Section: Partnerships and Cooperations
Inria Associate Teams
The title of the project is “Comparative Genomics for the analysis of gene structure evolution: ALternative CODing in Eukaryote genes through alternative splicing, transcription, and translation.”. The project involves partners from EPI Bonsai and from the Université du Québec À Montréal (UQÀM, Canada), from year 2014 to year 2017 (see also: http://thales.math.uqam.ca/~cgalcode/ ).
The aim of this Associated Team is the development of comparative genomics models and methods for the analysis of eukaryotes gene structure evolution. The goal is to answer very important questions arising from recent discoveries on the major role played by alternative transcription, splicing, and translation, in the functional diversification of eukaryote genes.
Inria International Partners
Informal International Partners
Computational Biology Research Center, Tokyo: Collaboration with Martin C. Frith on transition spaced seeds  .
Department of Statistics of the North Carolina State University (Raleigh): Collaboration with Donald E.K. Martin one spaced seeds coverage  .
University of Bielefeld: Collaboration with Robert Giegerich on RNA bioinformatics  .