## Section: Research Program

### Cancer modeling

Participants : Sebastien Benzekry, Thierry Colin, Angelo Iollo, Clair Poignard, Olivier Saut, Lisl Weynans.

Tumor growth, cancer, metastasis

As in microfluidics, the growth of a tumor is a low Reynolds number flow. Several kinds of interfaces are present (membranes, several populations of cells,...) The biological nature of the tissues impose the use of different models in order to describe the evolution of tumor growth. The complexity of the geometry, of the rheological properties and the coupling with multi-scale phenomena is high but not far away from those encountered in microfluidics and the models and methods are close.

The challenge is twofold. On one hand, we wish to understand the complexity of the coupling effects between the different levels
(cellular, genetic, organs, membranes, molecular). Trying to be exhaustive is of course hopeless, however it is possible numerically to isolate
some parts of the evolution in order to better understand the interactions. Another strategy is to test *in silico* some therapeutic
innovations. An example of such a test is given in [76]
where the efficacy of radiotherapy is studied and in
[77]
where the effects of
anti-invasive agents is investigated. It is therefore useful to model a tumor growth at several stage of evolution.
The macroscopic continuous model is based on Darcy's law
which seems to be a good approximation to describe the flow of the
tumor cells in the extra-cellular
matrix [45] , [67] , [68] .
It is therefore possible to develop a two-dimensional
model for the evolution of the cell densities. We formulate
mathematically the evolution of the cell densities in the tissue as advection
equations for a set of unknowns representing the density of cells
with position $(x,y)$ at time $t$ in a given cycle phase.
Assuming that all cells move with the same velocity given by
Darcy's law and applying the principle of mass balance,
one obtains the advection equations with a source term given by a cellular automaton.
We assume diffusion for the oxygen and the diffusion constant
depends on the density of the cells.
The source of oxygen corresponds to the spatial
location of blood vessels. The available quantities of oxygen interact with
the proliferation rate given by the cellular automaton [76] .

Another axis of our investigations in mathematical modeling-assisted theoretical biology is the biology and systemic dynamics of the metastatic process. This axis regroups several projects for which our approach can be decomposed into three steps. First, we base ourselves on a detailed study of the particular biological process, in close collaboration with biologists and the data they dispose. In a second step, we reduce the biological dynamics to its more essential components and build mathematical models able to simulate the process, to address the particular biological question under investigation and to give nontrivial insights on the overall complex combination of these dynamics. Eventually, the last step consists in confronting the models to the data, using statistical parameter estimation methods, in order to identify theories or hypothesis that could or could not have generated the data and thus improve the biological understanding.

A forthcoming investigation in cancer treatment simulation is the influence of the electrochemotherapy [71] on the tumor growth. Electrochemotherapy consists in imposing to the malignant tumor high voltage electric pulses so that the plasma membrane of carcinoma cells is permeabilized. Biologically active molecules such as bleomycin, which usually cannot diffuse through the membrane, may then be internalized. A work in progress (C.Poignard [75] in collaboration with the CNRS lab of physical vectorology at the Institut Gustave Roussy) consists in modelling electromagnetic phenomena at the cell scale. A coupling between the microscopic description of the electroporation of cells and its influence on the global tumor growth at the macroscopic scale is expected. Another key point is the parametrization of the models in order to produce image-based simulations.

The second challenge is more ambitious. Mathematical models of cancer have been extensively developed with the aim of understanding and predicting tumor growth and the effects of treatments. In vivo modeling of tumors is limited by the amount of information available. However, in the last few years there have been dramatic increases in the range and quality of information available from non-invasive imaging methods, so that several potentially valuable imaging measurements are now available to quantitatively measure tumor growth, assess tumor status as well as anatomical or functional details. Using different methods such as the CT scan, magnetic resonance imaging (MRI), or positron emission tomography (PET), it is now possible to evaluate and define tumor status at different levels: physiological, molecular and cellular.

In this context, the present project aims at supporting the decision process of oncologists in the definition of therapeutic protocols via quantitative methods. The idea is to build mathematically and physically sound phenomenological models that can lead to patient-specific full-scale simulations, starting from data collected typically through medical imagery like CT scans, MRIs and PET scans or by quantitative molecular biology for leukemia. Our ambition is to provide medical doctors with patient-specific tumor growth models able to estimate, on the basis of previously collected data and within the limits of phenomenological models, the evolution at subsequent times of the pathology and possibly the response to the therapies.

The final goal is to provide numerical tools in order to help to answer to the crucial questions for a clinician:

When to start a treatment?

When to change a treatment?

When to stop a treatment?

Also we intend to incorporate real-time model information for improving the precision and effectiveness of non-invasive or micro-invasive tumor ablation techniques like acoustic hyperthermia, electroporation, radiofrequency or cryo-ablation.

We will specifically focus on the following pathologies: Lung and liver metastasis of a distant tumor

Low grade and high grade gliomas, meningiomas

Chronic myelogenous leukemia

These pathologies have been chosen because of the existing collaborations between the applied mathematics department of University of Bordeaux and the Institut Bergonié.

Our approach. Our approach is deterministic and spatial: it is based on solving an inverse problem based on imaging data. Models are of partial differential equation (PDE) type. They are coupled with a process of data assimilation based on imaging. We already have undertaken test cases on patients that are followed at Bergonié for lung metastases of thyroid tumors. These patients have a slowly evolving, asymptomatic metastatic disease, monitored by CT scans. On two thoracic images relative to successive times, the volume of the tumor under investigation is extracted by segmentation. To test our method, we chose patients without treatment and for whom we had at least three successive.