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Section: New Results
Genomic rearrangements
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Within a collaboration with LIAFA (CNRS UMR 7089, and University Paris 7) we published a method for the assembling of ancestral gene orders from contiguous ancestral fragments [4] .
Overall Objectives
Application Domains
Software and Platforms
- YASS – Local homology search
- RNA tools – RNA structure prediction and comparison
- TFM-Explorer – Identification and analysis of transcription factor binding sites
- RNAspace – A platform for noncoding RNA annotation
- CGseq – A toolbox for comparative analysis
- SortMeRNA – Metatranscriptome classification
- Vidjil – Quantifying lymphocytes rearrangements in high-throughput sequencing data
- Biomanycores.org – A community for bioinformatics on manycore processors
- Norine – A resource for nonribosomal peptides
- Crac – RNA-seq read analysis
- GkArrays – Indexing high throughput sequencer reads
New Results
Partnerships and Cooperations
Dissemination
Bibliography
Overall Objectives
Application Domains
Software and Platforms
- YASS – Local homology search
- RNA tools – RNA structure prediction and comparison
- TFM-Explorer – Identification and analysis of transcription factor binding sites
- RNAspace – A platform for noncoding RNA annotation
- CGseq – A toolbox for comparative analysis
- SortMeRNA – Metatranscriptome classification
- Vidjil – Quantifying lymphocytes rearrangements in high-throughput sequencing data
- Biomanycores.org – A community for bioinformatics on manycore processors
- Norine – A resource for nonribosomal peptides
- Crac – RNA-seq read analysis
- GkArrays – Indexing high throughput sequencer reads
New Results
Partnerships and Cooperations
Dissemination
Bibliography