Bibliography

Publications of the year

Articles in International Peer-Reviewed Journals

• 1A. Abdo, V. Leclère, P. Jacques, N. Salim, M. Pupin.
  
  Prediction of New Bioactive Molecules using a Bayesian Belief Network, in: Journal of Chemical Information and Modeling, January 2014, vol. 54, n^o 1, pp. 30-36. [ DOI : 10.1021/ci4004909 ]
  
  https://hal.archives-ouvertes.fr/hal-01090611
• 2T. Caradec, M. Pupin, A. Vanvlassenbroeck, M.-D. Devignes, M. Smaïl-Tabbone, P. Jacques, V. Leclère.
  
  Prediction of Monomer Isomery in Florine: A Workflow Dedicated to Nonribosomal Peptide Discovery, in: PLoS ONE, January 2014, vol. 9, n^o 1, e85667. [ DOI : 10.1371/journal.pone.0085667 ]
  
  https://hal.archives-ouvertes.fr/hal-01090619
• 3M. Frith, L. Noé.
  
  Improved search heuristics find 20 000 new alignments between human and mouse genomes, in: Nucleic Acids Research, February 2014, vol. 42, n^o 7, e59. [ DOI : 10.1093/nar/gku104 ]
  
  https://hal.inria.fr/hal-00958207
• 4R. Giegerich, H. Touzet.
  
  Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems, in: Algorithms, 2014, vol. 7, pp. 62 - 144. [ DOI : 10.3390/a7010062 ]
  
  https://hal.archives-ouvertes.fr/hal-01084318
• 5M. Giraud, M. Salson, M. Duez, C. Villenet, S. Quief, A. Caillault, N. Grardel, C. Roumier, C. Preudhomme, M. Figeac.
  
  Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing, in: BMC Genomics, 2014, vol. 15, n^o 1, 409 p. [ DOI : 10.1186/1471-2164-15-409 ]
  
  https://hal.archives-ouvertes.fr/hal-01009173
• 6L. Noé, D. E. K. Martin.
  
  A Coverage Criterion for Spaced Seeds and Its Applications to Support Vector Machine String Kernels and k-Mer Distances, in: Journal of Computational Biology, December 2014, vol. 21, n^o 12, 28 p. [ DOI : 10.1089/cmb.2014.0173 ]
  
  https://hal.inria.fr/hal-01083204

International Conferences with Proceedings

• 8A. Saffarian, M. Giraud, H. Touzet.
  
  Searching for alternate RNA structures in genomic sequences, in: CMSR - Computational Methods for Structural RNAs, Strasbourg, France, 1st workshop on Computational Methods for Structural RNAs, September 2014, vol. 1, pp. 13-24. [ DOI : 10.15455/CMSR.2014.0002 ]
  
  https://hal.archives-ouvertes.fr/hal-01084319
• 9C. Vroland, M. Salson, H. Touzet.
  
  Lossless seeds for searching short patterns with high error rates, in: International Workshop On Combinatorial Algorithms, Duluth, United States, October 2014.
  
  https://hal.archives-ouvertes.fr/hal-01079840

National Conferences with Proceedings

• 10N. Grardel, M. Salson, A. Caillault, M. Duez, C. Villenet, S. Quief, S. Sebda, C. Roumier, M. Figeac, C. Preudhomme, M. Giraud.
  
  Diagnostic et suivi des leucémies aiguës lymphoblastiques (LAL) par séquençage haut-débit (HTS), in: Congrès de la Société Française d'Hématologie (SFH), Paris, France, 2014.
  
  https://hal.archives-ouvertes.fr/hal-01100152

Conferences without Proceedings

• 11E. Kopylova, L. Noé, P. Pericard, M. Salson, H. Touzet.
  
  SortMeRNA 2: ribosomal RNA classification for taxonomic assignation, in: ECCB - Workshop on Recent Computational Advances in Metagenomics, Strasbourg, France, September 2014.
  
  https://hal.archives-ouvertes.fr/hal-01094011
• 12E. Kopylova, L. Noé, P. Pericard, H. Touzet.
  
  SortMeRNA 2: ribosomal RNA classification for taxonomic assignation , in: Bioinformatics for Environmental Genomics, Lyon, France, May 2014.
  
  https://hal.archives-ouvertes.fr/hal-01094029

Other Publications

• 13N. Grardel, M. Giraud, M. Salson, M. Duez.
  
  Multiclonal Diagnosis and MRD Follow-up in ALL with HTS Coupled with a Bioinformatic Analysis, 2014, American Society of Hematology Annual Meeting.
  
  https://hal.archives-ouvertes.fr/hal-01100290

References in notes

• 14F. Lipmann, W. Gevers, H. Kleinkauf, R. J. Roskoski.
  
  Polypeptide synthesis on protein templates: the enzymatic synthesis of gramicidin S and tyrocidine, in: Adv Enzymol Relat Areas Mol Biol, 1971, vol. 35, pp. 1–34.