Schneider-Maunoury, F. Clément.

    A multiscale mathematical model of cell dynamics during neurogenesis in the mouse cerebral cortex, in: BMC Bioinformatics, December 2019, vol. 20, no 1. [ DOI : 10.1186/s12859-019-3018-8 ]

    https://hal.inria.fr/hal-01783141
  • 34C. Zhang, A. Collin, P. Moireau, A. Trouvé, M. Rochoux.

    Front shape similarity measure for data-driven simulations of wildland fire spread based on state estimation: Application to the RxCADRE field-scale experiment, in: Proceedings of the Combustion Institute, 2019, vol. 37, no 3, pp. 4201-4209. [ DOI : 10.1016/j.proci.2018.07.112 ]

    https://hal.inria.fr/hal-01969130

International Conferences with Proceedings

  • 35E. Berberoglu, C. T. Stoeck, P. Moireau, S. Kozerke, M. Genet.

    Validation of Finite Element Image Registration-based Cardiac Strain Estimation from Magnetic Resonance Images, in: GAMM 2019 - 90th Annual Meeting of the International Association of Applied Mathematics and Mechanics, Vienna, Austria, PAMM proceedings in applied mathematics and mechanics, February 2019. [ DOI : 10.1002/pamm.201900418 ]

    https://hal.archives-ouvertes.fr/hal-02375735
  • 36R. Chabiniok, G. Bureau, A. Groth, J. Tintera, J. Weese, D. Chapelle, P. Moireau.

    Cardiac displacement tracking with data assimilation combining a biomechanical model and an automatic contour detection, in: FIMH 2019 - Proceedings of Functional Imaging and Modeling of Heart, Bordeaux, France, Lecture Notes in Computer Science (LNCS), June 2019, vol. 11504, pp. 405-414.

    https://hal.archives-ouvertes.fr/hal-02186804
  • 37A. Gérard, A. Collin, G. Bureau, P. Moireau, Y. Coudière.

    Model assessment through data assimilation of realistic data in cardiac electrophysiology, in: FIMH 2019 - 10th Functional Imaging and Modeling of the Heart, Bordeaux, France, June 2019.

    https://hal.inria.fr/hal-02172102
  • 38A. Le Gall, F. Vallée, D. Chapelle, R. Chabiniok.

    Minimally-invasive estimation of patient-specific end-systolic elastance using a biomechanical heart model, in: FIMH 2019 - 10th Functional Imaging and Modelling of the Heart, Bordeaux, France, June 2019.

    https://hal.archives-ouvertes.fr/hal-02153611
  • 39L. C. Lee, M. Genet.

    Validation of Equilibrated Warping-image registration with mechanical regularization-on 3D ultrasound images, in: FIMH 2019 - International Conference on Functional Imaging and Modeling of the Heart, Bordeaux, France, Lecture notes in computer science, Springer, May 2019, vol. 11504, pp. 334-341. [ DOI : 10.1007/978-3-030-21949-9_36 ]

    https://hal.archives-ouvertes.fr/hal-02146580
  • 40B. Ruijsink, K. Zugaj, K. Pushparajah, R. Chabiniok.

    Model-based indices of early-stage cardiovascular failure and its therapeutic management in Fontan patients, in: FIMH 2019 - 10th Functional Imaging and Modeling of Heart, Bordeaux, France, Lecture Notes in Computer Science (LNCS), June 2019, vol. 11504, pp. 379-387.

    https://hal.archives-ouvertes.fr/hal-02186819

Conferences without Proceedings

  • 41G. Beck, S. Imperiale, P. Joly.

    Effective models for non-perfectly conducting thin coaxial cables, in: Waves 2019 - 14th International Conference on Mathematical and Numerical Aspects of Wave Propagation, Vienna, Austria, 2019.

    https://hal.archives-ouvertes.fr/hal-02414849
  • 42M. Genet.

    Medical images registration with finite elements and mechanical regularization, in: GAMM 2019 - 90th Annual Meeting of the International Association of Applied Mathematics and Mechanics, Vienna, Austria, February 2019.

    https://hal.archives-ouvertes.fr/hal-02069100
  • 43C. Patte, M. Genet, C. Fetita, P.-Y. Brillet, D. Chapelle.

    Mécanique pulmonaire personnalisée : modélisation et estimation - Application à la fibrose pulmonaire, in: CSMA 2019 - 14ème Colloque National en Calcul des Structures, Giens, France, May 2019.

    https://hal.archives-ouvertes.fr/hal-02068920
  • 44K. Škardová, M. Rambausek, R. Chabiniok, M. Genet.

    Mechanical and Imaging Models-based Image Registration, in: VipIMAGE 2019 - VII ECCOMAS Thematic Conference on Computational Vision and Medical Image Processing, Porto, Portugal, 2019. [ DOI : 10.1007/978-3-030-32040-9_9 ]

    https://hal.archives-ouvertes.fr/hal-02186828

Scientific Books (or Scientific Book chapters)

  • 45J.-M. Allain, B. Lynch, M.-C. Schanne-Klein.

    Multiscale characterization of skin mechanics through in situ imaging, in: Skin Biophysics : From Experimental Characterisation to Advanced Modelling, G. Limbert (editor), Studies in Mechanobiology, Tissue Engineering and Biomaterials, Springer International Publishing, 2019, vol. 22, pp. 265-280. [ DOI : 10.1007/978-3-030-13279-8_8 ]

    https://hal-polytechnique.archives-ouvertes.fr/hal-02114148
  • 46S. Bancelin, B. Lynch, C. Bonod-Bidaud, P. Dokládal, F. Ruggiero, J.-M. Allain, M.-C. Schanne-Klein.

    Combination of Traction Assays and Multiphoton Imaging to Quantify Skin Biomechanics, in: Collagen : Methods and Protocols, I. Sagi, N. A. Afratis (editors), Methods in Molecular Biology, Humana Press, March 2019, vol. 1944, pp. 145-155. [ DOI : 10.1007/978-1-4939-9095-5_11 ]

    https://hal-polytechnique.archives-ouvertes.fr/hal-02115604

Internal Reports

Patents

Other Publications

  • 49J. Albella Martínez, S. Imperiale, P. Joly, J. Rodríguez.

    Numerical Analysis of a Method for Solving 2D Linear Isotropic Elastodynamics with Free Boundary Condition using Potentials and Finite Elements, November 2019, working paper or preprint. [ DOI : 10.1007/s10915-018-0768-9 ]

    https://hal.inria.fr/hal-02345808
  • 50C. Bonnet, K. Chahour, F. Clément, M. Postel, R. Yvinec.

    Multiscale population dynamics in reproductive biology: singular perturbation reduction in deterministic and stochastic models, March 2019, https://arxiv.org/abs/1903.08555 - working paper or preprint.

    https://hal.inria.fr/hal-02075253
  • 51F. Caforio, S. Imperiale.

    Mathematical analysis of a penalization strategy for incompressible elastodynamics, December 2019, working paper or preprint.

    https://hal.inria.fr/hal-02389286
  • 52F. Caforio, S. Imperiale.

    Mathematical modelling of transient shear wave elastography in the heart, March 2019, working paper or preprint.

    https://hal.inria.fr/hal-01992069
  • 53J. Chabassier, S. Imperiale.

    Construction and convergence analysis of conservative second order local time discretisation for wave equations based on domain decomposition, August 2019, working paper or preprint.

    https://hal.inria.fr/hal-01894357
  • 54F. Clément, F. Robin, R. Yvinec.

    Stochastic nonlinear model for somatic cell population dynamics during ovarian follicle activation, March 2019, https://arxiv.org/abs/1903.01316 - working paper or preprint.

    https://hal.inria.fr/hal-02057983